HEADER TRANSPORT PROTEIN 05-APR-07 2PFU TITLE NMR STRUCTURE DETERMINATION OF THE PERIPLASMIC DOMAIN OF EXBD FROM TITLE 2 E.COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOPOLYMER TRANSPORT EXBD PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PERIPLASMIC DOMAIN (RESIDUES 44-141) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12 KEYWDS EXBD, TONB SYSTEM, PROTON MOTIVE FORCE, PERIPLASMIC DOMAIN, TRANSPORT KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR A.GARCIA-HERRERO,S.R.PEACOCK,P.S.HOWARD,H.J.VOGEL REVDAT 5 02-SEP-20 2PFU 1 TITLE REMARK SEQADV REVDAT 4 13-JUL-11 2PFU 1 VERSN REVDAT 3 24-FEB-09 2PFU 1 VERSN REVDAT 2 20-NOV-07 2PFU 1 JRNL REVDAT 1 23-OCT-07 2PFU 0 JRNL AUTH A.GARCIA-HERRERO,R.S.PEACOCK,S.P.HOWARD,H.J.VOGEL JRNL TITL THE SOLUTION STRUCTURE OF THE PERIPLASMIC DOMAIN OF THE TONB JRNL TITL 2 SYSTEM EXBD PROTEIN REVEALS AN UNEXPECTED STRUCTURAL JRNL TITL 3 HOMOLOGY WITH SIDEROPHORE-BINDING PROTEINS. JRNL REF MOL.MICROBIOL. V. 66 872 2007 JRNL REFN ISSN 0950-382X JRNL PMID 17927700 JRNL DOI 10.1111/J.1365-2958.2007.05957.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUNTERT, P. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PFU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042330. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.2MM PER-EXBD U-15N, 13C, 100% REMARK 210 D2O, PH 3; 0.2MM PER-EXBD U-15N, REMARK 210 90% H2O/10% H2O, PH 3; 0.2MM PER- REMARK 210 EXBD, 100% D2O, PH 3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 51 148.28 -171.95 REMARK 500 1 GLN A 57 70.09 -155.70 REMARK 500 1 ALA A 70 -167.70 51.54 REMARK 500 1 ASN A 72 89.16 179.84 REMARK 500 1 THR A 101 97.91 -64.57 REMARK 500 1 TYR A 127 90.76 51.21 REMARK 500 1 GLU A 135 103.89 -169.32 REMARK 500 2 VAL A 45 73.69 59.69 REMARK 500 2 LYS A 46 167.68 62.12 REMARK 500 2 VAL A 47 91.10 56.42 REMARK 500 2 PRO A 50 -171.53 -69.82 REMARK 500 2 ALA A 51 41.65 -173.08 REMARK 500 2 SER A 54 131.49 -179.35 REMARK 500 2 THR A 55 69.75 -151.10 REMARK 500 2 PRO A 56 -172.78 -69.73 REMARK 500 2 PRO A 60 -178.12 -69.73 REMARK 500 2 ALA A 70 -167.21 51.60 REMARK 500 2 ASN A 72 89.56 179.72 REMARK 500 2 ASN A 78 46.70 -154.54 REMARK 500 2 ASP A 79 84.18 -175.14 REMARK 500 2 THR A 109 32.09 -95.26 REMARK 500 2 TYR A 127 89.04 51.41 REMARK 500 2 GLU A 136 76.41 -174.01 REMARK 500 2 ALA A 138 127.87 -178.26 REMARK 500 2 ALA A 140 126.22 -171.81 REMARK 500 3 ASP A 44 91.97 -163.51 REMARK 500 3 LYS A 46 59.59 -141.48 REMARK 500 3 LEU A 49 69.35 -165.06 REMARK 500 3 PRO A 50 -174.01 -69.80 REMARK 500 3 ARG A 59 73.68 -113.30 REMARK 500 3 ALA A 70 -168.40 51.76 REMARK 500 3 ASN A 72 91.31 179.94 REMARK 500 3 ASP A 79 75.45 -157.41 REMARK 500 3 THR A 109 32.10 -95.31 REMARK 500 3 TYR A 127 88.59 51.14 REMARK 500 3 GLU A 135 55.62 -110.45 REMARK 500 3 GLU A 136 65.72 -150.58 REMARK 500 3 LYS A 139 135.07 -173.59 REMARK 500 4 LEU A 49 73.22 53.36 REMARK 500 4 ALA A 51 87.44 62.13 REMARK 500 4 SER A 52 60.12 -104.16 REMARK 500 4 ALA A 70 86.03 53.78 REMARK 500 4 ASP A 71 -75.98 69.20 REMARK 500 4 ASN A 72 55.06 -171.26 REMARK 500 4 ASN A 78 43.25 -154.79 REMARK 500 4 ASP A 79 84.75 -168.72 REMARK 500 4 TYR A 127 88.33 51.11 REMARK 500 4 GLU A 135 35.37 -95.71 REMARK 500 4 GLU A 136 81.84 52.56 REMARK 500 4 LYS A 139 145.57 -175.37 REMARK 500 REMARK 500 THIS ENTRY HAS 213 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2PFU A 44 141 UNP P0ABV2 EXBD_ECOLI 44 141 SEQADV 2PFU MET A 43 UNP P0ABV2 INITIATING METHIONINE SEQRES 1 A 99 MET ASP VAL LYS VAL ASN LEU PRO ALA SER THR SER THR SEQRES 2 A 99 PRO GLN PRO ARG PRO GLU LYS PRO VAL TYR LEU SER VAL SEQRES 3 A 99 LYS ALA ASP ASN SER MET PHE ILE GLY ASN ASP PRO VAL SEQRES 4 A 99 THR ASP GLU THR MET ILE THR ALA LEU ASN ALA LEU THR SEQRES 5 A 99 GLU GLY LYS LYS ASP THR THR ILE PHE PHE ARG ALA ASP SEQRES 6 A 99 LYS THR VAL ASP TYR GLU THR LEU MET LYS VAL MET ASP SEQRES 7 A 99 THR LEU HIS GLN ALA GLY TYR LEU LYS ILE GLY LEU VAL SEQRES 8 A 99 GLY GLU GLU THR ALA LYS ALA LYS HELIX 1 1 THR A 85 THR A 94 1 10 HELIX 2 2 ASP A 111 ALA A 125 1 15 SHEET 1 A 5 ASP A 79 VAL A 81 0 SHEET 2 A 5 SER A 73 ILE A 76 -1 N ILE A 76 O ASP A 79 SHEET 3 A 5 TYR A 65 LYS A 69 -1 N SER A 67 O PHE A 75 SHEET 4 A 5 ILE A 102 ALA A 106 1 O PHE A 103 N LEU A 66 SHEET 5 A 5 ILE A 130 GLY A 131 1 O GLY A 131 N PHE A 104 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1