HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-APR-07 2PFS TITLE CRYSTAL STRUCTURE OF UNIVERSAL STRESS PROTEIN FROM NITROSOMONAS TITLE 2 EUROPAEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNIVERSAL STRESS PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: USP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA ATCC 19718; SOURCE 3 ORGANISM_TAXID: 228410; SOURCE 4 STRAIN: IFO 14298; SOURCE 5 GENE: NE1028; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV-L KEYWDS STRESS PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.CHRUSZCZ,E.EVDOKIMOVA,M.CYMBOROWSKI,O.KAGAN,A.SAVCHENKO,A.EDWARDS, AUTHOR 2 A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 7 13-APR-22 2PFS 1 AUTHOR JRNL REMARK SEQADV REVDAT 7 2 1 LINK REVDAT 6 26-JUN-13 2PFS 1 JRNL REVDAT 5 17-APR-13 2PFS 1 JRNL REVDAT 4 14-SEP-11 2PFS 1 REMARK REVDAT 3 13-JUL-11 2PFS 1 VERSN REVDAT 2 24-FEB-09 2PFS 1 VERSN REVDAT 1 08-MAY-07 2PFS 0 JRNL AUTH K.L.TKACZUK,I.A.SHUMILIN,M.CHRUSZCZ,E.EVDOKIMOVA, JRNL AUTH 2 A.SAVCHENKO,W.MINOR JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHT INTO THE UNIVERSAL STRESS JRNL TITL 2 PROTEIN FAMILY. JRNL REF EVOL APPL V. 6 434 2013 JRNL REFN ESSN 1752-4571 JRNL PMID 23745136 JRNL DOI 10.1111/EVA.12057 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 6538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 329 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 407 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.80000 REMARK 3 B22 (A**2) : -1.80000 REMARK 3 B33 (A**2) : 2.70000 REMARK 3 B12 (A**2) : -0.90000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.277 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.228 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.231 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 957 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1308 ; 1.563 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 124 ; 8.463 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 38 ;38.880 ;25.263 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 154 ;13.601 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;13.282 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 167 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 697 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 397 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 669 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 51 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.254 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 647 ; 1.182 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1006 ; 1.740 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 352 ; 2.736 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 302 ; 4.252 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8857 28.9971 17.1948 REMARK 3 T TENSOR REMARK 3 T11: -0.1725 T22: -0.1242 REMARK 3 T33: -0.0816 T12: -0.0089 REMARK 3 T13: 0.0133 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 11.9458 L22: 3.9491 REMARK 3 L33: 1.2621 L12: -4.8695 REMARK 3 L13: 3.5244 L23: -0.7759 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: -0.8252 S13: -1.0076 REMARK 3 S21: -0.1127 S22: 0.1368 S23: 0.3162 REMARK 3 S31: 0.1841 S32: -0.1601 S33: -0.1563 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 35 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8603 34.7075 18.2779 REMARK 3 T TENSOR REMARK 3 T11: -0.1645 T22: -0.1822 REMARK 3 T33: -0.1777 T12: 0.0442 REMARK 3 T13: 0.0230 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 10.0510 L22: 5.7113 REMARK 3 L33: 2.5845 L12: -3.2718 REMARK 3 L13: 0.2266 L23: -1.4397 REMARK 3 S TENSOR REMARK 3 S11: -0.1434 S12: -0.2108 S13: 0.3651 REMARK 3 S21: -0.0489 S22: 0.1067 S23: -0.1207 REMARK 3 S31: 0.0229 S32: 0.0051 S33: 0.0367 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6798 23.1851 5.0710 REMARK 3 T TENSOR REMARK 3 T11: 0.1747 T22: 0.3257 REMARK 3 T33: 0.3420 T12: -0.0976 REMARK 3 T13: -0.2199 T23: -0.1174 REMARK 3 L TENSOR REMARK 3 L11: 10.0661 L22: 0.9326 REMARK 3 L33: 5.6770 L12: 3.0639 REMARK 3 L13: 7.5595 L23: 2.3009 REMARK 3 S TENSOR REMARK 3 S11: 1.1132 S12: -0.7862 S13: -0.5534 REMARK 3 S21: 0.2488 S22: -0.1528 S23: -0.1619 REMARK 3 S31: 0.7903 S32: -0.8214 S33: -0.9604 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3176 25.9613 10.4891 REMARK 3 T TENSOR REMARK 3 T11: 0.0376 T22: -0.0799 REMARK 3 T33: 0.1385 T12: -0.0013 REMARK 3 T13: -0.0362 T23: -0.0870 REMARK 3 L TENSOR REMARK 3 L11: 6.8401 L22: 0.1887 REMARK 3 L33: 2.7848 L12: -1.1359 REMARK 3 L13: 3.0985 L23: -0.5196 REMARK 3 S TENSOR REMARK 3 S11: 0.3721 S12: 0.2271 S13: -1.3816 REMARK 3 S21: -0.4396 S22: 0.0875 S23: 0.2890 REMARK 3 S31: 0.5125 S32: -0.0443 S33: -0.4596 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6882 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 58.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48600 REMARK 200 R SYM FOR SHELL (I) : 0.48600 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, CCP4, MLPHARE, DM, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CHLORIDE, 0.1M HEPES PH REMARK 280 7.5, 25% PEG3350, 2% ISOPROPANOL, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.98700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 ASN A 43 REMARK 465 ILE A 44 REMARK 465 PRO A 45 REMARK 465 MSE A 46 REMARK 465 PRO A 47 REMARK 465 ASP A 48 REMARK 465 THR A 49 REMARK 465 PRO A 50 REMARK 465 TYR A 51 REMARK 465 GLY A 52 REMARK 465 GLY A 117 REMARK 465 ARG A 118 REMARK 465 HIS A 119 REMARK 465 GLY A 120 REMARK 465 LEU A 121 REMARK 465 ALA A 122 REMARK 465 LEU A 123 REMARK 465 LEU A 124 REMARK 465 LEU A 125 REMARK 465 GLY A 126 REMARK 465 ARG A 146 REMARK 465 ASP A 147 REMARK 465 ASP A 148 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG SE CE REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 SER A 127 OG REMARK 470 ASN A 130 CG OD1 ND2 REMARK 470 SER A 131 OG REMARK 470 HIS A 134 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 135 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 115 HIS A 116 56.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 150 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6354 RELATED DB: TARGETDB DBREF 2PFS A 1 148 UNP Q82VN8 Q82VN8_NITEU 1 148 SEQADV 2PFS GLY A -1 UNP Q82VN8 CLONING ARTIFACT SEQADV 2PFS HIS A 0 UNP Q82VN8 CLONING ARTIFACT SEQADV 2PFS MSE A 1 UNP Q82VN8 MET 1 MODIFIED RESIDUE SEQADV 2PFS MSE A 46 UNP Q82VN8 MET 46 MODIFIED RESIDUE SEQADV 2PFS MSE A 66 UNP Q82VN8 MET 66 MODIFIED RESIDUE SEQRES 1 A 150 GLY HIS MSE SER VAL TYR HIS HIS ILE LEU LEU ALA VAL SEQRES 2 A 150 ASP PHE SER SER GLU ASP SER GLN VAL VAL GLN LYS VAL SEQRES 3 A 150 ARG ASN LEU ALA SER GLN ILE GLY ALA ARG LEU SER LEU SEQRES 4 A 150 ILE HIS VAL LEU ASP ASN ILE PRO MSE PRO ASP THR PRO SEQRES 5 A 150 TYR GLY THR ALA ILE PRO LEU ASP THR GLU THR THR TYR SEQRES 6 A 150 ASP ALA MSE LEU ASP VAL GLU LYS GLN LYS LEU SER GLN SEQRES 7 A 150 ILE GLY ASN THR LEU GLY ILE ASP PRO ALA HIS ARG TRP SEQRES 8 A 150 LEU VAL TRP GLY GLU PRO ARG GLU GLU ILE ILE ARG ILE SEQRES 9 A 150 ALA GLU GLN GLU ASN VAL ASP LEU ILE VAL VAL GLY SER SEQRES 10 A 150 HIS GLY ARG HIS GLY LEU ALA LEU LEU LEU GLY SER THR SEQRES 11 A 150 ALA ASN SER VAL LEU HIS TYR ALA LYS CYS ASP VAL LEU SEQRES 12 A 150 ALA VAL ARG LEU ARG ASP ASP MODRES 2PFS MSE A 1 MET SELENOMETHIONINE MODRES 2PFS MSE A 66 MET SELENOMETHIONINE HET MSE A 1 5 HET MSE A 66 8 HET CL A 149 1 HET CL A 150 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 CL 2(CL 1-) FORMUL 4 HOH *40(H2 O) HELIX 1 1 GLU A 16 GLY A 32 1 17 HELIX 2 2 THR A 62 GLY A 82 1 21 HELIX 3 3 ASP A 84 ALA A 86 5 3 HELIX 4 4 GLU A 94 GLU A 106 1 13 HELIX 5 5 SER A 127 ALA A 136 1 10 SHEET 1 A 5 ARG A 88 TRP A 92 0 SHEET 2 A 5 ARG A 34 LEU A 41 1 N LEU A 41 O VAL A 91 SHEET 3 A 5 HIS A 6 ALA A 10 1 N ILE A 7 O ARG A 34 SHEET 4 A 5 LEU A 110 SER A 115 1 O LEU A 110 N LEU A 8 SHEET 5 A 5 ASP A 139 ARG A 144 1 O VAL A 143 N VAL A 113 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C ALA A 65 N MSE A 66 1555 1555 1.35 LINK C MSE A 66 N LEU A 67 1555 1555 1.33 CISPEP 1 LEU A 41 ASP A 42 0 22.48 SITE 1 AC1 2 VAL A 11 VAL A 40 SITE 1 AC2 1 THR A 62 CRYST1 76.000 76.000 42.987 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013158 0.007597 0.000000 0.00000 SCALE2 0.000000 0.015193 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023263 0.00000 HETATM 1 N MSE A 1 27.579 33.127 14.792 1.00 69.60 N HETATM 2 CA MSE A 1 26.463 32.816 13.837 1.00 68.94 C HETATM 3 C MSE A 1 25.263 32.176 14.560 1.00 67.92 C HETATM 4 O MSE A 1 25.401 31.638 15.673 1.00 68.58 O HETATM 5 CB MSE A 1 26.956 31.927 12.678 1.00 69.03 C