data_2PCN # _entry.id 2PCN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PCN pdb_00002pcn 10.2210/pdb2pcn/pdb RCSB RCSB042229 ? ? WWPDB D_1000042229 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id gka001001813.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PCN _pdbx_database_status.recvd_initial_deposition_date 2007-03-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jeyakanthan, J.' 1 'Kanaujia, S.P.' 2 'Rafi, Z.A.' 3 'Sekar, K.' 4 'Agari, Y.' 5 'Ebihara, A.' 6 'Kuramitsu, S.' 7 'Shinkai, A.' 8 'Shiro, Y.' 9 'Yokoyama, S.' 10 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 11 # _citation.id primary _citation.title 'Crystal structure of S-adenosylmethionine:2-dimethylmenaquinone methyltransferase (gk_1813) from geobacillus kaustophilus HTA426' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jeyakanthan, J.' 1 ? primary 'Kanaujia, S.P.' 2 ? primary 'Rafi, Z.A.' 3 ? primary 'Sekar, K.' 4 ? primary 'Agari, Y.' 5 ? primary 'Ebihara, A.' 6 ? primary 'Kuramitsu, S.' 7 ? primary 'Shinkai, A.' 8 ? primary 'Shiro, Y.' 9 ? primary 'Yokoyama, S.' 10 ? # _cell.entry_id 2PCN _cell.length_a 84.573 _cell.length_b 84.573 _cell.length_c 83.338 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PCN _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'S-adenosylmethionine:2-demethylmenaquinone methyltransferase' 17083.725 1 2.1.1.- ? ? ? 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 water nat water 18.015 258 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKTADLCDQFLDELQVCELPFQSYGGKRMFSGPIATVDVFEDNVLVREALETVPPGTVLVVDGKGSRRVALLGDRLAQIA CERGLAGVIIHGCIRDSAEIGAMPIGVMAIGTCPVKSKKEGKGARDVVLEFGGVRWEPGAYVYADADGVVVANKDLLAKN G ; _entity_poly.pdbx_seq_one_letter_code_can ;MKTADLCDQFLDELQVCELPFQSYGGKRMFSGPIATVDVFEDNVLVREALETVPPGTVLVVDGKGSRRVALLGDRLAQIA CERGLAGVIIHGCIRDSAEIGAMPIGVMAIGTCPVKSKKEGKGARDVVLEFGGVRWEPGAYVYADADGVVVANKDLLAKN G ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier gka001001813.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 THR n 1 4 ALA n 1 5 ASP n 1 6 LEU n 1 7 CYS n 1 8 ASP n 1 9 GLN n 1 10 PHE n 1 11 LEU n 1 12 ASP n 1 13 GLU n 1 14 LEU n 1 15 GLN n 1 16 VAL n 1 17 CYS n 1 18 GLU n 1 19 LEU n 1 20 PRO n 1 21 PHE n 1 22 GLN n 1 23 SER n 1 24 TYR n 1 25 GLY n 1 26 GLY n 1 27 LYS n 1 28 ARG n 1 29 MET n 1 30 PHE n 1 31 SER n 1 32 GLY n 1 33 PRO n 1 34 ILE n 1 35 ALA n 1 36 THR n 1 37 VAL n 1 38 ASP n 1 39 VAL n 1 40 PHE n 1 41 GLU n 1 42 ASP n 1 43 ASN n 1 44 VAL n 1 45 LEU n 1 46 VAL n 1 47 ARG n 1 48 GLU n 1 49 ALA n 1 50 LEU n 1 51 GLU n 1 52 THR n 1 53 VAL n 1 54 PRO n 1 55 PRO n 1 56 GLY n 1 57 THR n 1 58 VAL n 1 59 LEU n 1 60 VAL n 1 61 VAL n 1 62 ASP n 1 63 GLY n 1 64 LYS n 1 65 GLY n 1 66 SER n 1 67 ARG n 1 68 ARG n 1 69 VAL n 1 70 ALA n 1 71 LEU n 1 72 LEU n 1 73 GLY n 1 74 ASP n 1 75 ARG n 1 76 LEU n 1 77 ALA n 1 78 GLN n 1 79 ILE n 1 80 ALA n 1 81 CYS n 1 82 GLU n 1 83 ARG n 1 84 GLY n 1 85 LEU n 1 86 ALA n 1 87 GLY n 1 88 VAL n 1 89 ILE n 1 90 ILE n 1 91 HIS n 1 92 GLY n 1 93 CYS n 1 94 ILE n 1 95 ARG n 1 96 ASP n 1 97 SER n 1 98 ALA n 1 99 GLU n 1 100 ILE n 1 101 GLY n 1 102 ALA n 1 103 MET n 1 104 PRO n 1 105 ILE n 1 106 GLY n 1 107 VAL n 1 108 MET n 1 109 ALA n 1 110 ILE n 1 111 GLY n 1 112 THR n 1 113 CYS n 1 114 PRO n 1 115 VAL n 1 116 LYS n 1 117 SER n 1 118 LYS n 1 119 LYS n 1 120 GLU n 1 121 GLY n 1 122 LYS n 1 123 GLY n 1 124 ALA n 1 125 ARG n 1 126 ASP n 1 127 VAL n 1 128 VAL n 1 129 LEU n 1 130 GLU n 1 131 PHE n 1 132 GLY n 1 133 GLY n 1 134 VAL n 1 135 ARG n 1 136 TRP n 1 137 GLU n 1 138 PRO n 1 139 GLY n 1 140 ALA n 1 141 TYR n 1 142 VAL n 1 143 TYR n 1 144 ALA n 1 145 ASP n 1 146 ALA n 1 147 ASP n 1 148 GLY n 1 149 VAL n 1 150 VAL n 1 151 VAL n 1 152 ALA n 1 153 ASN n 1 154 LYS n 1 155 ASP n 1 156 LEU n 1 157 LEU n 1 158 ALA n 1 159 LYS n 1 160 ASN n 1 161 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Geobacillus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Geobacillus kaustophilus' _entity_src_gen.gene_src_strain HTA426 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacillus kaustophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 235909 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL-21 CONDON PLUS (DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5KYY8_GEOKA _struct_ref.pdbx_db_accession Q5KYY8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKTADLCDQFLDELQVCELPFQSYGGKRMFSGPIATVDVFEDNVLVREALETVPPGTVLVVDGKGSRRVALLGDRLAQIA CERGLAGVIIHGCIRDSAEIGAMPIGVMAIGTCPVKSKKEGKGARDVVLEFGGVRWEPGAYVYADADGVVVANKDLLAKN G ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2PCN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 161 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5KYY8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 161 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 163 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2PCN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.36 _exptl_crystal.density_percent_sol 63.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'OIL BATCH METHOD' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.1M SODIUM CACODYLATE TRIHYDRATE, 1.4M SODIUM ACETATE TRIHYDRATE, pH 6.5, OIL BATCH METHOD, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS V' _diffrn_detector.pdbx_collection_date 2006-12-11 _diffrn_detector.details 'RH COATED BENT-CYRINDRICAL MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI-1 1 1 DOUBLE CRYSTAL MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL45PX' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL45PX _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2PCN _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 1.9 _reflns.number_obs 17473 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rsym_value 0.084 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 13.1 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.210 _reflns_shell.pdbx_Rsym_value 0.204 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1747 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2PCN _refine.ls_number_reflns_obs 17396 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1778875.33 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.22 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 99.3 _refine.ls_R_factor_obs 0.176 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.176 _refine.ls_R_factor_R_free 0.205 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 1720 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 22.2 _refine.aniso_B[1][1] 1.92 _refine.aniso_B[2][2] 1.92 _refine.aniso_B[3][3] -3.84 _refine.aniso_B[1][2] 1.96 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.384546 _refine.solvent_model_param_bsol 64.8621 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1NXJ _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2PCN _refine_analyze.Luzzati_coordinate_error_obs 0.18 _refine_analyze.Luzzati_sigma_a_obs 0.14 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.22 _refine_analyze.Luzzati_sigma_a_free 0.17 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1193 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 258 _refine_hist.number_atoms_total 1455 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 36.22 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.004 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.6 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.72 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.66 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.30 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 4.41 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 6.25 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.99 _refine_ls_shell.number_reflns_R_work 1923 _refine_ls_shell.R_factor_R_work 0.207 _refine_ls_shell.percent_reflns_obs 97.4 _refine_ls_shell.R_factor_R_free 0.23 _refine_ls_shell.R_factor_R_free_error 0.016 _refine_ls_shell.percent_reflns_R_free 10.0 _refine_ls_shell.number_reflns_R_free 213 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 ligand.param ligand.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 5 water_rep.param water_protin.top 'X-RAY DIFFRACTION' # _struct.entry_id 2PCN _struct.title 'Crystal structure of S-adenosylmethionine: 2-dimethylmenaquinone methyltransferase (gk_1813) from geobacillus kaustophilus HTA426' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PCN _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;BETA, BETA ALPHA DOMAIN, 2-DIMETHYLMENAQUINONE METHYLTRANSFERASE, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 2 ? LEU A 11 ? LYS A 4 LEU A 13 1 ? 10 HELX_P HELX_P2 2 ASN A 43 ? VAL A 53 ? ASN A 45 VAL A 55 1 ? 11 HELX_P HELX_P3 3 GLY A 73 ? ARG A 83 ? GLY A 75 ARG A 85 1 ? 11 HELX_P HELX_P4 4 ASP A 96 ? GLY A 101 ? ASP A 98 GLY A 103 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 6 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 14 ? VAL A 16 ? LEU A 16 VAL A 18 A 2 GLY A 148 ? ALA A 152 ? GLY A 150 ALA A 154 A 3 TYR A 141 ? ASP A 145 ? TYR A 143 ASP A 147 A 4 PHE A 30 ? ASP A 38 ? PHE A 32 ASP A 40 A 5 VAL A 58 ? ASP A 62 ? VAL A 60 ASP A 64 A 6 GLY A 87 ? ILE A 94 ? GLY A 89 ILE A 96 A 7 ALA A 70 ? LEU A 72 ? ALA A 72 LEU A 74 B 1 GLN A 22 ? SER A 23 ? GLN A 24 SER A 25 B 2 GLY A 106 ? THR A 112 ? GLY A 108 THR A 114 B 3 GLY A 87 ? ILE A 94 ? GLY A 89 ILE A 96 B 4 VAL A 58 ? ASP A 62 ? VAL A 60 ASP A 64 B 5 PHE A 30 ? ASP A 38 ? PHE A 32 ASP A 40 B 6 ALA A 124 ? ARG A 125 ? ALA A 126 ARG A 127 C 1 LEU A 129 ? PHE A 131 ? LEU A 131 PHE A 133 C 2 VAL A 134 ? TRP A 136 ? VAL A 136 TRP A 138 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 15 ? N GLN A 17 O VAL A 151 ? O VAL A 153 A 2 3 O ALA A 152 ? O ALA A 154 N TYR A 141 ? N TYR A 143 A 3 4 O ALA A 144 ? O ALA A 146 N PHE A 30 ? N PHE A 32 A 4 5 N ALA A 35 ? N ALA A 37 O VAL A 60 ? O VAL A 62 A 5 6 N VAL A 61 ? N VAL A 63 O HIS A 91 ? O HIS A 93 A 6 7 O CYS A 93 ? O CYS A 95 N LEU A 71 ? N LEU A 73 B 1 2 N GLN A 22 ? N GLN A 24 O ALA A 109 ? O ALA A 111 B 2 3 O MET A 108 ? O MET A 110 N ILE A 90 ? N ILE A 92 B 3 4 O HIS A 91 ? O HIS A 93 N VAL A 61 ? N VAL A 63 B 4 5 O VAL A 60 ? O VAL A 62 N ALA A 35 ? N ALA A 37 B 5 6 N ASP A 38 ? N ASP A 40 O ALA A 124 ? O ALA A 126 C 1 2 N LEU A 129 ? N LEU A 131 O TRP A 136 ? O TRP A 138 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ACT _struct_site.pdbx_auth_seq_id 600 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE ACT A 600' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ASN A 43 ? ASN A 45 . ? 1_555 ? 2 AC1 8 ALA A 70 ? ALA A 72 . ? 1_555 ? 3 AC1 8 ARG A 75 ? ARG A 77 . ? 1_555 ? 4 AC1 8 ARG A 95 ? ARG A 97 . ? 1_555 ? 5 AC1 8 LYS A 116 ? LYS A 118 . ? 1_555 ? 6 AC1 8 SER A 117 ? SER A 119 . ? 1_555 ? 7 AC1 8 LYS A 119 ? LYS A 121 . ? 1_555 ? 8 AC1 8 HOH C . ? HOH A 796 . ? 1_555 ? # _database_PDB_matrix.entry_id 2PCN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2PCN _atom_sites.fract_transf_matrix[1][1] 0.011824 _atom_sites.fract_transf_matrix[1][2] 0.006827 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013653 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011999 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 3 3 MET MET A . n A 1 2 LYS 2 4 4 LYS LYS A . n A 1 3 THR 3 5 5 THR THR A . n A 1 4 ALA 4 6 6 ALA ALA A . n A 1 5 ASP 5 7 7 ASP ASP A . n A 1 6 LEU 6 8 8 LEU LEU A . n A 1 7 CYS 7 9 9 CYS CYS A . n A 1 8 ASP 8 10 10 ASP ASP A . n A 1 9 GLN 9 11 11 GLN GLN A . n A 1 10 PHE 10 12 12 PHE PHE A . n A 1 11 LEU 11 13 13 LEU LEU A . n A 1 12 ASP 12 14 14 ASP ASP A . n A 1 13 GLU 13 15 15 GLU GLU A . n A 1 14 LEU 14 16 16 LEU LEU A . n A 1 15 GLN 15 17 17 GLN GLN A . n A 1 16 VAL 16 18 18 VAL VAL A . n A 1 17 CYS 17 19 19 CYS CYS A . n A 1 18 GLU 18 20 20 GLU GLU A . n A 1 19 LEU 19 21 21 LEU LEU A . n A 1 20 PRO 20 22 22 PRO PRO A . n A 1 21 PHE 21 23 23 PHE PHE A . n A 1 22 GLN 22 24 24 GLN GLN A . n A 1 23 SER 23 25 25 SER SER A . n A 1 24 TYR 24 26 26 TYR TYR A . n A 1 25 GLY 25 27 27 GLY GLY A . n A 1 26 GLY 26 28 28 GLY GLY A . n A 1 27 LYS 27 29 29 LYS LYS A . n A 1 28 ARG 28 30 30 ARG ARG A . n A 1 29 MET 29 31 31 MET MET A . n A 1 30 PHE 30 32 32 PHE PHE A . n A 1 31 SER 31 33 33 SER SER A . n A 1 32 GLY 32 34 34 GLY GLY A . n A 1 33 PRO 33 35 35 PRO PRO A . n A 1 34 ILE 34 36 36 ILE ILE A . n A 1 35 ALA 35 37 37 ALA ALA A . n A 1 36 THR 36 38 38 THR THR A . n A 1 37 VAL 37 39 39 VAL VAL A . n A 1 38 ASP 38 40 40 ASP ASP A . n A 1 39 VAL 39 41 41 VAL VAL A . n A 1 40 PHE 40 42 42 PHE PHE A . n A 1 41 GLU 41 43 43 GLU GLU A . n A 1 42 ASP 42 44 44 ASP ASP A . n A 1 43 ASN 43 45 45 ASN ASN A . n A 1 44 VAL 44 46 46 VAL VAL A . n A 1 45 LEU 45 47 47 LEU LEU A . n A 1 46 VAL 46 48 48 VAL VAL A . n A 1 47 ARG 47 49 49 ARG ARG A . n A 1 48 GLU 48 50 50 GLU GLU A . n A 1 49 ALA 49 51 51 ALA ALA A . n A 1 50 LEU 50 52 52 LEU LEU A . n A 1 51 GLU 51 53 53 GLU GLU A . n A 1 52 THR 52 54 54 THR THR A . n A 1 53 VAL 53 55 55 VAL VAL A . n A 1 54 PRO 54 56 56 PRO PRO A . n A 1 55 PRO 55 57 57 PRO PRO A . n A 1 56 GLY 56 58 58 GLY GLY A . n A 1 57 THR 57 59 59 THR THR A . n A 1 58 VAL 58 60 60 VAL VAL A . n A 1 59 LEU 59 61 61 LEU LEU A . n A 1 60 VAL 60 62 62 VAL VAL A . n A 1 61 VAL 61 63 63 VAL VAL A . n A 1 62 ASP 62 64 64 ASP ASP A . n A 1 63 GLY 63 65 65 GLY GLY A . n A 1 64 LYS 64 66 66 LYS LYS A . n A 1 65 GLY 65 67 67 GLY GLY A . n A 1 66 SER 66 68 68 SER SER A . n A 1 67 ARG 67 69 69 ARG ARG A . n A 1 68 ARG 68 70 70 ARG ARG A . n A 1 69 VAL 69 71 71 VAL VAL A . n A 1 70 ALA 70 72 72 ALA ALA A . n A 1 71 LEU 71 73 73 LEU LEU A . n A 1 72 LEU 72 74 74 LEU LEU A . n A 1 73 GLY 73 75 75 GLY GLY A . n A 1 74 ASP 74 76 76 ASP ASP A . n A 1 75 ARG 75 77 77 ARG ARG A . n A 1 76 LEU 76 78 78 LEU LEU A . n A 1 77 ALA 77 79 79 ALA ALA A . n A 1 78 GLN 78 80 80 GLN GLN A . n A 1 79 ILE 79 81 81 ILE ILE A . n A 1 80 ALA 80 82 82 ALA ALA A . n A 1 81 CYS 81 83 83 CYS CYS A . n A 1 82 GLU 82 84 84 GLU GLU A . n A 1 83 ARG 83 85 85 ARG ARG A . n A 1 84 GLY 84 86 86 GLY GLY A . n A 1 85 LEU 85 87 87 LEU LEU A . n A 1 86 ALA 86 88 88 ALA ALA A . n A 1 87 GLY 87 89 89 GLY GLY A . n A 1 88 VAL 88 90 90 VAL VAL A . n A 1 89 ILE 89 91 91 ILE ILE A . n A 1 90 ILE 90 92 92 ILE ILE A . n A 1 91 HIS 91 93 93 HIS HIS A . n A 1 92 GLY 92 94 94 GLY GLY A . n A 1 93 CYS 93 95 95 CYS CYS A . n A 1 94 ILE 94 96 96 ILE ILE A . n A 1 95 ARG 95 97 97 ARG ARG A . n A 1 96 ASP 96 98 98 ASP ASP A . n A 1 97 SER 97 99 99 SER SER A . n A 1 98 ALA 98 100 100 ALA ALA A . n A 1 99 GLU 99 101 101 GLU GLU A . n A 1 100 ILE 100 102 102 ILE ILE A . n A 1 101 GLY 101 103 103 GLY GLY A . n A 1 102 ALA 102 104 104 ALA ALA A . n A 1 103 MET 103 105 105 MET MET A . n A 1 104 PRO 104 106 106 PRO PRO A . n A 1 105 ILE 105 107 107 ILE ILE A . n A 1 106 GLY 106 108 108 GLY GLY A . n A 1 107 VAL 107 109 109 VAL VAL A . n A 1 108 MET 108 110 110 MET MET A . n A 1 109 ALA 109 111 111 ALA ALA A . n A 1 110 ILE 110 112 112 ILE ILE A . n A 1 111 GLY 111 113 113 GLY GLY A . n A 1 112 THR 112 114 114 THR THR A . n A 1 113 CYS 113 115 115 CYS CYS A . n A 1 114 PRO 114 116 116 PRO PRO A . n A 1 115 VAL 115 117 117 VAL VAL A . n A 1 116 LYS 116 118 118 LYS LYS A . n A 1 117 SER 117 119 119 SER SER A . n A 1 118 LYS 118 120 120 LYS LYS A . n A 1 119 LYS 119 121 121 LYS LYS A . n A 1 120 GLU 120 122 122 GLU GLU A . n A 1 121 GLY 121 123 123 GLY GLY A . n A 1 122 LYS 122 124 124 LYS LYS A . n A 1 123 GLY 123 125 125 GLY GLY A . n A 1 124 ALA 124 126 126 ALA ALA A . n A 1 125 ARG 125 127 127 ARG ARG A . n A 1 126 ASP 126 128 128 ASP ASP A . n A 1 127 VAL 127 129 129 VAL VAL A . n A 1 128 VAL 128 130 130 VAL VAL A . n A 1 129 LEU 129 131 131 LEU LEU A . n A 1 130 GLU 130 132 132 GLU GLU A . n A 1 131 PHE 131 133 133 PHE PHE A . n A 1 132 GLY 132 134 134 GLY GLY A . n A 1 133 GLY 133 135 135 GLY GLY A . n A 1 134 VAL 134 136 136 VAL VAL A . n A 1 135 ARG 135 137 137 ARG ARG A . n A 1 136 TRP 136 138 138 TRP TRP A . n A 1 137 GLU 137 139 139 GLU GLU A . n A 1 138 PRO 138 140 140 PRO PRO A . n A 1 139 GLY 139 141 141 GLY GLY A . n A 1 140 ALA 140 142 142 ALA ALA A . n A 1 141 TYR 141 143 143 TYR TYR A . n A 1 142 VAL 142 144 144 VAL VAL A . n A 1 143 TYR 143 145 145 TYR TYR A . n A 1 144 ALA 144 146 146 ALA ALA A . n A 1 145 ASP 145 147 147 ASP ASP A . n A 1 146 ALA 146 148 148 ALA ALA A . n A 1 147 ASP 147 149 149 ASP ASP A . n A 1 148 GLY 148 150 150 GLY GLY A . n A 1 149 VAL 149 151 151 VAL VAL A . n A 1 150 VAL 150 152 152 VAL VAL A . n A 1 151 VAL 151 153 153 VAL VAL A . n A 1 152 ALA 152 154 154 ALA ALA A . n A 1 153 ASN 153 155 155 ASN ASN A . n A 1 154 LYS 154 156 156 LYS LYS A . n A 1 155 ASP 155 157 157 ASP ASP A . n A 1 156 LEU 156 158 158 LEU LEU A . n A 1 157 LEU 157 159 159 LEU LEU A . n A 1 158 ALA 158 160 160 ALA ALA A . n A 1 159 LYS 159 161 161 LYS LYS A . n A 1 160 ASN 160 162 162 ASN ASN A . n A 1 161 GLY 161 163 163 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 600 600 ACT ACT A . C 3 HOH 1 601 201 HOH HOH A . C 3 HOH 2 602 202 HOH HOH A . C 3 HOH 3 603 203 HOH HOH A . C 3 HOH 4 604 204 HOH HOH A . C 3 HOH 5 605 205 HOH HOH A . C 3 HOH 6 606 206 HOH HOH A . C 3 HOH 7 607 207 HOH HOH A . C 3 HOH 8 608 208 HOH HOH A . C 3 HOH 9 609 209 HOH HOH A . C 3 HOH 10 610 210 HOH HOH A . C 3 HOH 11 611 211 HOH HOH A . C 3 HOH 12 612 212 HOH HOH A . C 3 HOH 13 613 213 HOH HOH A . C 3 HOH 14 614 214 HOH HOH A . C 3 HOH 15 615 215 HOH HOH A . C 3 HOH 16 616 216 HOH HOH A . C 3 HOH 17 617 217 HOH HOH A . C 3 HOH 18 618 218 HOH HOH A . C 3 HOH 19 619 219 HOH HOH A . C 3 HOH 20 620 220 HOH HOH A . C 3 HOH 21 621 221 HOH HOH A . C 3 HOH 22 622 222 HOH HOH A . C 3 HOH 23 623 223 HOH HOH A . C 3 HOH 24 624 224 HOH HOH A . C 3 HOH 25 625 225 HOH HOH A . C 3 HOH 26 626 226 HOH HOH A . C 3 HOH 27 627 227 HOH HOH A . C 3 HOH 28 628 228 HOH HOH A . C 3 HOH 29 629 229 HOH HOH A . C 3 HOH 30 630 230 HOH HOH A . C 3 HOH 31 631 231 HOH HOH A . C 3 HOH 32 632 232 HOH HOH A . C 3 HOH 33 633 233 HOH HOH A . C 3 HOH 34 634 234 HOH HOH A . C 3 HOH 35 635 235 HOH HOH A . C 3 HOH 36 636 236 HOH HOH A . C 3 HOH 37 637 237 HOH HOH A . C 3 HOH 38 638 238 HOH HOH A . C 3 HOH 39 639 239 HOH HOH A . C 3 HOH 40 640 240 HOH HOH A . C 3 HOH 41 641 241 HOH HOH A . C 3 HOH 42 642 242 HOH HOH A . C 3 HOH 43 643 243 HOH HOH A . C 3 HOH 44 644 244 HOH HOH A . C 3 HOH 45 645 245 HOH HOH A . C 3 HOH 46 646 246 HOH HOH A . C 3 HOH 47 647 247 HOH HOH A . C 3 HOH 48 648 248 HOH HOH A . C 3 HOH 49 649 249 HOH HOH A . C 3 HOH 50 650 250 HOH HOH A . C 3 HOH 51 651 251 HOH HOH A . C 3 HOH 52 652 252 HOH HOH A . C 3 HOH 53 653 253 HOH HOH A . C 3 HOH 54 654 254 HOH HOH A . C 3 HOH 55 655 255 HOH HOH A . C 3 HOH 56 656 256 HOH HOH A . C 3 HOH 57 657 257 HOH HOH A . C 3 HOH 58 658 258 HOH HOH A . C 3 HOH 59 659 259 HOH HOH A . C 3 HOH 60 660 260 HOH HOH A . C 3 HOH 61 661 261 HOH HOH A . C 3 HOH 62 662 262 HOH HOH A . C 3 HOH 63 663 263 HOH HOH A . C 3 HOH 64 664 264 HOH HOH A . C 3 HOH 65 665 265 HOH HOH A . C 3 HOH 66 666 266 HOH HOH A . C 3 HOH 67 667 267 HOH HOH A . C 3 HOH 68 668 268 HOH HOH A . C 3 HOH 69 669 269 HOH HOH A . C 3 HOH 70 670 270 HOH HOH A . C 3 HOH 71 671 271 HOH HOH A . C 3 HOH 72 672 272 HOH HOH A . C 3 HOH 73 673 273 HOH HOH A . C 3 HOH 74 674 274 HOH HOH A . C 3 HOH 75 675 275 HOH HOH A . C 3 HOH 76 676 276 HOH HOH A . C 3 HOH 77 677 277 HOH HOH A . C 3 HOH 78 678 278 HOH HOH A . C 3 HOH 79 679 279 HOH HOH A . C 3 HOH 80 680 280 HOH HOH A . C 3 HOH 81 681 281 HOH HOH A . C 3 HOH 82 682 282 HOH HOH A . C 3 HOH 83 683 283 HOH HOH A . C 3 HOH 84 684 284 HOH HOH A . C 3 HOH 85 685 285 HOH HOH A . C 3 HOH 86 686 286 HOH HOH A . C 3 HOH 87 687 287 HOH HOH A . C 3 HOH 88 688 288 HOH HOH A . C 3 HOH 89 689 289 HOH HOH A . C 3 HOH 90 690 290 HOH HOH A . C 3 HOH 91 691 291 HOH HOH A . C 3 HOH 92 692 292 HOH HOH A . C 3 HOH 93 693 293 HOH HOH A . C 3 HOH 94 694 294 HOH HOH A . C 3 HOH 95 695 295 HOH HOH A . C 3 HOH 96 696 296 HOH HOH A . C 3 HOH 97 697 297 HOH HOH A . C 3 HOH 98 698 298 HOH HOH A . C 3 HOH 99 699 299 HOH HOH A . C 3 HOH 100 700 300 HOH HOH A . C 3 HOH 101 701 301 HOH HOH A . C 3 HOH 102 702 302 HOH HOH A . C 3 HOH 103 703 303 HOH HOH A . C 3 HOH 104 704 304 HOH HOH A . C 3 HOH 105 705 305 HOH HOH A . C 3 HOH 106 706 306 HOH HOH A . C 3 HOH 107 707 307 HOH HOH A . C 3 HOH 108 708 308 HOH HOH A . C 3 HOH 109 709 309 HOH HOH A . C 3 HOH 110 710 310 HOH HOH A . C 3 HOH 111 711 311 HOH HOH A . C 3 HOH 112 712 312 HOH HOH A . C 3 HOH 113 713 313 HOH HOH A . C 3 HOH 114 714 314 HOH HOH A . C 3 HOH 115 715 315 HOH HOH A . C 3 HOH 116 716 316 HOH HOH A . C 3 HOH 117 717 317 HOH HOH A . C 3 HOH 118 718 318 HOH HOH A . C 3 HOH 119 719 319 HOH HOH A . C 3 HOH 120 720 320 HOH HOH A . C 3 HOH 121 721 321 HOH HOH A . C 3 HOH 122 722 322 HOH HOH A . C 3 HOH 123 723 323 HOH HOH A . C 3 HOH 124 724 324 HOH HOH A . C 3 HOH 125 725 325 HOH HOH A . C 3 HOH 126 726 326 HOH HOH A . C 3 HOH 127 727 327 HOH HOH A . C 3 HOH 128 728 328 HOH HOH A . C 3 HOH 129 729 329 HOH HOH A . C 3 HOH 130 730 330 HOH HOH A . C 3 HOH 131 731 331 HOH HOH A . C 3 HOH 132 732 332 HOH HOH A . C 3 HOH 133 733 333 HOH HOH A . C 3 HOH 134 734 334 HOH HOH A . C 3 HOH 135 735 335 HOH HOH A . C 3 HOH 136 736 336 HOH HOH A . C 3 HOH 137 737 337 HOH HOH A . C 3 HOH 138 738 338 HOH HOH A . C 3 HOH 139 739 339 HOH HOH A . C 3 HOH 140 740 340 HOH HOH A . C 3 HOH 141 741 341 HOH HOH A . C 3 HOH 142 742 342 HOH HOH A . C 3 HOH 143 743 343 HOH HOH A . C 3 HOH 144 744 344 HOH HOH A . C 3 HOH 145 745 345 HOH HOH A . C 3 HOH 146 746 346 HOH HOH A . C 3 HOH 147 747 347 HOH HOH A . C 3 HOH 148 748 348 HOH HOH A . C 3 HOH 149 749 349 HOH HOH A . C 3 HOH 150 750 350 HOH HOH A . C 3 HOH 151 751 351 HOH HOH A . C 3 HOH 152 752 352 HOH HOH A . C 3 HOH 153 753 353 HOH HOH A . C 3 HOH 154 754 354 HOH HOH A . C 3 HOH 155 755 355 HOH HOH A . C 3 HOH 156 756 356 HOH HOH A . C 3 HOH 157 757 357 HOH HOH A . C 3 HOH 158 758 358 HOH HOH A . C 3 HOH 159 759 359 HOH HOH A . C 3 HOH 160 760 360 HOH HOH A . C 3 HOH 161 761 361 HOH HOH A . C 3 HOH 162 762 362 HOH HOH A . C 3 HOH 163 763 363 HOH HOH A . C 3 HOH 164 764 364 HOH HOH A . C 3 HOH 165 765 365 HOH HOH A . C 3 HOH 166 766 366 HOH HOH A . C 3 HOH 167 767 367 HOH HOH A . C 3 HOH 168 768 368 HOH HOH A . C 3 HOH 169 769 369 HOH HOH A . C 3 HOH 170 770 370 HOH HOH A . C 3 HOH 171 771 371 HOH HOH A . C 3 HOH 172 772 372 HOH HOH A . C 3 HOH 173 773 373 HOH HOH A . C 3 HOH 174 774 374 HOH HOH A . C 3 HOH 175 775 375 HOH HOH A . C 3 HOH 176 776 376 HOH HOH A . C 3 HOH 177 777 377 HOH HOH A . C 3 HOH 178 778 378 HOH HOH A . C 3 HOH 179 779 379 HOH HOH A . C 3 HOH 180 780 380 HOH HOH A . C 3 HOH 181 781 381 HOH HOH A . C 3 HOH 182 782 382 HOH HOH A . C 3 HOH 183 783 383 HOH HOH A . C 3 HOH 184 784 384 HOH HOH A . C 3 HOH 185 785 385 HOH HOH A . C 3 HOH 186 786 386 HOH HOH A . C 3 HOH 187 787 387 HOH HOH A . C 3 HOH 188 788 388 HOH HOH A . C 3 HOH 189 789 389 HOH HOH A . C 3 HOH 190 790 390 HOH HOH A . C 3 HOH 191 791 391 HOH HOH A . C 3 HOH 192 792 392 HOH HOH A . C 3 HOH 193 793 393 HOH HOH A . C 3 HOH 194 794 394 HOH HOH A . C 3 HOH 195 795 395 HOH HOH A . C 3 HOH 196 796 396 HOH HOH A . C 3 HOH 197 797 397 HOH HOH A . C 3 HOH 198 798 398 HOH HOH A . C 3 HOH 199 799 399 HOH HOH A . C 3 HOH 200 800 400 HOH HOH A . C 3 HOH 201 801 401 HOH HOH A . C 3 HOH 202 802 402 HOH HOH A . C 3 HOH 203 803 403 HOH HOH A . C 3 HOH 204 804 404 HOH HOH A . C 3 HOH 205 805 405 HOH HOH A . C 3 HOH 206 806 406 HOH HOH A . C 3 HOH 207 807 407 HOH HOH A . C 3 HOH 208 808 408 HOH HOH A . C 3 HOH 209 809 409 HOH HOH A . C 3 HOH 210 810 410 HOH HOH A . C 3 HOH 211 811 411 HOH HOH A . C 3 HOH 212 812 412 HOH HOH A . C 3 HOH 213 813 413 HOH HOH A . C 3 HOH 214 814 414 HOH HOH A . C 3 HOH 215 815 415 HOH HOH A . C 3 HOH 216 816 416 HOH HOH A . C 3 HOH 217 817 417 HOH HOH A . C 3 HOH 218 818 418 HOH HOH A . C 3 HOH 219 819 419 HOH HOH A . C 3 HOH 220 820 420 HOH HOH A . C 3 HOH 221 821 421 HOH HOH A . C 3 HOH 222 822 422 HOH HOH A . C 3 HOH 223 823 423 HOH HOH A . C 3 HOH 224 824 424 HOH HOH A . C 3 HOH 225 825 425 HOH HOH A . C 3 HOH 226 826 426 HOH HOH A . C 3 HOH 227 827 427 HOH HOH A . C 3 HOH 228 828 428 HOH HOH A . C 3 HOH 229 829 429 HOH HOH A . C 3 HOH 230 830 430 HOH HOH A . C 3 HOH 231 831 431 HOH HOH A . C 3 HOH 232 832 432 HOH HOH A . C 3 HOH 233 833 433 HOH HOH A . C 3 HOH 234 834 434 HOH HOH A . C 3 HOH 235 835 435 HOH HOH A . C 3 HOH 236 836 436 HOH HOH A . C 3 HOH 237 837 437 HOH HOH A . C 3 HOH 238 838 438 HOH HOH A . C 3 HOH 239 839 439 HOH HOH A . C 3 HOH 240 840 440 HOH HOH A . C 3 HOH 241 841 441 HOH HOH A . C 3 HOH 242 842 442 HOH HOH A . C 3 HOH 243 843 443 HOH HOH A . C 3 HOH 244 844 444 HOH HOH A . C 3 HOH 245 845 445 HOH HOH A . C 3 HOH 246 846 446 HOH HOH A . C 3 HOH 247 847 447 HOH HOH A . C 3 HOH 248 848 448 HOH HOH A . C 3 HOH 249 849 449 HOH HOH A . C 3 HOH 250 850 450 HOH HOH A . C 3 HOH 251 851 451 HOH HOH A . C 3 HOH 252 852 452 HOH HOH A . C 3 HOH 253 853 453 HOH HOH A . C 3 HOH 254 854 454 HOH HOH A . C 3 HOH 255 855 455 HOH HOH A . C 3 HOH 256 856 456 HOH HOH A . C 3 HOH 257 857 457 HOH HOH A . C 3 HOH 258 858 458 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-18 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 MOLREP phasing . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 162 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -144.01 _pdbx_validate_torsion.psi -14.79 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 CYS N N N N 81 CYS CA C N R 82 CYS C C N N 83 CYS O O N N 84 CYS CB C N N 85 CYS SG S N N 86 CYS OXT O N N 87 CYS H H N N 88 CYS H2 H N N 89 CYS HA H N N 90 CYS HB2 H N N 91 CYS HB3 H N N 92 CYS HG H N N 93 CYS HXT H N N 94 GLN N N N N 95 GLN CA C N S 96 GLN C C N N 97 GLN O O N N 98 GLN CB C N N 99 GLN CG C N N 100 GLN CD C N N 101 GLN OE1 O N N 102 GLN NE2 N N N 103 GLN OXT O N N 104 GLN H H N N 105 GLN H2 H N N 106 GLN HA H N N 107 GLN HB2 H N N 108 GLN HB3 H N N 109 GLN HG2 H N N 110 GLN HG3 H N N 111 GLN HE21 H N N 112 GLN HE22 H N N 113 GLN HXT H N N 114 GLU N N N N 115 GLU CA C N S 116 GLU C C N N 117 GLU O O N N 118 GLU CB C N N 119 GLU CG C N N 120 GLU CD C N N 121 GLU OE1 O N N 122 GLU OE2 O N N 123 GLU OXT O N N 124 GLU H H N N 125 GLU H2 H N N 126 GLU HA H N N 127 GLU HB2 H N N 128 GLU HB3 H N N 129 GLU HG2 H N N 130 GLU HG3 H N N 131 GLU HE2 H N N 132 GLU HXT H N N 133 GLY N N N N 134 GLY CA C N N 135 GLY C C N N 136 GLY O O N N 137 GLY OXT O N N 138 GLY H H N N 139 GLY H2 H N N 140 GLY HA2 H N N 141 GLY HA3 H N N 142 GLY HXT H N N 143 HIS N N N N 144 HIS CA C N S 145 HIS C C N N 146 HIS O O N N 147 HIS CB C N N 148 HIS CG C Y N 149 HIS ND1 N Y N 150 HIS CD2 C Y N 151 HIS CE1 C Y N 152 HIS NE2 N Y N 153 HIS OXT O N N 154 HIS H H N N 155 HIS H2 H N N 156 HIS HA H N N 157 HIS HB2 H N N 158 HIS HB3 H N N 159 HIS HD1 H N N 160 HIS HD2 H N N 161 HIS HE1 H N N 162 HIS HE2 H N N 163 HIS HXT H N N 164 HOH O O N N 165 HOH H1 H N N 166 HOH H2 H N N 167 ILE N N N N 168 ILE CA C N S 169 ILE C C N N 170 ILE O O N N 171 ILE CB C N S 172 ILE CG1 C N N 173 ILE CG2 C N N 174 ILE CD1 C N N 175 ILE OXT O N N 176 ILE H H N N 177 ILE H2 H N N 178 ILE HA H N N 179 ILE HB H N N 180 ILE HG12 H N N 181 ILE HG13 H N N 182 ILE HG21 H N N 183 ILE HG22 H N N 184 ILE HG23 H N N 185 ILE HD11 H N N 186 ILE HD12 H N N 187 ILE HD13 H N N 188 ILE HXT H N N 189 LEU N N N N 190 LEU CA C N S 191 LEU C C N N 192 LEU O O N N 193 LEU CB C N N 194 LEU CG C N N 195 LEU CD1 C N N 196 LEU CD2 C N N 197 LEU OXT O N N 198 LEU H H N N 199 LEU H2 H N N 200 LEU HA H N N 201 LEU HB2 H N N 202 LEU HB3 H N N 203 LEU HG H N N 204 LEU HD11 H N N 205 LEU HD12 H N N 206 LEU HD13 H N N 207 LEU HD21 H N N 208 LEU HD22 H N N 209 LEU HD23 H N N 210 LEU HXT H N N 211 LYS N N N N 212 LYS CA C N S 213 LYS C C N N 214 LYS O O N N 215 LYS CB C N N 216 LYS CG C N N 217 LYS CD C N N 218 LYS CE C N N 219 LYS NZ N N N 220 LYS OXT O N N 221 LYS H H N N 222 LYS H2 H N N 223 LYS HA H N N 224 LYS HB2 H N N 225 LYS HB3 H N N 226 LYS HG2 H N N 227 LYS HG3 H N N 228 LYS HD2 H N N 229 LYS HD3 H N N 230 LYS HE2 H N N 231 LYS HE3 H N N 232 LYS HZ1 H N N 233 LYS HZ2 H N N 234 LYS HZ3 H N N 235 LYS HXT H N N 236 MET N N N N 237 MET CA C N S 238 MET C C N N 239 MET O O N N 240 MET CB C N N 241 MET CG C N N 242 MET SD S N N 243 MET CE C N N 244 MET OXT O N N 245 MET H H N N 246 MET H2 H N N 247 MET HA H N N 248 MET HB2 H N N 249 MET HB3 H N N 250 MET HG2 H N N 251 MET HG3 H N N 252 MET HE1 H N N 253 MET HE2 H N N 254 MET HE3 H N N 255 MET HXT H N N 256 PHE N N N N 257 PHE CA C N S 258 PHE C C N N 259 PHE O O N N 260 PHE CB C N N 261 PHE CG C Y N 262 PHE CD1 C Y N 263 PHE CD2 C Y N 264 PHE CE1 C Y N 265 PHE CE2 C Y N 266 PHE CZ C Y N 267 PHE OXT O N N 268 PHE H H N N 269 PHE H2 H N N 270 PHE HA H N N 271 PHE HB2 H N N 272 PHE HB3 H N N 273 PHE HD1 H N N 274 PHE HD2 H N N 275 PHE HE1 H N N 276 PHE HE2 H N N 277 PHE HZ H N N 278 PHE HXT H N N 279 PRO N N N N 280 PRO CA C N S 281 PRO C C N N 282 PRO O O N N 283 PRO CB C N N 284 PRO CG C N N 285 PRO CD C N N 286 PRO OXT O N N 287 PRO H H N N 288 PRO HA H N N 289 PRO HB2 H N N 290 PRO HB3 H N N 291 PRO HG2 H N N 292 PRO HG3 H N N 293 PRO HD2 H N N 294 PRO HD3 H N N 295 PRO HXT H N N 296 SER N N N N 297 SER CA C N S 298 SER C C N N 299 SER O O N N 300 SER CB C N N 301 SER OG O N N 302 SER OXT O N N 303 SER H H N N 304 SER H2 H N N 305 SER HA H N N 306 SER HB2 H N N 307 SER HB3 H N N 308 SER HG H N N 309 SER HXT H N N 310 THR N N N N 311 THR CA C N S 312 THR C C N N 313 THR O O N N 314 THR CB C N R 315 THR OG1 O N N 316 THR CG2 C N N 317 THR OXT O N N 318 THR H H N N 319 THR H2 H N N 320 THR HA H N N 321 THR HB H N N 322 THR HG1 H N N 323 THR HG21 H N N 324 THR HG22 H N N 325 THR HG23 H N N 326 THR HXT H N N 327 TRP N N N N 328 TRP CA C N S 329 TRP C C N N 330 TRP O O N N 331 TRP CB C N N 332 TRP CG C Y N 333 TRP CD1 C Y N 334 TRP CD2 C Y N 335 TRP NE1 N Y N 336 TRP CE2 C Y N 337 TRP CE3 C Y N 338 TRP CZ2 C Y N 339 TRP CZ3 C Y N 340 TRP CH2 C Y N 341 TRP OXT O N N 342 TRP H H N N 343 TRP H2 H N N 344 TRP HA H N N 345 TRP HB2 H N N 346 TRP HB3 H N N 347 TRP HD1 H N N 348 TRP HE1 H N N 349 TRP HE3 H N N 350 TRP HZ2 H N N 351 TRP HZ3 H N N 352 TRP HH2 H N N 353 TRP HXT H N N 354 TYR N N N N 355 TYR CA C N S 356 TYR C C N N 357 TYR O O N N 358 TYR CB C N N 359 TYR CG C Y N 360 TYR CD1 C Y N 361 TYR CD2 C Y N 362 TYR CE1 C Y N 363 TYR CE2 C Y N 364 TYR CZ C Y N 365 TYR OH O N N 366 TYR OXT O N N 367 TYR H H N N 368 TYR H2 H N N 369 TYR HA H N N 370 TYR HB2 H N N 371 TYR HB3 H N N 372 TYR HD1 H N N 373 TYR HD2 H N N 374 TYR HE1 H N N 375 TYR HE2 H N N 376 TYR HH H N N 377 TYR HXT H N N 378 VAL N N N N 379 VAL CA C N S 380 VAL C C N N 381 VAL O O N N 382 VAL CB C N N 383 VAL CG1 C N N 384 VAL CG2 C N N 385 VAL OXT O N N 386 VAL H H N N 387 VAL H2 H N N 388 VAL HA H N N 389 VAL HB H N N 390 VAL HG11 H N N 391 VAL HG12 H N N 392 VAL HG13 H N N 393 VAL HG21 H N N 394 VAL HG22 H N N 395 VAL HG23 H N N 396 VAL HXT H N N 397 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 CYS N CA sing N N 76 CYS N H sing N N 77 CYS N H2 sing N N 78 CYS CA C sing N N 79 CYS CA CB sing N N 80 CYS CA HA sing N N 81 CYS C O doub N N 82 CYS C OXT sing N N 83 CYS CB SG sing N N 84 CYS CB HB2 sing N N 85 CYS CB HB3 sing N N 86 CYS SG HG sing N N 87 CYS OXT HXT sing N N 88 GLN N CA sing N N 89 GLN N H sing N N 90 GLN N H2 sing N N 91 GLN CA C sing N N 92 GLN CA CB sing N N 93 GLN CA HA sing N N 94 GLN C O doub N N 95 GLN C OXT sing N N 96 GLN CB CG sing N N 97 GLN CB HB2 sing N N 98 GLN CB HB3 sing N N 99 GLN CG CD sing N N 100 GLN CG HG2 sing N N 101 GLN CG HG3 sing N N 102 GLN CD OE1 doub N N 103 GLN CD NE2 sing N N 104 GLN NE2 HE21 sing N N 105 GLN NE2 HE22 sing N N 106 GLN OXT HXT sing N N 107 GLU N CA sing N N 108 GLU N H sing N N 109 GLU N H2 sing N N 110 GLU CA C sing N N 111 GLU CA CB sing N N 112 GLU CA HA sing N N 113 GLU C O doub N N 114 GLU C OXT sing N N 115 GLU CB CG sing N N 116 GLU CB HB2 sing N N 117 GLU CB HB3 sing N N 118 GLU CG CD sing N N 119 GLU CG HG2 sing N N 120 GLU CG HG3 sing N N 121 GLU CD OE1 doub N N 122 GLU CD OE2 sing N N 123 GLU OE2 HE2 sing N N 124 GLU OXT HXT sing N N 125 GLY N CA sing N N 126 GLY N H sing N N 127 GLY N H2 sing N N 128 GLY CA C sing N N 129 GLY CA HA2 sing N N 130 GLY CA HA3 sing N N 131 GLY C O doub N N 132 GLY C OXT sing N N 133 GLY OXT HXT sing N N 134 HIS N CA sing N N 135 HIS N H sing N N 136 HIS N H2 sing N N 137 HIS CA C sing N N 138 HIS CA CB sing N N 139 HIS CA HA sing N N 140 HIS C O doub N N 141 HIS C OXT sing N N 142 HIS CB CG sing N N 143 HIS CB HB2 sing N N 144 HIS CB HB3 sing N N 145 HIS CG ND1 sing Y N 146 HIS CG CD2 doub Y N 147 HIS ND1 CE1 doub Y N 148 HIS ND1 HD1 sing N N 149 HIS CD2 NE2 sing Y N 150 HIS CD2 HD2 sing N N 151 HIS CE1 NE2 sing Y N 152 HIS CE1 HE1 sing N N 153 HIS NE2 HE2 sing N N 154 HIS OXT HXT sing N N 155 HOH O H1 sing N N 156 HOH O H2 sing N N 157 ILE N CA sing N N 158 ILE N H sing N N 159 ILE N H2 sing N N 160 ILE CA C sing N N 161 ILE CA CB sing N N 162 ILE CA HA sing N N 163 ILE C O doub N N 164 ILE C OXT sing N N 165 ILE CB CG1 sing N N 166 ILE CB CG2 sing N N 167 ILE CB HB sing N N 168 ILE CG1 CD1 sing N N 169 ILE CG1 HG12 sing N N 170 ILE CG1 HG13 sing N N 171 ILE CG2 HG21 sing N N 172 ILE CG2 HG22 sing N N 173 ILE CG2 HG23 sing N N 174 ILE CD1 HD11 sing N N 175 ILE CD1 HD12 sing N N 176 ILE CD1 HD13 sing N N 177 ILE OXT HXT sing N N 178 LEU N CA sing N N 179 LEU N H sing N N 180 LEU N H2 sing N N 181 LEU CA C sing N N 182 LEU CA CB sing N N 183 LEU CA HA sing N N 184 LEU C O doub N N 185 LEU C OXT sing N N 186 LEU CB CG sing N N 187 LEU CB HB2 sing N N 188 LEU CB HB3 sing N N 189 LEU CG CD1 sing N N 190 LEU CG CD2 sing N N 191 LEU CG HG sing N N 192 LEU CD1 HD11 sing N N 193 LEU CD1 HD12 sing N N 194 LEU CD1 HD13 sing N N 195 LEU CD2 HD21 sing N N 196 LEU CD2 HD22 sing N N 197 LEU CD2 HD23 sing N N 198 LEU OXT HXT sing N N 199 LYS N CA sing N N 200 LYS N H sing N N 201 LYS N H2 sing N N 202 LYS CA C sing N N 203 LYS CA CB sing N N 204 LYS CA HA sing N N 205 LYS C O doub N N 206 LYS C OXT sing N N 207 LYS CB CG sing N N 208 LYS CB HB2 sing N N 209 LYS CB HB3 sing N N 210 LYS CG CD sing N N 211 LYS CG HG2 sing N N 212 LYS CG HG3 sing N N 213 LYS CD CE sing N N 214 LYS CD HD2 sing N N 215 LYS CD HD3 sing N N 216 LYS CE NZ sing N N 217 LYS CE HE2 sing N N 218 LYS CE HE3 sing N N 219 LYS NZ HZ1 sing N N 220 LYS NZ HZ2 sing N N 221 LYS NZ HZ3 sing N N 222 LYS OXT HXT sing N N 223 MET N CA sing N N 224 MET N H sing N N 225 MET N H2 sing N N 226 MET CA C sing N N 227 MET CA CB sing N N 228 MET CA HA sing N N 229 MET C O doub N N 230 MET C OXT sing N N 231 MET CB CG sing N N 232 MET CB HB2 sing N N 233 MET CB HB3 sing N N 234 MET CG SD sing N N 235 MET CG HG2 sing N N 236 MET CG HG3 sing N N 237 MET SD CE sing N N 238 MET CE HE1 sing N N 239 MET CE HE2 sing N N 240 MET CE HE3 sing N N 241 MET OXT HXT sing N N 242 PHE N CA sing N N 243 PHE N H sing N N 244 PHE N H2 sing N N 245 PHE CA C sing N N 246 PHE CA CB sing N N 247 PHE CA HA sing N N 248 PHE C O doub N N 249 PHE C OXT sing N N 250 PHE CB CG sing N N 251 PHE CB HB2 sing N N 252 PHE CB HB3 sing N N 253 PHE CG CD1 doub Y N 254 PHE CG CD2 sing Y N 255 PHE CD1 CE1 sing Y N 256 PHE CD1 HD1 sing N N 257 PHE CD2 CE2 doub Y N 258 PHE CD2 HD2 sing N N 259 PHE CE1 CZ doub Y N 260 PHE CE1 HE1 sing N N 261 PHE CE2 CZ sing Y N 262 PHE CE2 HE2 sing N N 263 PHE CZ HZ sing N N 264 PHE OXT HXT sing N N 265 PRO N CA sing N N 266 PRO N CD sing N N 267 PRO N H sing N N 268 PRO CA C sing N N 269 PRO CA CB sing N N 270 PRO CA HA sing N N 271 PRO C O doub N N 272 PRO C OXT sing N N 273 PRO CB CG sing N N 274 PRO CB HB2 sing N N 275 PRO CB HB3 sing N N 276 PRO CG CD sing N N 277 PRO CG HG2 sing N N 278 PRO CG HG3 sing N N 279 PRO CD HD2 sing N N 280 PRO CD HD3 sing N N 281 PRO OXT HXT sing N N 282 SER N CA sing N N 283 SER N H sing N N 284 SER N H2 sing N N 285 SER CA C sing N N 286 SER CA CB sing N N 287 SER CA HA sing N N 288 SER C O doub N N 289 SER C OXT sing N N 290 SER CB OG sing N N 291 SER CB HB2 sing N N 292 SER CB HB3 sing N N 293 SER OG HG sing N N 294 SER OXT HXT sing N N 295 THR N CA sing N N 296 THR N H sing N N 297 THR N H2 sing N N 298 THR CA C sing N N 299 THR CA CB sing N N 300 THR CA HA sing N N 301 THR C O doub N N 302 THR C OXT sing N N 303 THR CB OG1 sing N N 304 THR CB CG2 sing N N 305 THR CB HB sing N N 306 THR OG1 HG1 sing N N 307 THR CG2 HG21 sing N N 308 THR CG2 HG22 sing N N 309 THR CG2 HG23 sing N N 310 THR OXT HXT sing N N 311 TRP N CA sing N N 312 TRP N H sing N N 313 TRP N H2 sing N N 314 TRP CA C sing N N 315 TRP CA CB sing N N 316 TRP CA HA sing N N 317 TRP C O doub N N 318 TRP C OXT sing N N 319 TRP CB CG sing N N 320 TRP CB HB2 sing N N 321 TRP CB HB3 sing N N 322 TRP CG CD1 doub Y N 323 TRP CG CD2 sing Y N 324 TRP CD1 NE1 sing Y N 325 TRP CD1 HD1 sing N N 326 TRP CD2 CE2 doub Y N 327 TRP CD2 CE3 sing Y N 328 TRP NE1 CE2 sing Y N 329 TRP NE1 HE1 sing N N 330 TRP CE2 CZ2 sing Y N 331 TRP CE3 CZ3 doub Y N 332 TRP CE3 HE3 sing N N 333 TRP CZ2 CH2 doub Y N 334 TRP CZ2 HZ2 sing N N 335 TRP CZ3 CH2 sing Y N 336 TRP CZ3 HZ3 sing N N 337 TRP CH2 HH2 sing N N 338 TRP OXT HXT sing N N 339 TYR N CA sing N N 340 TYR N H sing N N 341 TYR N H2 sing N N 342 TYR CA C sing N N 343 TYR CA CB sing N N 344 TYR CA HA sing N N 345 TYR C O doub N N 346 TYR C OXT sing N N 347 TYR CB CG sing N N 348 TYR CB HB2 sing N N 349 TYR CB HB3 sing N N 350 TYR CG CD1 doub Y N 351 TYR CG CD2 sing Y N 352 TYR CD1 CE1 sing Y N 353 TYR CD1 HD1 sing N N 354 TYR CD2 CE2 doub Y N 355 TYR CD2 HD2 sing N N 356 TYR CE1 CZ doub Y N 357 TYR CE1 HE1 sing N N 358 TYR CE2 CZ sing Y N 359 TYR CE2 HE2 sing N N 360 TYR CZ OH sing N N 361 TYR OH HH sing N N 362 TYR OXT HXT sing N N 363 VAL N CA sing N N 364 VAL N H sing N N 365 VAL N H2 sing N N 366 VAL CA C sing N N 367 VAL CA CB sing N N 368 VAL CA HA sing N N 369 VAL C O doub N N 370 VAL C OXT sing N N 371 VAL CB CG1 sing N N 372 VAL CB CG2 sing N N 373 VAL CB HB sing N N 374 VAL CG1 HG11 sing N N 375 VAL CG1 HG12 sing N N 376 VAL CG1 HG13 sing N N 377 VAL CG2 HG21 sing N N 378 VAL CG2 HG22 sing N N 379 VAL CG2 HG23 sing N N 380 VAL OXT HXT sing N N 381 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1NXJ _pdbx_initial_refinement_model.details ? #