HEADER OXIDOREDUCTASE 02-APR-07 2PEB TITLE CRYSTAL STRUCTURE OF A PUTATIVE DIOXYGENASE (NPUN_F1925) FROM NOSTOC TITLE 2 PUNCTIFORME PCC 73102 AT 1.46 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC PUNCTIFORME; SOURCE 3 ORGANISM_TAXID: 63737; SOURCE 4 STRAIN: PCC 73102; SOURCE 5 GENE: ZP_00109509.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-OCT-17 2PEB 1 REMARK REVDAT 5 18-OCT-17 2PEB 1 REMARK REVDAT 4 13-JUL-11 2PEB 1 VERSN REVDAT 3 23-MAR-11 2PEB 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2PEB 1 VERSN REVDAT 1 17-APR-07 2PEB 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE DIOXYGENASE (ZP_00109509.1) JRNL TITL 2 FROM NOSTOC PUNCTIFORME PCC 73102 AT 1.46 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 37018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1866 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2175 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1814 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : -1.43000 REMARK 3 B33 (A**2) : 1.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.756 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1966 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1354 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2670 ; 1.493 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3273 ; 0.941 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 7.173 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;35.207 ;23.053 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 306 ;12.943 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;13.606 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2195 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 430 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 434 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1541 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 942 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1054 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 170 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.308 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.322 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 65 ; 0.253 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.100 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1187 ; 1.937 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 474 ; 0.511 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1883 ; 2.732 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 872 ; 4.582 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 777 ; 6.677 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1140 2.4680 30.8810 REMARK 3 T TENSOR REMARK 3 T11: -0.0817 T22: -0.0540 REMARK 3 T33: -0.1181 T12: -0.0033 REMARK 3 T13: 0.0093 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.8587 L22: 1.5107 REMARK 3 L33: 1.1599 L12: -0.1405 REMARK 3 L13: 0.1735 L23: -0.1971 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: -0.0399 S13: -0.0820 REMARK 3 S21: 0.0510 S22: 0.0173 S23: -0.0475 REMARK 3 S31: 0.1420 S32: 0.0367 S33: -0.0130 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 116 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8790 23.2490 30.9980 REMARK 3 T TENSOR REMARK 3 T11: -0.0610 T22: -0.0489 REMARK 3 T33: -0.1061 T12: 0.0008 REMARK 3 T13: 0.0027 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.8703 L22: 1.5648 REMARK 3 L33: 0.9992 L12: 0.1642 REMARK 3 L13: -0.2126 L23: -0.0184 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: -0.0761 S13: 0.1211 REMARK 3 S21: 0.0763 S22: 0.0145 S23: 0.0448 REMARK 3 S31: -0.1717 S32: -0.0263 S33: -0.0046 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. X-RAY FLUORESECNCE MEASUREMENTS SUPPORT THE ASSIGNMENT OF REMARK 3 ZN ATOMS TO THE STRUCTURE. REMARK 3 4. PEG 3350 (PG4) AND EDO MOLECULES FROM THE CRYSTALLIZATION/CRYO REMARK 3 SOLUTIONS ARE MODELED. REMARK 3 5. AN UNKNOWN LIGAND (UNL) IS MODELED COORDINATING WITH ZN ION. REMARK 3 6. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 7. RESIDUES 1 AND 117-121 ARE DISORDERED AND ARE NOT MODELED. REMARK 4 REMARK 4 2PEB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042282. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97944, 0.97913 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37036 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 35.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M AMMONIUM CITRATE REMARK 280 (DIBASIC), 20.0% PEG 3350, NO BUFFER PH 5.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.52100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAINS. SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 117 REMARK 465 THR A 118 REMARK 465 SER A 119 REMARK 465 SER A 120 REMARK 465 ASN A 121 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 SER B 117 REMARK 465 THR B 118 REMARK 465 SER B 119 REMARK 465 SER B 120 REMARK 465 ASN B 121 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 42 CD NE CZ NH1 NH2 REMARK 470 LYS A 46 CD CE NZ REMARK 470 GLN A 114 CD OE1 NE2 REMARK 470 GLN B 39 CG CD OE1 NE2 REMARK 470 GLN B 114 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 3 CB GLU B 3 CG 0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 202 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 12 ND1 REMARK 620 2 HIS A 14 NE2 121.0 REMARK 620 3 UNL A 201 O1 86.6 104.6 REMARK 620 4 UNL A 201 O7 151.0 72.5 64.5 REMARK 620 5 HIS A 84 NE2 104.4 111.1 128.4 92.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 14 NE2 REMARK 620 2 HIS B 84 NE2 93.1 REMARK 620 3 HIS B 12 ND1 120.5 107.4 REMARK 620 4 UNL B 201 O6 122.9 134.8 78.8 REMARK 620 5 UNL B 201 O5 132.5 105.4 95.4 30.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 374007 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. REMARK 999 2. THE CONSTRUCT HAS FOLLOWING MUTATIONS: E103A, Q104A, REMARK 999 AND D106A. REMARK 999 3. THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT REMARK 999 THE UNIPROT DATABASE AT THE TIME OF DEPOSITION. REMARK 999 4. THE SEQUENCE INFORMATION IS AVAILABLE AT GENBANK WITH REMARK 999 ACCESSION CODE ZP_00109509.1 AND FROM THE UNIPROT ARCHIVE REMARK 999 WITH ACCESSION CODE UPI000038CEC6. DBREF 2PEB A 0 121 PDB 2PEB 2PEB 0 121 DBREF 2PEB B 0 121 PDB 2PEB 2PEB 0 121 SEQRES 1 A 122 GLY MSE LYS GLU ASP THR ILE GLU ILE ALA GLY PHE HIS SEQRES 2 A 122 ALA HIS VAL TYR PHE ASP ALA ALA SER ARG ASP VAL ALA SEQRES 3 A 122 ALA ARG VAL ARG GLU GLY LEU GLY ALA ARG PHE GLU VAL SEQRES 4 A 122 GLN LEU GLY ARG TRP PHE ASP LYS PRO ILE GLY PRO HIS SEQRES 5 A 122 PRO LYS GLY MSE TYR GLN VAL ALA PHE LEU PRO ASN GLN SEQRES 6 A 122 PHE ASP LYS VAL VAL PRO TRP LEU MSE LEU ASN ARG GLU SEQRES 7 A 122 GLY LEU ASP ILE LEU VAL HIS PRO GLU THR GLY ASP ALA SEQRES 8 A 122 VAL SER ASP HIS ALA VAL TYR SER LEU TRP LEU GLY ALA SEQRES 9 A 122 ALA LEU ALA LEU ASN ILE GLU PHE LEU ARG GLN LEU SER SEQRES 10 A 122 SER THR SER SER ASN SEQRES 1 B 122 GLY MSE LYS GLU ASP THR ILE GLU ILE ALA GLY PHE HIS SEQRES 2 B 122 ALA HIS VAL TYR PHE ASP ALA ALA SER ARG ASP VAL ALA SEQRES 3 B 122 ALA ARG VAL ARG GLU GLY LEU GLY ALA ARG PHE GLU VAL SEQRES 4 B 122 GLN LEU GLY ARG TRP PHE ASP LYS PRO ILE GLY PRO HIS SEQRES 5 B 122 PRO LYS GLY MSE TYR GLN VAL ALA PHE LEU PRO ASN GLN SEQRES 6 B 122 PHE ASP LYS VAL VAL PRO TRP LEU MSE LEU ASN ARG GLU SEQRES 7 B 122 GLY LEU ASP ILE LEU VAL HIS PRO GLU THR GLY ASP ALA SEQRES 8 B 122 VAL SER ASP HIS ALA VAL TYR SER LEU TRP LEU GLY ALA SEQRES 9 B 122 ALA LEU ALA LEU ASN ILE GLU PHE LEU ARG GLN LEU SER SEQRES 10 B 122 SER THR SER SER ASN MODRES 2PEB MSE A 55 MET SELENOMETHIONINE MODRES 2PEB MSE A 73 MET SELENOMETHIONINE MODRES 2PEB MSE B 55 MET SELENOMETHIONINE MODRES 2PEB MSE B 73 MET SELENOMETHIONINE HET MSE A 55 8 HET MSE A 73 8 HET MSE B 55 8 HET MSE B 73 8 HET ZN A 200 1 HET UNL A 201 7 HET PG4 A 202 7 HET EDO A 203 4 HET ZN B 200 1 HET UNL B 201 6 HET EDO B 202 4 HET EDO B 203 4 HET EDO B 204 4 HET EDO B 205 4 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM UNL UNKNOWN LIGAND HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 PG4 C8 H18 O5 FORMUL 6 EDO 5(C2 H6 O2) FORMUL 13 HOH *227(H2 O) HELIX 1 1 ASP A 4 ILE A 8 5 5 HELIX 2 2 ASP A 18 ALA A 20 5 3 HELIX 3 3 SER A 21 PHE A 36 1 16 HELIX 4 4 LEU A 61 ASN A 63 5 3 HELIX 5 5 GLN A 64 ARG A 76 1 13 HELIX 6 6 ASP A 89 VAL A 96 1 8 HELIX 7 7 ASN A 108 LEU A 115 1 8 HELIX 8 8 ASP B 4 ILE B 8 5 5 HELIX 9 9 SER B 21 PHE B 36 1 16 HELIX 10 10 LEU B 61 ASN B 63 5 3 HELIX 11 11 GLN B 64 ARG B 76 1 13 HELIX 12 12 ASP B 89 VAL B 96 1 8 HELIX 13 13 ASN B 108 SER B 116 1 9 SHEET 1 A 5 GLN A 39 PHE A 44 0 SHEET 2 A 5 GLY A 54 PHE A 60 -1 O MSE A 55 N PHE A 44 SHEET 3 A 5 GLY A 10 PHE A 17 -1 N ALA A 13 O VAL A 58 SHEET 4 A 5 ILE A 81 GLU A 86 -1 O LEU A 82 N HIS A 14 SHEET 5 A 5 LEU A 99 LEU A 101 -1 O LEU A 99 N VAL A 83 SHEET 1 B 5 GLN B 39 LEU B 40 0 SHEET 2 B 5 MSE B 55 PHE B 60 -1 O ALA B 59 N GLN B 39 SHEET 3 B 5 PHE B 11 TYR B 16 -1 N PHE B 11 O PHE B 60 SHEET 4 B 5 ILE B 81 PRO B 85 -1 O LEU B 82 N HIS B 14 SHEET 5 B 5 LEU B 99 LEU B 101 -1 O LEU B 101 N ILE B 81 LINK C GLY A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N TYR A 56 1555 1555 1.32 LINK C LEU A 72 N MSE A 73 1555 1555 1.33 LINK C MSE A 73 N LEU A 74 1555 1555 1.36 LINK ZN ZN A 200 ND1 HIS A 12 1555 1555 2.08 LINK ZN ZN A 200 NE2 HIS A 14 1555 1555 1.89 LINK ZN ZN A 200 O1 UNL A 201 1555 1555 1.72 LINK ZN ZN A 200 O7 UNL A 201 1555 1555 2.30 LINK ZN ZN A 200 NE2 HIS A 84 1555 1555 2.19 LINK C GLY B 54 N MSE B 55 1555 1555 1.33 LINK C MSE B 55 N TYR B 56 1555 1555 1.32 LINK C LEU B 72 N MSE B 73 1555 1555 1.33 LINK C MSE B 73 N LEU B 74 1555 1555 1.34 LINK ZN ZN B 200 NE2 HIS B 14 1555 1555 2.00 LINK ZN ZN B 200 NE2 HIS B 84 1555 1555 2.34 LINK ZN ZN B 200 ND1 HIS B 12 1555 1555 2.42 LINK ZN ZN B 200 O6 UNL B 201 1555 1555 1.51 LINK ZN ZN B 200 O5 UNL B 201 1555 1555 2.52 SITE 1 AC1 4 HIS A 12 HIS A 14 HIS A 84 UNL A 201 SITE 1 AC2 5 HIS B 12 HIS B 14 GLN B 57 HIS B 84 SITE 2 AC2 5 UNL B 201 SITE 1 AC3 8 HIS A 12 HIS A 14 PRO A 50 HIS A 51 SITE 2 AC3 8 GLN A 57 HIS A 84 HIS A 94 ZN A 200 SITE 1 AC4 9 HIS B 12 HIS B 14 HIS B 51 GLN B 57 SITE 2 AC4 9 HIS B 84 HIS B 94 ZN B 200 HOH B 313 SITE 3 AC4 9 HOH B 314 SITE 1 AC5 9 ASP A 18 SER A 21 LYS A 53 GLU A 77 SITE 2 AC5 9 GLY A 78 LEU A 79 HOH A 204 HOH A 241 SITE 3 AC5 9 HOH A 304 SITE 1 AC6 4 SER A 98 ARG B 76 LEU B 101 GLY B 102 SITE 1 AC7 6 ARG A 76 LEU A 101 GLY A 102 SER B 98 SITE 2 AC7 6 TRP B 100 HOH B 320 SITE 1 AC8 2 HOH B 214 HOH B 250 SITE 1 AC9 5 ARG B 42 TRP B 43 PHE B 44 ASP B 45 SITE 2 AC9 5 LYS B 46 SITE 1 BC1 3 ASP B 66 HOH B 261 HOH B 266 CRYST1 44.562 57.042 46.676 90.00 104.81 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022440 0.000000 0.005930 0.00000 SCALE2 0.000000 0.017530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022160 0.00000