HEADER RNA 30-MAR-07 2PCV TITLE SOLUTION STRUCTURE OF AN RRNA SUBSTRATE BOUND TO THE PSEUDOURIDYLATION TITLE 2 POCKET OF A BOX H/ACA SNORNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: U65 BOX H/ACA SNORNA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA HAIRPIN CONTAINING THE PSEUDOURIDYLATION POCKET; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHESIZED BY IN VITRO TRANSCRIPTION USING T7 RNA SOURCE 4 POLYMERASE FROM LINEARIZED PLASMID DNA. THIS SEQUENCE NATURALLY SOURCE 5 OCCURS IN HUMANS. KEYWDS BOX H/ACA SNORNA, PSEUDOURIDYLATION, RRNA, RNA EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR H.JIN,J.P.LORIA,P.B.MOORE REVDAT 3 16-MAR-22 2PCV 1 REMARK REVDAT 2 24-FEB-09 2PCV 1 VERSN REVDAT 1 08-MAY-07 2PCV 0 JRNL AUTH H.JIN,J.P.LORIA,P.B.MOORE JRNL TITL SOLUTION STRUCTURE OF AN RRNA SUBSTRATE BOUND TO THE JRNL TITL 2 PSEUDOURIDYLATION POCKET OF A BOX H/ACA SNORNA. JRNL REF MOL.CELL V. 26 205 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17466623 JRNL DOI 10.1016/J.MOLCEL.2007.03.014 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN (CNS 1.1) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DESCRIBED IN THE PRIMARY CITATION REMARK 4 REMARK 4 2PCV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042235. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 298 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 5 MM CACODYLATE, 50 MM NACL AND REMARK 210 0.1 MM EDTA.; 5 MM CACODYLATE, REMARK 210 50 MM NACL AND 0.1 MM EDTA REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : UNLABELED; UNIFORM LABELING WITH REMARK 210 15N: U-15N UNIFORM LABELING WITH REMARK 210 13C: U-13C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY; 15N-HSQC; REMARK 210 13C-HSQC; 15N-NOESYHSQC; 13C- REMARK 210 NOESYHSQC; HCCH/COSY/RELAY/TOCSY; REMARK 210 31P-HETCOR REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS,SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SEE PAPER FOR MORE DETAILS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO2' A A 10 O4' C A 11 1.53 REMARK 500 HO2' C A 14 O4' A A 15 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 A A 3 N1 - C6 - N6 ANGL. DEV. = -4.6 DEGREES REMARK 500 1 C A 4 N3 - C4 - N4 ANGL. DEV. = -4.5 DEGREES REMARK 500 1 G A 13 N1 - C2 - N2 ANGL. DEV. = -6.4 DEGREES REMARK 500 1 G A 13 N3 - C2 - N2 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 A A 23 N1 - C6 - N6 ANGL. DEV. = -4.3 DEGREES REMARK 500 1 G A 32 N1 - C2 - N2 ANGL. DEV. = -5.4 DEGREES REMARK 500 1 G A 32 N3 - C2 - N2 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 C A 34 N3 - C4 - N4 ANGL. DEV. = -5.4 DEGREES REMARK 500 2 A A 3 N1 - C6 - N6 ANGL. DEV. = -4.5 DEGREES REMARK 500 2 C A 4 N3 - C4 - N4 ANGL. DEV. = -4.5 DEGREES REMARK 500 2 C A 4 C5 - C4 - N4 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 G A 13 N1 - C2 - N2 ANGL. DEV. = -6.0 DEGREES REMARK 500 2 A A 15 N1 - C6 - N6 ANGL. DEV. = -4.3 DEGREES REMARK 500 2 G A 31 N1 - C2 - N2 ANGL. DEV. = -5.4 DEGREES REMARK 500 2 G A 32 N1 - C2 - N2 ANGL. DEV. = -6.0 DEGREES REMARK 500 2 G A 32 N3 - C2 - N2 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 C A 34 N3 - C4 - N4 ANGL. DEV. = -5.3 DEGREES REMARK 500 3 A A 3 N1 - C6 - N6 ANGL. DEV. = -4.3 DEGREES REMARK 500 3 C A 4 N3 - C4 - N4 ANGL. DEV. = -4.3 DEGREES REMARK 500 3 G A 13 N1 - C2 - N2 ANGL. DEV. = -6.7 DEGREES REMARK 500 3 G A 13 N3 - C2 - N2 ANGL. DEV. = 5.9 DEGREES REMARK 500 3 C A 14 N3 - C4 - N4 ANGL. DEV. = -4.6 DEGREES REMARK 500 3 C A 22 N1 - C2 - O2 ANGL. DEV. = 3.6 DEGREES REMARK 500 3 G A 32 N1 - C2 - N2 ANGL. DEV. = -6.2 DEGREES REMARK 500 3 G A 32 N3 - C2 - N2 ANGL. DEV. = 5.1 DEGREES REMARK 500 3 C A 34 N3 - C4 - N4 ANGL. DEV. = -4.9 DEGREES REMARK 500 4 A A 3 N1 - C6 - N6 ANGL. DEV. = -4.2 DEGREES REMARK 500 4 C A 4 N3 - C4 - N4 ANGL. DEV. = -4.3 DEGREES REMARK 500 4 G A 13 N1 - C2 - N2 ANGL. DEV. = -5.9 DEGREES REMARK 500 4 G A 13 N3 - C2 - N2 ANGL. DEV. = 4.8 DEGREES REMARK 500 4 G A 21 N1 - C2 - N2 ANGL. DEV. = -6.1 DEGREES REMARK 500 4 C A 22 N3 - C4 - N4 ANGL. DEV. = -4.8 DEGREES REMARK 500 4 C A 22 C5 - C4 - N4 ANGL. DEV. = 4.6 DEGREES REMARK 500 4 G A 31 N1 - C2 - N2 ANGL. DEV. = -5.9 DEGREES REMARK 500 4 G A 32 N1 - C2 - N2 ANGL. DEV. = -6.1 DEGREES REMARK 500 4 G A 32 N3 - C2 - N2 ANGL. DEV. = 4.8 DEGREES REMARK 500 4 C A 34 N3 - C4 - N4 ANGL. DEV. = -4.7 DEGREES REMARK 500 5 A A 3 N1 - C6 - N6 ANGL. DEV. = -4.3 DEGREES REMARK 500 5 C A 4 N3 - C4 - N4 ANGL. DEV. = -4.6 DEGREES REMARK 500 5 C A 4 C5 - C4 - N4 ANGL. DEV. = 4.4 DEGREES REMARK 500 5 G A 13 N1 - C2 - N2 ANGL. DEV. = -6.3 DEGREES REMARK 500 5 G A 13 N3 - C2 - N2 ANGL. DEV. = 5.3 DEGREES REMARK 500 5 G A 18 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 5 G A 21 N1 - C2 - N2 ANGL. DEV. = -6.3 DEGREES REMARK 500 5 C A 22 N3 - C4 - N4 ANGL. DEV. = -4.5 DEGREES REMARK 500 5 G A 31 N1 - C2 - N2 ANGL. DEV. = -5.8 DEGREES REMARK 500 5 G A 31 N3 - C2 - N2 ANGL. DEV. = 4.2 DEGREES REMARK 500 5 G A 32 N1 - C2 - N2 ANGL. DEV. = -5.6 DEGREES REMARK 500 5 G A 32 N3 - C2 - N2 ANGL. DEV. = 4.5 DEGREES REMARK 500 5 C A 34 N3 - C4 - N4 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 116 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PCW RELATED DB: PDB DBREF 2PCV A 1 35 PDB 2PCV 2PCV 1 35 SEQRES 1 A 35 G G A C C C G C C A C U G SEQRES 2 A 35 C A G A G A U G C A A U C SEQRES 3 A 35 C A G U G G U C C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1