HEADER OXIDOREDUCTASE 06-APR-07 2PG0 TITLE CRYSTAL STRUCTURE OF ACYL-COA DEHYDROGENASE FROM GEOBACILLUS TITLE 2 KAUSTOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.3.99.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 235909; SOURCE 4 STRAIN: HTA426; SOURCE 5 GENE: GK1316; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL-X; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS GK1316, ACYL-COA DEHYDROGENASE, GEOBACILLUS KAUSTOPHILUS HTA426, KEYWDS 2 STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, SOUTHEAST KEYWDS 3 COLLABORATORY FOR STRUCTURAL GENOMICS, SECSG, NPPSFA, NATIONAL KEYWDS 4 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 5 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.CHEN,L.-Q.CHEN,A.EBIHARA,A.SHINKAI,S.KURAMITSU,S.YOKOYAMA,M.ZHAO, AUTHOR 2 Y.LI,Z.-Q.FU,J.P.ROSE,B.-C.WANG,SOUTHEAST COLLABORATORY FOR AUTHOR 3 STRUCTURAL GENOMICS (SECSG),RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 4 INITIATIVE (RSGI) REVDAT 6 21-FEB-24 2PG0 1 REMARK SEQADV REVDAT 5 24-JAN-18 2PG0 1 AUTHOR JRNL REVDAT 4 13-SEP-17 2PG0 1 REMARK REVDAT 3 13-JUL-11 2PG0 1 VERSN REVDAT 2 24-FEB-09 2PG0 1 VERSN REVDAT 1 08-MAY-07 2PG0 0 JRNL AUTH L.CHEN,L.-Q.CHEN,A.EBIHARA,A.SHINKAI,S.KURAMITSU,S.YOKOYAMA, JRNL AUTH 2 M.ZHAO,Y.LI,Z.-Q.FU,J.P.ROSE,B.-C.WANG JRNL TITL CRYSTAL STRUCTURE OF ACYL-COA DEHYDROGENASE FROM G. JRNL TITL 2 KAUSTOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 94153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4715 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 347 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 566 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -0.75000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.420 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6280 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8504 ; 1.111 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 755 ; 4.873 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 290 ;36.355 ;23.724 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1085 ;13.190 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;14.162 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 915 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4722 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3125 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4328 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 517 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 99 ; 0.208 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.198 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3869 ; 0.656 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6020 ; 0.963 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2915 ; 1.666 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2484 ; 2.668 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PG0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97903 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94229 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 15.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: USING 4 MICROLITER DROPS CONTAINING REMARK 280 EQUAL VOLUMES OF PROTEIN CONCENTRATE (7.75 MG/ML) AND RESERVOIR REMARK 280 SOLUTION CONTAINING 40% V/V MPD, 0.10M CHES (PH 9.4), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.48400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.96800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.96800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.48400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 DIMER BY THE OPERATION -X, -X+Y, -Z+1/3. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 20370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -140.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.48400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 412 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 414 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 ASN A 3 REMARK 465 HIS A 4 REMARK 465 MET A 5 REMARK 465 GLY B 1 REMARK 465 LEU B 2 REMARK 465 ASN B 3 REMARK 465 HIS B 4 REMARK 465 MET B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 LEU B 385 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 357 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 29 -57.07 -122.70 REMARK 500 ASP A 384 91.44 58.81 REMARK 500 ALA B 29 -57.75 -126.97 REMARK 500 ASP B 150 41.97 -100.12 REMARK 500 LYS B 181 92.11 32.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GKA001001316.1 RELATED DB: TARGETDB REMARK 900 RIKEN TARGETDB DBREF 2PG0 A 5 385 UNP Q5L0D5 Q5L0D5_GEOKA 1 381 DBREF 2PG0 B 5 385 UNP Q5L0D5 Q5L0D5_GEOKA 1 381 SEQADV 2PG0 GLY A 1 UNP Q5L0D5 CLONING ARTIFACT SEQADV 2PG0 LEU A 2 UNP Q5L0D5 CLONING ARTIFACT SEQADV 2PG0 ASN A 3 UNP Q5L0D5 CLONING ARTIFACT SEQADV 2PG0 HIS A 4 UNP Q5L0D5 CLONING ARTIFACT SEQADV 2PG0 GLY B 1 UNP Q5L0D5 CLONING ARTIFACT SEQADV 2PG0 LEU B 2 UNP Q5L0D5 CLONING ARTIFACT SEQADV 2PG0 ASN B 3 UNP Q5L0D5 CLONING ARTIFACT SEQADV 2PG0 HIS B 4 UNP Q5L0D5 CLONING ARTIFACT SEQRES 1 A 385 GLY LEU ASN HIS MET THR ALA ARG TYR LEU ARG GLU GLU SEQRES 2 A 385 HIS HIS MET PHE ARG ALA ALA PHE ARG LYS PHE LEU GLU SEQRES 3 A 385 LYS GLU ALA TYR PRO HIS TYR ASN ASP TRP GLU LYS ARG SEQRES 4 A 385 GLY ILE ILE PRO ARG SER PHE TRP ALA LYS MET GLY GLU SEQRES 5 A 385 ASN GLY PHE LEU CYS PRO TRP VAL ASP GLU LYS TYR GLY SEQRES 6 A 385 GLY LEU ASN ALA ASP PHE ALA TYR SER VAL VAL ILE ASN SEQRES 7 A 385 GLU GLU LEU GLU LYS VAL GLY SER SER LEU VAL GLY ILE SEQRES 8 A 385 GLY LEU HIS ASN ASP ILE VAL THR PRO TYR ILE ALA SER SEQRES 9 A 385 TYR GLY THR GLU GLU GLN LYS GLN LYS TRP LEU PRO LYS SEQRES 10 A 385 CYS VAL THR GLY GLU LEU ILE THR ALA ILE ALA MET THR SEQRES 11 A 385 GLU PRO GLY ALA GLY SER ASP LEU ALA ASN ILE SER THR SEQRES 12 A 385 THR ALA VAL LYS ASP GLY ASP TYR TYR ILE VAL ASN GLY SEQRES 13 A 385 GLN LYS THR PHE ILE THR ASN GLY ILE HIS ALA ASP LEU SEQRES 14 A 385 ILE VAL VAL ALA CYS LYS THR ASP PRO GLN ALA LYS PRO SEQRES 15 A 385 PRO HIS ARG GLY ILE SER LEU LEU VAL VAL GLU ARG ASP SEQRES 16 A 385 THR PRO GLY PHE THR ARG GLY ARG LYS LEU GLU LYS VAL SEQRES 17 A 385 GLY LEU HIS ALA GLN ASP THR ALA GLU LEU PHE PHE GLN SEQRES 18 A 385 ASP ALA LYS VAL PRO ALA TYR ASN LEU LEU GLY GLU GLU SEQRES 19 A 385 GLY LYS GLY PHE TYR TYR LEU MET GLU LYS LEU GLN GLN SEQRES 20 A 385 GLU ARG LEU VAL VAL ALA ILE ALA ALA GLN THR ALA ALA SEQRES 21 A 385 GLU VAL MET PHE SER LEU THR LYS GLN TYR VAL LYS GLN SEQRES 22 A 385 ARG THR ALA PHE GLY LYS ARG VAL SER GLU PHE GLN THR SEQRES 23 A 385 VAL GLN PHE ARG LEU ALA GLU MET ALA THR GLU ILE ALA SEQRES 24 A 385 LEU GLY ARG THR PHE VAL ASP ARG VAL ILE GLU GLU HIS SEQRES 25 A 385 MET ALA GLY LYS GLN ILE VAL THR GLU VAL SER MET ALA SEQRES 26 A 385 LYS TRP TRP ILE THR GLU MET ALA LYS ARG VAL ALA ALA SEQRES 27 A 385 GLU ALA MET GLN LEU HIS GLY GLY TYR GLY TYR MET GLU SEQRES 28 A 385 GLU TYR GLU ILE ALA ARG ARG TYR ARG ASP ILE PRO VAL SEQRES 29 A 385 SER ALA ILE TYR ALA GLY THR ASN GLU MET MET LYS THR SEQRES 30 A 385 ILE ILE ALA ARG GLN LEU ASP LEU SEQRES 1 B 385 GLY LEU ASN HIS MET THR ALA ARG TYR LEU ARG GLU GLU SEQRES 2 B 385 HIS HIS MET PHE ARG ALA ALA PHE ARG LYS PHE LEU GLU SEQRES 3 B 385 LYS GLU ALA TYR PRO HIS TYR ASN ASP TRP GLU LYS ARG SEQRES 4 B 385 GLY ILE ILE PRO ARG SER PHE TRP ALA LYS MET GLY GLU SEQRES 5 B 385 ASN GLY PHE LEU CYS PRO TRP VAL ASP GLU LYS TYR GLY SEQRES 6 B 385 GLY LEU ASN ALA ASP PHE ALA TYR SER VAL VAL ILE ASN SEQRES 7 B 385 GLU GLU LEU GLU LYS VAL GLY SER SER LEU VAL GLY ILE SEQRES 8 B 385 GLY LEU HIS ASN ASP ILE VAL THR PRO TYR ILE ALA SER SEQRES 9 B 385 TYR GLY THR GLU GLU GLN LYS GLN LYS TRP LEU PRO LYS SEQRES 10 B 385 CYS VAL THR GLY GLU LEU ILE THR ALA ILE ALA MET THR SEQRES 11 B 385 GLU PRO GLY ALA GLY SER ASP LEU ALA ASN ILE SER THR SEQRES 12 B 385 THR ALA VAL LYS ASP GLY ASP TYR TYR ILE VAL ASN GLY SEQRES 13 B 385 GLN LYS THR PHE ILE THR ASN GLY ILE HIS ALA ASP LEU SEQRES 14 B 385 ILE VAL VAL ALA CYS LYS THR ASP PRO GLN ALA LYS PRO SEQRES 15 B 385 PRO HIS ARG GLY ILE SER LEU LEU VAL VAL GLU ARG ASP SEQRES 16 B 385 THR PRO GLY PHE THR ARG GLY ARG LYS LEU GLU LYS VAL SEQRES 17 B 385 GLY LEU HIS ALA GLN ASP THR ALA GLU LEU PHE PHE GLN SEQRES 18 B 385 ASP ALA LYS VAL PRO ALA TYR ASN LEU LEU GLY GLU GLU SEQRES 19 B 385 GLY LYS GLY PHE TYR TYR LEU MET GLU LYS LEU GLN GLN SEQRES 20 B 385 GLU ARG LEU VAL VAL ALA ILE ALA ALA GLN THR ALA ALA SEQRES 21 B 385 GLU VAL MET PHE SER LEU THR LYS GLN TYR VAL LYS GLN SEQRES 22 B 385 ARG THR ALA PHE GLY LYS ARG VAL SER GLU PHE GLN THR SEQRES 23 B 385 VAL GLN PHE ARG LEU ALA GLU MET ALA THR GLU ILE ALA SEQRES 24 B 385 LEU GLY ARG THR PHE VAL ASP ARG VAL ILE GLU GLU HIS SEQRES 25 B 385 MET ALA GLY LYS GLN ILE VAL THR GLU VAL SER MET ALA SEQRES 26 B 385 LYS TRP TRP ILE THR GLU MET ALA LYS ARG VAL ALA ALA SEQRES 27 B 385 GLU ALA MET GLN LEU HIS GLY GLY TYR GLY TYR MET GLU SEQRES 28 B 385 GLU TYR GLU ILE ALA ARG ARG TYR ARG ASP ILE PRO VAL SEQRES 29 B 385 SER ALA ILE TYR ALA GLY THR ASN GLU MET MET LYS THR SEQRES 30 B 385 ILE ILE ALA ARG GLN LEU ASP LEU HET FAD A 401 53 HET FAD B 401 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *566(H2 O) HELIX 1 1 ARG A 11 ALA A 29 1 19 HELIX 2 2 HIS A 32 GLY A 40 1 9 HELIX 3 3 PRO A 43 ASN A 53 1 11 HELIX 4 4 ASP A 61 GLY A 65 5 5 HELIX 5 5 ASP A 70 GLY A 85 1 16 HELIX 6 6 LEU A 88 ILE A 97 1 10 HELIX 7 7 VAL A 98 GLY A 106 1 9 HELIX 8 8 THR A 107 GLY A 121 1 15 HELIX 9 9 ASP A 137 ILE A 141 5 5 HELIX 10 10 PRO A 182 ARG A 185 5 4 HELIX 11 11 LYS A 236 ARG A 274 1 39 HELIX 12 12 PHE A 284 ALA A 314 1 31 HELIX 13 13 ILE A 318 HIS A 344 1 27 HELIX 14 14 GLY A 345 MET A 350 5 6 HELIX 15 15 TYR A 353 ILE A 362 1 10 HELIX 16 16 PRO A 363 ILE A 367 5 5 HELIX 17 17 THR A 371 LEU A 383 1 13 HELIX 18 18 ARG B 11 ALA B 29 1 19 HELIX 19 19 HIS B 32 GLY B 40 1 9 HELIX 20 20 PRO B 43 ASN B 53 1 11 HELIX 21 21 ASP B 61 GLY B 65 5 5 HELIX 22 22 ASP B 70 GLY B 85 1 16 HELIX 23 23 LEU B 88 ILE B 97 1 10 HELIX 24 24 VAL B 98 GLY B 106 1 9 HELIX 25 25 THR B 107 GLY B 121 1 15 HELIX 26 26 ASP B 137 ILE B 141 5 5 HELIX 27 27 PRO B 182 ARG B 185 5 4 HELIX 28 28 LYS B 236 ARG B 274 1 39 HELIX 29 29 PHE B 284 ALA B 314 1 31 HELIX 30 30 ILE B 318 HIS B 344 1 27 HELIX 31 31 GLY B 345 MET B 350 5 6 HELIX 32 32 TYR B 353 ILE B 362 1 10 HELIX 33 33 PRO B 363 ILE B 367 5 5 HELIX 34 34 THR B 371 LEU B 383 1 13 SHEET 1 A 4 THR A 125 ALA A 128 0 SHEET 2 A 4 LEU A 169 LYS A 175 1 O VAL A 171 N ALA A 128 SHEET 3 A 4 ILE A 187 GLU A 193 -1 O VAL A 192 N ILE A 170 SHEET 4 A 4 LEU A 230 LEU A 231 -1 O LEU A 231 N LEU A 189 SHEET 1 B 4 THR A 144 ASP A 148 0 SHEET 2 B 4 TYR A 151 ILE A 161 -1 O ILE A 153 N VAL A 146 SHEET 3 B 4 ALA A 216 PRO A 226 -1 O VAL A 225 N TYR A 152 SHEET 4 B 4 PHE A 199 ARG A 201 -1 N THR A 200 O PHE A 219 SHEET 1 C 2 THR A 275 ALA A 276 0 SHEET 2 C 2 LYS A 279 ARG A 280 -1 O LYS A 279 N ALA A 276 SHEET 1 D 4 THR B 125 ALA B 128 0 SHEET 2 D 4 LEU B 169 LYS B 175 1 O VAL B 171 N ALA B 128 SHEET 3 D 4 ILE B 187 GLU B 193 -1 O SER B 188 N CYS B 174 SHEET 4 D 4 LEU B 230 LEU B 231 -1 O LEU B 231 N LEU B 189 SHEET 1 E 4 THR B 144 ASP B 148 0 SHEET 2 E 4 TYR B 151 ILE B 161 -1 O TYR B 151 N ASP B 148 SHEET 3 E 4 ALA B 216 PRO B 226 -1 O VAL B 225 N TYR B 152 SHEET 4 E 4 PHE B 199 ARG B 201 -1 N THR B 200 O PHE B 219 SHEET 1 F 2 THR B 275 ALA B 276 0 SHEET 2 F 2 LYS B 279 ARG B 280 -1 O LYS B 279 N ALA B 276 CISPEP 1 LYS A 181 PRO A 182 0 -1.70 CISPEP 2 GLY B 149 ASP B 150 0 4.42 CISPEP 3 LYS B 181 PRO B 182 0 8.64 SITE 1 AC1 29 ILE A 127 MET A 129 THR A 130 GLY A 135 SITE 2 AC1 29 SER A 136 PHE A 160 ILE A 161 THR A 162 SITE 3 AC1 29 GLN A 285 VAL A 364 ILE A 367 TYR A 368 SITE 4 AC1 29 THR A 371 GLU A 373 HOH A 403 HOH A 409 SITE 5 AC1 29 HOH A 444 HOH A 494 HOH A 542 ARG B 274 SITE 6 AC1 29 PHE B 277 VAL B 281 PHE B 284 THR B 286 SITE 7 AC1 29 GLN B 342 LEU B 343 GLY B 346 HOH B 454 SITE 8 AC1 29 HOH B 462 SITE 1 AC2 29 ARG A 274 PHE A 277 VAL A 281 PHE A 284 SITE 2 AC2 29 THR A 286 GLN A 342 LEU A 343 GLY A 346 SITE 3 AC2 29 HOH A 424 HOH A 503 ILE B 127 MET B 129 SITE 4 AC2 29 THR B 130 GLY B 135 SER B 136 PHE B 160 SITE 5 AC2 29 ILE B 161 THR B 162 GLN B 285 VAL B 364 SITE 6 AC2 29 ILE B 367 TYR B 368 THR B 371 GLU B 373 SITE 7 AC2 29 MET B 374 HOH B 406 HOH B 416 HOH B 438 SITE 8 AC2 29 HOH B 497 CRYST1 119.276 119.276 124.452 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008384 0.004840 0.000000 0.00000 SCALE2 0.000000 0.009681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008035 0.00000