data_2PFW # _entry.id 2PFW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PFW pdb_00002pfw 10.2210/pdb2pfw/pdb RCSB RCSB042332 ? ? WWPDB D_1000042332 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 371790 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2PFW _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-04-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of Cupin 2 conserved barrel domain protein (YP_751781.1) from Shewanella frigidimarina NCIMB 400 at 1.90 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2PFW _cell.length_a 58.500 _cell.length_b 73.140 _cell.length_c 73.130 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PFW _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cupin 2, conserved barrel domain protein' 12882.890 2 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 3 water nat water 18.015 111 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)QQSEHFSFGEQTEIEDIGGGLKRQ(MSE)LGFNHEL(MSE)AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVN VDGVIKVLTAGDSFFVPPHVDHGAVCPTGGILIDTFSPAREDFVEGLS ; _entity_poly.pdbx_seq_one_letter_code_can ;GMQQSEHFSFGEQTEIEDIGGGLKRQMLGFNHELMAVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDGVIKVLTAGD SFFVPPHVDHGAVCPTGGILIDTFSPAREDFVEGLS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 371790 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 GLN n 1 4 GLN n 1 5 SER n 1 6 GLU n 1 7 HIS n 1 8 PHE n 1 9 SER n 1 10 PHE n 1 11 GLY n 1 12 GLU n 1 13 GLN n 1 14 THR n 1 15 GLU n 1 16 ILE n 1 17 GLU n 1 18 ASP n 1 19 ILE n 1 20 GLY n 1 21 GLY n 1 22 GLY n 1 23 LEU n 1 24 LYS n 1 25 ARG n 1 26 GLN n 1 27 MSE n 1 28 LEU n 1 29 GLY n 1 30 PHE n 1 31 ASN n 1 32 HIS n 1 33 GLU n 1 34 LEU n 1 35 MSE n 1 36 ALA n 1 37 VAL n 1 38 LYS n 1 39 ILE n 1 40 TRP n 1 41 PHE n 1 42 ASP n 1 43 LYS n 1 44 GLY n 1 45 ALA n 1 46 GLU n 1 47 GLY n 1 48 TYR n 1 49 VAL n 1 50 HIS n 1 51 ALA n 1 52 HIS n 1 53 ARG n 1 54 HIS n 1 55 SER n 1 56 GLN n 1 57 VAL n 1 58 SER n 1 59 TYR n 1 60 VAL n 1 61 VAL n 1 62 GLU n 1 63 GLY n 1 64 GLU n 1 65 PHE n 1 66 HIS n 1 67 VAL n 1 68 ASN n 1 69 VAL n 1 70 ASP n 1 71 GLY n 1 72 VAL n 1 73 ILE n 1 74 LYS n 1 75 VAL n 1 76 LEU n 1 77 THR n 1 78 ALA n 1 79 GLY n 1 80 ASP n 1 81 SER n 1 82 PHE n 1 83 PHE n 1 84 VAL n 1 85 PRO n 1 86 PRO n 1 87 HIS n 1 88 VAL n 1 89 ASP n 1 90 HIS n 1 91 GLY n 1 92 ALA n 1 93 VAL n 1 94 CYS n 1 95 PRO n 1 96 THR n 1 97 GLY n 1 98 GLY n 1 99 ILE n 1 100 LEU n 1 101 ILE n 1 102 ASP n 1 103 THR n 1 104 PHE n 1 105 SER n 1 106 PRO n 1 107 ALA n 1 108 ARG n 1 109 GLU n 1 110 ASP n 1 111 PHE n 1 112 VAL n 1 113 GLU n 1 114 GLY n 1 115 LEU n 1 116 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Shewanella _entity_src_gen.pdbx_gene_src_gene 'YP_751781.1, Sfri_3105' _entity_src_gen.gene_src_species 'Shewanella frigidimarina' _entity_src_gen.gene_src_strain 'NCIMB 400' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shewanella frigidimarina' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 318167 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name speedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q07YH2_SHEFN _struct_ref.pdbx_db_accession Q07YH2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MQQSEHFSFGEQTEIEDIGGGLKRQMLGFNHELMAVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDGVIKVLTAGDS FFVPPHVDHGAVCPTGGILIDTFSPAREDFVEGLS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2PFW A 2 ? 116 ? Q07YH2 1 ? 115 ? 1 115 2 1 2PFW B 2 ? 116 ? Q07YH2 1 ? 115 ? 1 115 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2PFW GLY A 1 ? UNP Q07YH2 ? ? 'expression tag' 0 1 1 2PFW MSE A 2 ? UNP Q07YH2 MET 1 'modified residue' 1 2 1 2PFW MSE A 27 ? UNP Q07YH2 MET 26 'modified residue' 26 3 1 2PFW MSE A 35 ? UNP Q07YH2 MET 34 'modified residue' 34 4 2 2PFW GLY B 1 ? UNP Q07YH2 ? ? 'expression tag' 0 5 2 2PFW MSE B 2 ? UNP Q07YH2 MET 1 'modified residue' 1 6 2 2PFW MSE B 27 ? UNP Q07YH2 MET 26 'modified residue' 26 7 2 2PFW MSE B 35 ? UNP Q07YH2 MET 34 'modified residue' 34 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2PFW # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.04 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 59.47 _exptl_crystal.description ;THE STRUCTURE WAS SOLVED IN SPACE GROUP P41212. MAD PHASING STATISTICS AND AUTOMATED MODEL BUILDING LOOKED REASONABLE. AFTER INITIAL REFINEMENT IN P41212, THE R AND FREE-R FACTORS WERE HIGHER THAN EXPECTED. THE STRUCTURE WAS THEN EXPANDED TO SPACEGROUPS P41 AND P212121. TWINNING TESTS IN BOTH SPACE GROUPS YIELDED IMPROVED STATISTICS. HOWEVER, ONLY THE P212121 TWIN REFINEMENT GAVE THE EXPECTED R/FREE-R VALUES. SUBSEQUENTLY, THE MAD PHASING WAS REPEATED IN SPACE GROUP P212121. THE REPORTED STATISTICS REFER TO THE REFINEMENT AGAINST THE TWINNED DATA. ; _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 1.4M Na3Citrate, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2007-01-18 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97895 1.0 3 0.97871 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list '0.91162, 0.97895, 0.97871' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 2PFW _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 29.248 _reflns.number_obs 42979 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_netI_over_sigmaI 12.260 _reflns.percent_possible_obs 89.800 _reflns.B_iso_Wilson_estimate 28.762 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.90 1.97 5859 ? ? 0.331 2.64 ? ? ? ? 4161 83.8 1 1 1.97 2.05 8183 ? ? 0.28 3.56 ? ? ? ? 4386 91.2 2 1 2.05 2.14 7889 ? ? 0.211 4.57 ? ? ? ? 4198 91.2 3 1 2.14 2.25 8019 ? ? 0.183 5.32 ? ? ? ? 4261 91.2 4 1 2.25 2.39 8208 ? ? 0.142 6.75 ? ? ? ? 4342 91.3 5 1 2.39 2.58 8573 ? ? 0.119 7.95 ? ? ? ? 4474 91.0 6 1 2.58 2.84 8416 ? ? 0.081 11.16 ? ? ? ? 4378 91.1 7 1 2.84 3.25 8371 ? ? 0.047 17.47 ? ? ? ? 4268 90.30 8 1 3.25 4.08 8501 ? ? 0.028 28.2 ? ? ? ? 4270 90.00 9 1 4.08 29.25 8784 ? ? 0.2 35.3 ? ? ? ? 4241 87.4 10 1 # _refine.entry_id 2PFW _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 29.248 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 93.100 _refine.ls_number_reflns_obs 42947 _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.pdbx_R_Free_selection_details 'THIN SHELL' _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. RESIDUES 113-115 IN CHAIN A AND 112-115 IN CHAIN B ARE DISORDERED AND ARE NOT MODELED. 3. REFINEMENT WAS PERFORMED AGAINST INTENSITY DATA. 4. UNMERGED INTENSITY DATA WAS MERGED WITH SHELXL MERG 2 OPTION (FRIEDEL PAIRS SEPARATE). 5. THE SE FORM FACTORS WERE MODIFIED WITH f' -1.8 and f" 3.4 6. THE DATA ARE PSEUDO-MEROHEDRALLY TWINNED IN SPACE GROUP P212121 WITH THE TWIN LAW -H,L,K. THE REFINED TWIN FRACTION WAS 0.47. ; _refine.ls_R_factor_all 0.193 _refine.ls_R_factor_obs 0.193 _refine.ls_R_factor_R_free 0.256 _refine.ls_percent_reflns_R_free 5.020 _refine.ls_number_reflns_R_free 2156 _refine.B_iso_mean 26.904 _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.ls_number_parameters 7524 _refine.ls_number_restraints 19194 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 42947 _refine.ls_R_factor_R_work 0.189 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2PFW _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.number_disordered_residues 1 _refine_analyze.occupancy_sum_non_hydrogen 1874.00 _refine_analyze.occupancy_sum_hydrogen 1580.00 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1743 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 111 _refine_hist.number_atoms_total 1874 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 29.248 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d ? 0.006 ? ? 'X-RAY DIFFRACTION' ? s_angle_d ? 0.020 ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? 0.038 ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes ? 0.039 ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? 0.024 ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? 0.028 ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? 0.011 ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? 0.000 ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? 0.063 ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? 0.000 ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 2PFW _pdbx_refine.R_factor_all_4sig_cutoff 0.168 _pdbx_refine.R_factor_all_no_cutoff 0.193 _pdbx_refine.R_factor_obs_4sig_cutoff 0.165 _pdbx_refine.R_factor_obs_no_cutoff 0.189 _pdbx_refine.free_R_factor_4sig_cutoff 0.231 _pdbx_refine.free_R_factor_no_cutoff 0.256 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1728 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 2156 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.020 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.020 _pdbx_refine.number_reflns_obs_4sig_cutoff 34694 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 2PFW _struct.title 'CRYSTAL STRUCTURE OF A RMLC-LIKE CUPIN (SFRI_3105) FROM SHEWANELLA FRIGIDIMARINA NCIMB 400 AT 1.90 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;CUPIN DOMAIN, CUPIN 2 CONSERVED BARREL DOMAIN PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 2PFW # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 108 ? VAL A 112 ? ARG A 107 VAL A 111 5 ? 5 HELX_P HELX_P2 2 ARG B 108 ? VAL B 112 ? ARG B 107 VAL B 111 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C ? ? ? 1_555 A GLN 3 N ? ? A MSE 1 A GLN 2 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A GLN 26 C ? ? ? 1_555 A MSE 27 N ? ? A GLN 25 A MSE 26 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A MSE 27 C ? ? ? 1_555 A LEU 28 N ? ? A MSE 26 A LEU 27 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale4 covale both ? A LEU 34 C ? ? ? 1_555 A MSE 35 N ? ? A LEU 33 A MSE 34 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? A MSE 35 C ? ? ? 1_555 A ALA 36 N ? ? A MSE 34 A ALA 35 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? B MSE 2 C ? ? ? 1_555 B GLN 3 N ? ? B MSE 1 B GLN 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? B GLN 26 C ? ? ? 1_555 B MSE 27 N ? ? B GLN 25 B MSE 26 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale both ? B MSE 27 C ? ? ? 1_555 B LEU 28 N ? ? B MSE 26 B LEU 27 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale9 covale both ? B LEU 34 C ? ? ? 1_555 B MSE 35 N ? ? B LEU 33 B MSE 34 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale10 covale both ? B MSE 35 C ? ? ? 1_555 B ALA 36 N ? ? B MSE 34 B ALA 35 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 105 A . ? SER 104 A PRO 106 A ? PRO 105 A 1 -19.73 2 SER 105 B . ? SER 104 B PRO 106 B ? PRO 105 B 1 -19.01 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? C ? 4 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 8 ? SER A 9 ? PHE A 7 SER A 8 A 2 SER B 81 ? VAL B 84 ? SER B 80 VAL B 83 A 3 SER B 55 ? GLY B 63 ? SER B 54 GLY B 62 A 4 GLY B 98 ? SER B 105 ? GLY B 97 SER B 104 A 5 LEU B 34 ? PHE B 41 ? LEU B 33 PHE B 40 A 6 LEU B 23 ? ASN B 31 ? LEU B 22 ASN B 30 A 7 ILE B 16 ? ASP B 18 ? ILE B 15 ASP B 17 B 1 GLU A 17 ? ASP A 18 ? GLU A 16 ASP A 17 B 2 LEU A 23 ? ASN A 31 ? LEU A 22 ASN A 30 B 3 LEU A 34 ? PHE A 41 ? LEU A 33 PHE A 40 B 4 GLY A 98 ? SER A 105 ? GLY A 97 SER A 104 B 5 SER A 55 ? GLY A 63 ? SER A 54 GLY A 62 B 6 SER A 81 ? VAL A 84 ? SER A 80 VAL A 83 B 7 PHE B 8 ? SER B 9 ? PHE B 7 SER B 8 C 1 ALA A 45 ? HIS A 50 ? ALA A 44 HIS A 49 C 2 HIS A 90 ? CYS A 94 ? HIS A 89 CYS A 93 C 3 PHE A 65 ? VAL A 69 ? PHE A 64 VAL A 68 C 4 VAL A 72 ? LEU A 76 ? VAL A 71 LEU A 75 D 1 GLY B 47 ? HIS B 50 ? GLY B 46 HIS B 49 D 2 HIS B 90 ? VAL B 93 ? HIS B 89 VAL B 92 D 3 PHE B 65 ? VAL B 69 ? PHE B 64 VAL B 68 D 4 VAL B 72 ? LEU B 76 ? VAL B 71 LEU B 75 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 9 ? N SER A 8 O SER B 81 ? O SER B 80 A 2 3 O PHE B 82 ? O PHE B 81 N SER B 58 ? N SER B 57 A 3 4 N GLU B 62 ? N GLU B 61 O ILE B 99 ? O ILE B 98 A 4 5 O GLY B 98 ? O GLY B 97 N PHE B 41 ? N PHE B 40 A 5 6 O ALA B 36 ? O ALA B 35 N LEU B 28 ? N LEU B 27 A 6 7 O ARG B 25 ? O ARG B 24 N GLU B 17 ? N GLU B 16 B 1 2 N GLU A 17 ? N GLU A 16 O ARG A 25 ? O ARG A 24 B 2 3 N LEU A 28 ? N LEU A 27 O ALA A 36 ? O ALA A 35 B 3 4 N VAL A 37 ? N VAL A 36 O ASP A 102 ? O ASP A 101 B 4 5 O ILE A 99 ? O ILE A 98 N GLU A 62 ? N GLU A 61 B 5 6 N SER A 58 ? N SER A 57 O PHE A 82 ? O PHE A 81 B 6 7 N SER A 81 ? N SER A 80 O SER B 9 ? O SER B 8 C 1 2 N ALA A 45 ? N ALA A 44 O CYS A 94 ? O CYS A 93 C 2 3 O GLY A 91 ? O GLY A 90 N ASN A 68 ? N ASN A 67 C 3 4 N PHE A 65 ? N PHE A 64 O LEU A 76 ? O LEU A 75 D 1 2 N GLY B 47 ? N GLY B 46 O ALA B 92 ? O ALA B 91 D 2 3 O GLY B 91 ? O GLY B 90 N ASN B 68 ? N ASN B 67 D 3 4 N PHE B 65 ? N PHE B 64 O LEU B 76 ? O LEU B 75 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B EDO 116 ? 9 'BINDING SITE FOR RESIDUE EDO B 116' AC2 Software B EDO 117 ? 4 'BINDING SITE FOR RESIDUE EDO B 117' AC3 Software B EDO 118 ? 3 'BINDING SITE FOR RESIDUE EDO B 118' AC4 Software A EDO 116 ? 6 'BINDING SITE FOR RESIDUE EDO A 116' AC5 Software B EDO 119 ? 3 'BINDING SITE FOR RESIDUE EDO B 119' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ALA B 51 ? ALA B 50 . ? 1_555 ? 2 AC1 9 HIS B 52 ? HIS B 51 . ? 1_555 ? 3 AC1 9 HIS B 54 ? HIS B 53 . ? 1_555 ? 4 AC1 9 VAL B 84 ? VAL B 83 . ? 1_555 ? 5 AC1 9 PRO B 85 ? PRO B 84 . ? 1_555 ? 6 AC1 9 PRO B 86 ? PRO B 85 . ? 1_555 ? 7 AC1 9 HIS B 87 ? HIS B 86 . ? 1_555 ? 8 AC1 9 VAL B 88 ? VAL B 87 . ? 1_555 ? 9 AC1 9 HIS B 90 ? HIS B 89 . ? 1_555 ? 10 AC2 4 GLN B 56 ? GLN B 55 . ? 1_555 ? 11 AC2 4 PHE B 82 ? PHE B 81 . ? 1_555 ? 12 AC2 4 LEU B 100 ? LEU B 99 . ? 1_555 ? 13 AC2 4 ASP B 102 ? ASP B 101 . ? 1_555 ? 14 AC3 3 HOH H . ? HOH A 145 . ? 1_555 ? 15 AC3 3 GLU B 6 ? GLU B 5 . ? 1_555 ? 16 AC3 3 HIS B 7 ? HIS B 6 . ? 1_555 ? 17 AC4 6 PHE A 41 ? PHE A 40 . ? 1_555 ? 18 AC4 6 GLN A 56 ? GLN A 55 . ? 1_555 ? 19 AC4 6 SER A 58 ? SER A 57 . ? 1_555 ? 20 AC4 6 PHE A 82 ? PHE A 81 . ? 1_555 ? 21 AC4 6 LEU A 100 ? LEU A 99 . ? 1_555 ? 22 AC4 6 ASP A 102 ? ASP A 101 . ? 1_555 ? 23 AC5 3 LYS B 38 ? LYS B 37 . ? 1_555 ? 24 AC5 3 TRP B 40 ? TRP B 39 . ? 1_555 ? 25 AC5 3 ILE B 99 ? ILE B 98 . ? 1_555 ? # _database_PDB_matrix.entry_id 2PFW _database_PDB_matrix.origx[1][1] 1.00000 _database_PDB_matrix.origx[1][2] 0.00000 _database_PDB_matrix.origx[1][3] 0.00000 _database_PDB_matrix.origx[2][1] 0.00000 _database_PDB_matrix.origx[2][2] 1.00000 _database_PDB_matrix.origx[2][3] 0.00000 _database_PDB_matrix.origx[3][1] 0.00000 _database_PDB_matrix.origx[3][2] 0.00000 _database_PDB_matrix.origx[3][3] 1.00000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2PFW _atom_sites.fract_transf_matrix[1][1] 0.01709 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01367 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.01367 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 GLN 3 2 2 GLN GLN A . n A 1 4 GLN 4 3 3 GLN GLN A . n A 1 5 SER 5 4 4 SER SER A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 HIS 7 6 6 HIS HIS A . n A 1 8 PHE 8 7 7 PHE PHE A . n A 1 9 SER 9 8 8 SER SER A . n A 1 10 PHE 10 9 9 PHE PHE A . n A 1 11 GLY 11 10 10 GLY GLY A . n A 1 12 GLU 12 11 11 GLU GLU A . n A 1 13 GLN 13 12 12 GLN GLN A . n A 1 14 THR 14 13 13 THR THR A . n A 1 15 GLU 15 14 14 GLU GLU A . n A 1 16 ILE 16 15 15 ILE ILE A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 ASP 18 17 17 ASP ASP A . n A 1 19 ILE 19 18 18 ILE ILE A . n A 1 20 GLY 20 19 19 GLY GLY A . n A 1 21 GLY 21 20 20 GLY GLY A . n A 1 22 GLY 22 21 21 GLY GLY A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 LYS 24 23 23 LYS LYS A . n A 1 25 ARG 25 24 24 ARG ARG A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 MSE 27 26 26 MSE MSE A . n A 1 28 LEU 28 27 27 LEU LEU A . n A 1 29 GLY 29 28 28 GLY GLY A . n A 1 30 PHE 30 29 29 PHE PHE A . n A 1 31 ASN 31 30 30 ASN ASN A . n A 1 32 HIS 32 31 31 HIS HIS A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 LEU 34 33 33 LEU LEU A . n A 1 35 MSE 35 34 34 MSE MSE A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 VAL 37 36 36 VAL VAL A . n A 1 38 LYS 38 37 37 LYS LYS A . n A 1 39 ILE 39 38 38 ILE ILE A . n A 1 40 TRP 40 39 39 TRP TRP A . n A 1 41 PHE 41 40 40 PHE PHE A . n A 1 42 ASP 42 41 41 ASP ASP A . n A 1 43 LYS 43 42 42 LYS LYS A . n A 1 44 GLY 44 43 43 GLY GLY A . n A 1 45 ALA 45 44 44 ALA ALA A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 TYR 48 47 47 TYR TYR A . n A 1 49 VAL 49 48 48 VAL VAL A . n A 1 50 HIS 50 49 49 HIS HIS A . n A 1 51 ALA 51 50 50 ALA ALA A . n A 1 52 HIS 52 51 51 HIS HIS A . n A 1 53 ARG 53 52 52 ARG ARG A . n A 1 54 HIS 54 53 53 HIS HIS A . n A 1 55 SER 55 54 54 SER SER A . n A 1 56 GLN 56 55 55 GLN GLN A . n A 1 57 VAL 57 56 56 VAL VAL A . n A 1 58 SER 58 57 57 SER SER A . n A 1 59 TYR 59 58 58 TYR TYR A . n A 1 60 VAL 60 59 59 VAL VAL A . n A 1 61 VAL 61 60 60 VAL VAL A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 GLY 63 62 62 GLY GLY A . n A 1 64 GLU 64 63 63 GLU GLU A . n A 1 65 PHE 65 64 64 PHE PHE A . n A 1 66 HIS 66 65 65 HIS HIS A . n A 1 67 VAL 67 66 66 VAL VAL A . n A 1 68 ASN 68 67 67 ASN ASN A . n A 1 69 VAL 69 68 68 VAL VAL A . n A 1 70 ASP 70 69 69 ASP ASP A . n A 1 71 GLY 71 70 70 GLY GLY A . n A 1 72 VAL 72 71 71 VAL VAL A . n A 1 73 ILE 73 72 72 ILE ILE A . n A 1 74 LYS 74 73 73 LYS LYS A . n A 1 75 VAL 75 74 74 VAL VAL A . n A 1 76 LEU 76 75 75 LEU LEU A . n A 1 77 THR 77 76 76 THR THR A . n A 1 78 ALA 78 77 77 ALA ALA A . n A 1 79 GLY 79 78 78 GLY GLY A . n A 1 80 ASP 80 79 79 ASP ASP A . n A 1 81 SER 81 80 80 SER SER A . n A 1 82 PHE 82 81 81 PHE PHE A . n A 1 83 PHE 83 82 82 PHE PHE A . n A 1 84 VAL 84 83 83 VAL VAL A . n A 1 85 PRO 85 84 84 PRO PRO A . n A 1 86 PRO 86 85 85 PRO PRO A . n A 1 87 HIS 87 86 86 HIS HIS A . n A 1 88 VAL 88 87 87 VAL VAL A . n A 1 89 ASP 89 88 88 ASP ASP A . n A 1 90 HIS 90 89 89 HIS HIS A . n A 1 91 GLY 91 90 90 GLY GLY A . n A 1 92 ALA 92 91 91 ALA ALA A . n A 1 93 VAL 93 92 92 VAL VAL A . n A 1 94 CYS 94 93 93 CYS CYS A . n A 1 95 PRO 95 94 94 PRO PRO A . n A 1 96 THR 96 95 95 THR THR A . n A 1 97 GLY 97 96 96 GLY GLY A . n A 1 98 GLY 98 97 97 GLY GLY A . n A 1 99 ILE 99 98 98 ILE ILE A . n A 1 100 LEU 100 99 99 LEU LEU A . n A 1 101 ILE 101 100 100 ILE ILE A . n A 1 102 ASP 102 101 101 ASP ASP A . n A 1 103 THR 103 102 102 THR THR A . n A 1 104 PHE 104 103 103 PHE PHE A . n A 1 105 SER 105 104 104 SER SER A . n A 1 106 PRO 106 105 105 PRO PRO A . n A 1 107 ALA 107 106 106 ALA ALA A . n A 1 108 ARG 108 107 107 ARG ARG A . n A 1 109 GLU 109 108 108 GLU GLU A . n A 1 110 ASP 110 109 109 ASP ASP A . n A 1 111 PHE 111 110 110 PHE PHE A . n A 1 112 VAL 112 111 111 VAL VAL A . n A 1 113 GLU 113 112 112 GLU GLU A . n A 1 114 GLY 114 113 ? ? ? A . n A 1 115 LEU 115 114 ? ? ? A . n A 1 116 SER 116 115 ? ? ? A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 MSE 2 1 1 MSE MSE B . n B 1 3 GLN 3 2 2 GLN GLN B . n B 1 4 GLN 4 3 3 GLN GLN B . n B 1 5 SER 5 4 4 SER SER B . n B 1 6 GLU 6 5 5 GLU GLU B . n B 1 7 HIS 7 6 6 HIS HIS B . n B 1 8 PHE 8 7 7 PHE PHE B . n B 1 9 SER 9 8 8 SER SER B . n B 1 10 PHE 10 9 9 PHE PHE B . n B 1 11 GLY 11 10 10 GLY GLY B . n B 1 12 GLU 12 11 11 GLU GLU B . n B 1 13 GLN 13 12 12 GLN GLN B . n B 1 14 THR 14 13 13 THR THR B . n B 1 15 GLU 15 14 14 GLU GLU B . n B 1 16 ILE 16 15 15 ILE ILE B . n B 1 17 GLU 17 16 16 GLU GLU B . n B 1 18 ASP 18 17 17 ASP ASP B . n B 1 19 ILE 19 18 18 ILE ILE B . n B 1 20 GLY 20 19 19 GLY GLY B . n B 1 21 GLY 21 20 20 GLY GLY B . n B 1 22 GLY 22 21 21 GLY GLY B . n B 1 23 LEU 23 22 22 LEU LEU B . n B 1 24 LYS 24 23 23 LYS LYS B . n B 1 25 ARG 25 24 24 ARG ARG B . n B 1 26 GLN 26 25 25 GLN GLN B . n B 1 27 MSE 27 26 26 MSE MSE B . n B 1 28 LEU 28 27 27 LEU LEU B . n B 1 29 GLY 29 28 28 GLY GLY B . n B 1 30 PHE 30 29 29 PHE PHE B . n B 1 31 ASN 31 30 30 ASN ASN B . n B 1 32 HIS 32 31 31 HIS HIS B . n B 1 33 GLU 33 32 32 GLU GLU B . n B 1 34 LEU 34 33 33 LEU LEU B . n B 1 35 MSE 35 34 34 MSE MSE B . n B 1 36 ALA 36 35 35 ALA ALA B . n B 1 37 VAL 37 36 36 VAL VAL B . n B 1 38 LYS 38 37 37 LYS LYS B . n B 1 39 ILE 39 38 38 ILE ILE B . n B 1 40 TRP 40 39 39 TRP TRP B . n B 1 41 PHE 41 40 40 PHE PHE B . n B 1 42 ASP 42 41 41 ASP ASP B . n B 1 43 LYS 43 42 42 LYS LYS B . n B 1 44 GLY 44 43 43 GLY GLY B . n B 1 45 ALA 45 44 44 ALA ALA B . n B 1 46 GLU 46 45 45 GLU GLU B . n B 1 47 GLY 47 46 46 GLY GLY B . n B 1 48 TYR 48 47 47 TYR TYR B . n B 1 49 VAL 49 48 48 VAL VAL B . n B 1 50 HIS 50 49 49 HIS HIS B . n B 1 51 ALA 51 50 50 ALA ALA B . n B 1 52 HIS 52 51 51 HIS HIS B . n B 1 53 ARG 53 52 52 ARG ARG B . n B 1 54 HIS 54 53 53 HIS HIS B . n B 1 55 SER 55 54 54 SER SER B . n B 1 56 GLN 56 55 55 GLN GLN B . n B 1 57 VAL 57 56 56 VAL VAL B . n B 1 58 SER 58 57 57 SER SER B . n B 1 59 TYR 59 58 58 TYR TYR B . n B 1 60 VAL 60 59 59 VAL VAL B . n B 1 61 VAL 61 60 60 VAL VAL B . n B 1 62 GLU 62 61 61 GLU GLU B . n B 1 63 GLY 63 62 62 GLY GLY B . n B 1 64 GLU 64 63 63 GLU GLU B . n B 1 65 PHE 65 64 64 PHE PHE B . n B 1 66 HIS 66 65 65 HIS HIS B . n B 1 67 VAL 67 66 66 VAL VAL B . n B 1 68 ASN 68 67 67 ASN ASN B . n B 1 69 VAL 69 68 68 VAL VAL B . n B 1 70 ASP 70 69 69 ASP ASP B . n B 1 71 GLY 71 70 70 GLY GLY B . n B 1 72 VAL 72 71 71 VAL VAL B . n B 1 73 ILE 73 72 72 ILE ILE B . n B 1 74 LYS 74 73 73 LYS LYS B . n B 1 75 VAL 75 74 74 VAL VAL B . n B 1 76 LEU 76 75 75 LEU LEU B . n B 1 77 THR 77 76 76 THR THR B . n B 1 78 ALA 78 77 77 ALA ALA B . n B 1 79 GLY 79 78 78 GLY GLY B . n B 1 80 ASP 80 79 79 ASP ASP B . n B 1 81 SER 81 80 80 SER SER B . n B 1 82 PHE 82 81 81 PHE PHE B . n B 1 83 PHE 83 82 82 PHE PHE B . n B 1 84 VAL 84 83 83 VAL VAL B . n B 1 85 PRO 85 84 84 PRO PRO B . n B 1 86 PRO 86 85 85 PRO PRO B . n B 1 87 HIS 87 86 86 HIS HIS B . n B 1 88 VAL 88 87 87 VAL VAL B . n B 1 89 ASP 89 88 88 ASP ASP B . n B 1 90 HIS 90 89 89 HIS HIS B . n B 1 91 GLY 91 90 90 GLY GLY B . n B 1 92 ALA 92 91 91 ALA ALA B . n B 1 93 VAL 93 92 92 VAL VAL B . n B 1 94 CYS 94 93 93 CYS CYS B . n B 1 95 PRO 95 94 94 PRO PRO B . n B 1 96 THR 96 95 95 THR THR B . n B 1 97 GLY 97 96 96 GLY GLY B . n B 1 98 GLY 98 97 97 GLY GLY B . n B 1 99 ILE 99 98 98 ILE ILE B . n B 1 100 LEU 100 99 99 LEU LEU B . n B 1 101 ILE 101 100 100 ILE ILE B . n B 1 102 ASP 102 101 101 ASP ASP B . n B 1 103 THR 103 102 102 THR THR B . n B 1 104 PHE 104 103 103 PHE PHE B . n B 1 105 SER 105 104 104 SER SER B . n B 1 106 PRO 106 105 105 PRO PRO B . n B 1 107 ALA 107 106 106 ALA ALA B . n B 1 108 ARG 108 107 107 ARG ARG B . n B 1 109 GLU 109 108 108 GLU GLU B . n B 1 110 ASP 110 109 109 ASP ASP B . n B 1 111 PHE 111 110 110 PHE PHE B . n B 1 112 VAL 112 111 111 VAL VAL B . n B 1 113 GLU 113 112 ? ? ? B . n B 1 114 GLY 114 113 ? ? ? B . n B 1 115 LEU 115 114 ? ? ? B . n B 1 116 SER 116 115 ? ? ? B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO 1 116 4 EDO EDO A . D 2 EDO 1 116 1 EDO EDO B . E 2 EDO 1 117 2 EDO EDO B . F 2 EDO 1 118 3 EDO EDO B . G 2 EDO 1 119 5 EDO EDO B . H 3 HOH 1 117 6 HOH HOH A . H 3 HOH 2 118 7 HOH HOH A . H 3 HOH 3 119 12 HOH HOH A . H 3 HOH 4 120 14 HOH HOH A . H 3 HOH 5 121 15 HOH HOH A . H 3 HOH 6 122 16 HOH HOH A . H 3 HOH 7 123 17 HOH HOH A . H 3 HOH 8 124 18 HOH HOH A . H 3 HOH 9 125 20 HOH HOH A . H 3 HOH 10 126 21 HOH HOH A . H 3 HOH 11 127 22 HOH HOH A . H 3 HOH 12 128 25 HOH HOH A . H 3 HOH 13 129 26 HOH HOH A . H 3 HOH 14 130 28 HOH HOH A . H 3 HOH 15 131 29 HOH HOH A . H 3 HOH 16 132 30 HOH HOH A . H 3 HOH 17 133 32 HOH HOH A . H 3 HOH 18 134 33 HOH HOH A . H 3 HOH 19 135 35 HOH HOH A . H 3 HOH 20 136 39 HOH HOH A . H 3 HOH 21 137 40 HOH HOH A . H 3 HOH 22 138 41 HOH HOH A . H 3 HOH 23 139 42 HOH HOH A . H 3 HOH 24 140 43 HOH HOH A . H 3 HOH 25 141 47 HOH HOH A . H 3 HOH 26 142 48 HOH HOH A . H 3 HOH 27 143 51 HOH HOH A . H 3 HOH 28 144 52 HOH HOH A . H 3 HOH 29 145 53 HOH HOH A . H 3 HOH 30 146 54 HOH HOH A . H 3 HOH 31 147 55 HOH HOH A . H 3 HOH 32 148 63 HOH HOH A . H 3 HOH 33 149 64 HOH HOH A . H 3 HOH 34 150 66 HOH HOH A . H 3 HOH 35 151 69 HOH HOH A . H 3 HOH 36 152 70 HOH HOH A . H 3 HOH 37 153 71 HOH HOH A . H 3 HOH 38 154 72 HOH HOH A . H 3 HOH 39 155 73 HOH HOH A . H 3 HOH 40 156 74 HOH HOH A . H 3 HOH 41 157 77 HOH HOH A . H 3 HOH 42 158 79 HOH HOH A . H 3 HOH 43 159 82 HOH HOH A . H 3 HOH 44 160 89 HOH HOH A . H 3 HOH 45 161 90 HOH HOH A . H 3 HOH 46 162 91 HOH HOH A . H 3 HOH 47 163 92 HOH HOH A . H 3 HOH 48 164 94 HOH HOH A . H 3 HOH 49 165 95 HOH HOH A . H 3 HOH 50 166 96 HOH HOH A . H 3 HOH 51 167 98 HOH HOH A . H 3 HOH 52 168 105 HOH HOH A . H 3 HOH 53 169 107 HOH HOH A . H 3 HOH 54 170 108 HOH HOH A . H 3 HOH 55 171 109 HOH HOH A . H 3 HOH 56 172 112 HOH HOH A . I 3 HOH 1 120 8 HOH HOH B . I 3 HOH 2 121 9 HOH HOH B . I 3 HOH 3 122 10 HOH HOH B . I 3 HOH 4 123 11 HOH HOH B . I 3 HOH 5 124 13 HOH HOH B . I 3 HOH 6 125 19 HOH HOH B . I 3 HOH 7 126 23 HOH HOH B . I 3 HOH 8 127 24 HOH HOH B . I 3 HOH 9 128 27 HOH HOH B . I 3 HOH 10 129 31 HOH HOH B . I 3 HOH 11 130 34 HOH HOH B . I 3 HOH 12 131 36 HOH HOH B . I 3 HOH 13 132 37 HOH HOH B . I 3 HOH 14 133 38 HOH HOH B . I 3 HOH 15 134 44 HOH HOH B . I 3 HOH 16 135 45 HOH HOH B . I 3 HOH 17 136 46 HOH HOH B . I 3 HOH 18 137 49 HOH HOH B . I 3 HOH 19 138 50 HOH HOH B . I 3 HOH 20 139 56 HOH HOH B . I 3 HOH 21 140 57 HOH HOH B . I 3 HOH 22 141 58 HOH HOH B . I 3 HOH 23 142 59 HOH HOH B . I 3 HOH 24 143 60 HOH HOH B . I 3 HOH 25 144 61 HOH HOH B . I 3 HOH 26 145 62 HOH HOH B . I 3 HOH 27 146 65 HOH HOH B . I 3 HOH 28 147 67 HOH HOH B . I 3 HOH 29 148 68 HOH HOH B . I 3 HOH 30 149 75 HOH HOH B . I 3 HOH 31 150 76 HOH HOH B . I 3 HOH 32 151 78 HOH HOH B . I 3 HOH 33 152 80 HOH HOH B . I 3 HOH 34 153 81 HOH HOH B . I 3 HOH 35 154 83 HOH HOH B . I 3 HOH 36 155 84 HOH HOH B . I 3 HOH 37 156 85 HOH HOH B . I 3 HOH 38 157 86 HOH HOH B . I 3 HOH 39 158 87 HOH HOH B . I 3 HOH 40 159 88 HOH HOH B . I 3 HOH 41 160 93 HOH HOH B . I 3 HOH 42 161 97 HOH HOH B . I 3 HOH 43 162 99 HOH HOH B . I 3 HOH 44 163 100 HOH HOH B . I 3 HOH 45 164 101 HOH HOH B . I 3 HOH 46 165 102 HOH HOH B . I 3 HOH 47 166 103 HOH HOH B . I 3 HOH 48 167 104 HOH HOH B . I 3 HOH 49 168 106 HOH HOH B . I 3 HOH 50 169 110 HOH HOH B . I 3 HOH 51 170 111 HOH HOH B . I 3 HOH 52 171 113 HOH HOH B . I 3 HOH 53 172 114 HOH HOH B . I 3 HOH 54 173 115 HOH HOH B . I 3 HOH 55 174 116 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 27 A MSE 26 ? MET SELENOMETHIONINE 3 A MSE 35 A MSE 34 ? MET SELENOMETHIONINE 4 B MSE 2 B MSE 1 ? MET SELENOMETHIONINE 5 B MSE 27 B MSE 26 ? MET SELENOMETHIONINE 6 B MSE 35 B MSE 34 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4300 ? 1 MORE -4 ? 1 'SSA (A^2)' 9940 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-17 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2017-10-25 6 'Structure model' 1 5 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Author supporting evidence' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' pdbx_struct_assembly_auth_evidence 3 6 'Structure model' database_2 4 6 'Structure model' struct_conn 5 6 'Structure model' struct_ref_seq_dif 6 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_database_2.pdbx_DOI' 2 6 'Structure model' '_database_2.pdbx_database_accession' 3 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 6 'Structure model' '_struct_ref_seq_dif.details' 5 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 2 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 SHELXD . ? ? ? ? phasing ? ? ? 7 autoSHARP . ? ? ? ? phasing ? ? ? 8 SHELXL-97 . ? ? ? ? refinement ? ? ? 9 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 300 ; BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAINS. SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE. ; 999 ; SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A SER 104 ? ? C A SER 104 ? ? N A PRO 105 ? ? 140.80 117.10 23.70 2.80 Y 2 1 C A SER 104 ? ? N A PRO 105 ? ? CA A PRO 105 ? ? 143.55 127.00 16.55 2.40 Y 3 1 CA B SER 104 ? ? C B SER 104 ? ? N B PRO 105 ? ? 140.83 117.10 23.73 2.80 Y 4 1 C B SER 104 ? ? N B PRO 105 ? ? CA B PRO 105 ? ? 143.03 127.00 16.03 2.40 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 2 ? ? 76.47 -62.48 2 1 GLU A 5 ? ? -43.45 155.82 3 1 PRO A 105 ? ? -43.73 167.11 4 1 GLN B 2 ? ? 72.66 -66.82 5 1 GLU B 5 ? ? -48.82 159.61 6 1 TYR B 47 ? ? -37.17 135.81 7 1 PRO B 105 ? ? -43.50 169.56 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 PHE A 29 ? ? ASN A 30 ? ? 149.13 2 1 VAL A 48 ? ? HIS A 49 ? ? -142.73 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLY 113 ? A GLY 114 3 1 Y 1 A LEU 114 ? A LEU 115 4 1 Y 1 A SER 115 ? A SER 116 5 1 Y 1 B GLY 0 ? B GLY 1 6 1 Y 1 B GLU 112 ? B GLU 113 7 1 Y 1 B GLY 113 ? B GLY 114 8 1 Y 1 B LEU 114 ? B LEU 115 9 1 Y 1 B SER 115 ? B SER 116 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #