HEADER TRANSFERASE 09-APR-07 2PGG TITLE CRYSTAL STRUCTURE OF A BIRNAVIRUS (IBDV) RNA-DEPENDENT RNA POLYMERASE TITLE 2 VP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RDRP, PROTEIN VP1; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFECTIOUS BURSAL DISEASE VIRUS; SOURCE 3 ORGANISM_COMMON: GUMBORO VIRUS; SOURCE 4 ORGANISM_TAXID: 10995; SOURCE 5 STRAIN: D78; SOURCE 6 GENE: VP1; SOURCE 7 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 8 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: SF21; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS POLYMERASE, RDRP, BIRNAVIRUS, IBDV, PERMUTATION, DSRNA VIRUS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.PAN,V.N.VAKHARIA,Y.J.TAO REVDAT 4 21-FEB-24 2PGG 1 REMARK REVDAT 3 24-FEB-09 2PGG 1 VERSN REVDAT 2 12-JUN-07 2PGG 1 JRNL REVDAT 1 22-MAY-07 2PGG 0 JRNL AUTH J.PAN,V.N.VAKHARIA,Y.J.TAO JRNL TITL THE STRUCTURE OF A BIRNAVIRUS POLYMERASE REVEALS A DISTINCT JRNL TITL 2 ACTIVE SITE TOPOLOGY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 7385 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17456597 JRNL DOI 10.1073/PNAS.0611599104 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4072474.680 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 53744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3267 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6739 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 434 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6020 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 427 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 4.98000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.440 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.440 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.150 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.200 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 50.43 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042351. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : OSMIC MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53819 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.33800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 1.3M SODIUM MALONATE, REMARK 280 10MM SODIUM IODIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.67233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 239.34467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 179.50850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 299.18083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.83617 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 119.67233 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 239.34467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 299.18083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 179.50850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.83617 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 603 REMARK 465 GLU A 604 REMARK 465 ASN A 605 REMARK 465 LYS A 606 REMARK 465 SER A 607 REMARK 465 LEU A 608 REMARK 465 LYS A 609 REMARK 465 SER A 610 REMARK 465 LYS A 611 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 181 O THR A 184 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ALA A 144 CB ALA A 144 10666 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 495 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 45 28.28 -75.35 REMARK 500 LEU A 79 64.06 -117.89 REMARK 500 GLN A 87 42.83 -87.10 REMARK 500 GLU A 143 -117.19 77.83 REMARK 500 LEU A 210 57.19 -146.95 REMARK 500 PRO A 221 -146.11 -61.84 REMARK 500 THR A 236 -56.27 -135.50 REMARK 500 ASP A 238 23.38 -61.19 REMARK 500 VAL A 239 -7.05 63.12 REMARK 500 ASP A 242 -75.86 -148.59 REMARK 500 PHE A 243 140.85 -180.00 REMARK 500 GLU A 244 93.78 175.86 REMARK 500 LEU A 260 -45.23 -28.46 REMARK 500 ALA A 401 -119.51 52.48 REMARK 500 SER A 468 -115.20 -96.42 REMARK 500 MET A 473 -121.85 66.60 REMARK 500 SER A 484 103.87 -55.33 REMARK 500 ALA A 487 -18.61 -44.26 REMARK 500 ARG A 508 33.02 75.18 REMARK 500 ALA A 654 30.85 -79.65 REMARK 500 LYS A 655 -1.38 -147.26 REMARK 500 PRO A 658 49.24 -77.70 REMARK 500 ASN A 705 -86.83 -89.36 REMARK 500 ASN A 709 103.77 -55.58 REMARK 500 ASP A 746 35.33 -92.79 REMARK 500 VAL A 789 -72.21 -29.17 REMARK 500 ALA A 790 40.33 -93.42 REMARK 500 HIS A 791 57.84 -155.66 REMARK 500 REMARK 500 REMARK: NULL DBREF 2PGG A 31 804 UNP Q9Q6Q5 RDRP_IBDV 31 804 SEQRES 1 A 774 LEU LEU ILE PRO LYS VAL TRP VAL PRO PRO GLU ASP PRO SEQRES 2 A 774 LEU ALA SER PRO SER ARG LEU ALA LYS PHE LEU ARG GLU SEQRES 3 A 774 ASN GLY TYR LYS VAL LEU GLN PRO ARG SER LEU PRO GLU SEQRES 4 A 774 ASN GLU GLU TYR GLU THR ASP GLN ILE LEU PRO ASP LEU SEQRES 5 A 774 ALA TRP MET ARG GLN ILE GLU GLY ALA VAL LEU LYS PRO SEQRES 6 A 774 THR LEU SER LEU PRO ILE GLY ASP GLN GLU TYR PHE PRO SEQRES 7 A 774 LYS TYR TYR PRO THR HIS ARG PRO SER LYS GLU LYS PRO SEQRES 8 A 774 ASN ALA TYR PRO PRO ASP ILE ALA LEU LEU LYS GLN MET SEQRES 9 A 774 ILE TYR LEU PHE LEU GLN VAL PRO GLU ALA ASN GLU GLY SEQRES 10 A 774 LEU LYS ASP GLU VAL THR LEU LEU THR GLN ASN ILE ARG SEQRES 11 A 774 ASP LYS ALA TYR GLY SER GLY THR TYR MET GLY GLN ALA SEQRES 12 A 774 THR ARG LEU VAL ALA MET LYS GLU VAL ALA THR GLY ARG SEQRES 13 A 774 ASN PRO ASN LYS ASP PRO LEU LYS LEU GLY TYR THR PHE SEQRES 14 A 774 GLU SER ILE ALA GLN LEU LEU ASP ILE THR LEU PRO VAL SEQRES 15 A 774 GLY PRO PRO GLY GLU ASP ASP LYS PRO TRP VAL PRO LEU SEQRES 16 A 774 THR ARG VAL PRO SER ARG MET LEU VAL LEU THR GLY ASP SEQRES 17 A 774 VAL ASP GLY ASP PHE GLU VAL GLU ASP TYR LEU PRO LYS SEQRES 18 A 774 ILE ASN LEU LYS SER SER SER GLY LEU PRO TYR VAL GLY SEQRES 19 A 774 ARG THR LYS GLY GLU THR ILE GLY GLU MET ILE ALA ILE SEQRES 20 A 774 SER ASN GLN PHE LEU ARG GLU LEU SER THR LEU LEU LYS SEQRES 21 A 774 GLN GLY ALA GLY THR LYS GLY SER ASN LYS LYS LYS LEU SEQRES 22 A 774 LEU SER MET LEU SER ASP TYR TRP TYR LEU SER CYS GLY SEQRES 23 A 774 LEU LEU PHE PRO LYS ALA GLU ARG TYR ASP LYS SER THR SEQRES 24 A 774 TRP LEU THR LYS THR ARG ASN ILE TRP SER ALA PRO SER SEQRES 25 A 774 PRO THR HIS LEU MET ILE SER MET ILE THR TRP PRO VAL SEQRES 26 A 774 MET SER ASN SER PRO ASN ASN VAL LEU ASN ILE GLU GLY SEQRES 27 A 774 CYS PRO SER LEU TYR LYS PHE ASN PRO PHE ARG GLY GLY SEQRES 28 A 774 LEU ASN ARG ILE VAL GLU TRP ILE LEU ALA PRO GLU GLU SEQRES 29 A 774 PRO LYS ALA LEU VAL TYR ALA ASP ASN ILE TYR ILE VAL SEQRES 30 A 774 HIS SER ASN THR TRP TYR SER ILE ASP LEU GLU LYS GLY SEQRES 31 A 774 GLU ALA ASN CYS THR ARG GLN HIS MET GLN ALA ALA MET SEQRES 32 A 774 TYR TYR ILE LEU THR ARG GLY TRP SER ASP ASN GLY ASP SEQRES 33 A 774 PRO MET PHE ASN GLN THR TRP ALA THR PHE ALA MET ASN SEQRES 34 A 774 ILE ALA PRO ALA LEU VAL VAL ASP SER SER CYS LEU ILE SEQRES 35 A 774 MET ASN LEU GLN ILE LYS THR TYR GLY GLN GLY SER GLY SEQRES 36 A 774 ASN ALA ALA THR PHE ILE ASN ASN HIS LEU LEU SER THR SEQRES 37 A 774 LEU VAL LEU ASP GLN TRP ASN LEU MET ARG GLN PRO ARG SEQRES 38 A 774 PRO ASP SER GLU GLU PHE LYS SER ILE GLU ASP LYS LEU SEQRES 39 A 774 GLY ILE ASN PHE LYS ILE GLU ARG SER ILE ASP ASP ILE SEQRES 40 A 774 ARG GLY LYS LEU ARG GLN LEU VAL LEU LEU ALA GLN PRO SEQRES 41 A 774 GLY TYR LEU SER GLY GLY VAL GLU PRO GLU GLN SER SER SEQRES 42 A 774 PRO THR VAL GLU LEU ASP LEU LEU GLY TRP SER ALA THR SEQRES 43 A 774 TYR SER LYS ASP LEU GLY ILE TYR VAL PRO VAL LEU ASP SEQRES 44 A 774 LYS GLU ARG LEU PHE CYS SER ALA ALA TYR PRO LYS GLY SEQRES 45 A 774 VAL GLU ASN LYS SER LEU LYS SER LYS VAL GLY ILE GLU SEQRES 46 A 774 GLN ALA TYR LYS VAL VAL ARG TYR GLU ALA LEU ARG LEU SEQRES 47 A 774 VAL GLY GLY TRP ASN TYR PRO LEU LEU ASN LYS ALA CYS SEQRES 48 A 774 LYS ASN ASN ALA GLY ALA ALA ARG ARG HIS LEU GLU ALA SEQRES 49 A 774 LYS GLY PHE PRO LEU ASP GLU PHE LEU ALA GLU TRP SER SEQRES 50 A 774 GLU LEU SER GLU PHE GLY GLU ALA PHE GLU GLY PHE ASN SEQRES 51 A 774 ILE LYS LEU THR VAL THR SER GLU SER LEU ALA GLU LEU SEQRES 52 A 774 ASN LYS PRO VAL PRO PRO LYS PRO PRO ASN VAL ASN ARG SEQRES 53 A 774 PRO VAL ASN THR GLY GLY LEU LYS ALA VAL SER ASN ALA SEQRES 54 A 774 LEU LYS THR GLY ARG TYR ARG ASN GLU ALA GLY LEU SER SEQRES 55 A 774 GLY LEU VAL LEU LEU ALA THR ALA ARG SER ARG LEU GLN SEQRES 56 A 774 ASP ALA VAL LYS ALA LYS ALA GLU ALA GLU LYS LEU HIS SEQRES 57 A 774 LYS SER LYS PRO ASP ASP PRO ASP ALA ASP TRP PHE GLU SEQRES 58 A 774 ARG SER GLU THR LEU SER ASP LEU LEU GLU LYS ALA ASP SEQRES 59 A 774 ILE ALA SER LYS VAL ALA HIS SER ALA LEU VAL GLU THR SEQRES 60 A 774 SER ASP ALA LEU GLU ALA VAL FORMUL 2 HOH *427(H2 O) HELIX 1 1 SER A 46 ASN A 57 1 12 HELIX 2 2 THR A 75 LEU A 79 1 5 HELIX 3 3 LEU A 82 GLN A 87 1 6 HELIX 4 4 ASP A 127 VAL A 141 1 15 HELIX 5 5 ASN A 145 ASP A 161 1 17 HELIX 6 6 THR A 168 THR A 184 1 17 HELIX 7 7 ASP A 191 LEU A 195 5 5 HELIX 8 8 THR A 198 LEU A 210 1 13 HELIX 9 9 VAL A 228 ARG A 231 5 4 HELIX 10 10 GLY A 259 VAL A 263 5 5 HELIX 11 11 THR A 266 GLU A 269 5 4 HELIX 12 12 THR A 270 LYS A 290 1 21 HELIX 13 13 SER A 298 TYR A 310 1 13 HELIX 14 14 TRP A 311 LEU A 313 5 3 HELIX 15 15 SER A 328 TRP A 330 5 3 HELIX 16 16 PRO A 341 SER A 357 1 17 HELIX 17 17 GLY A 380 ALA A 391 1 12 HELIX 18 18 LYS A 419 CYS A 424 5 6 HELIX 19 19 THR A 425 TRP A 441 1 17 HELIX 20 20 ASN A 450 ILE A 460 1 11 HELIX 21 21 ILE A 460 VAL A 466 1 7 HELIX 22 22 ALA A 488 MET A 507 1 20 HELIX 23 23 SER A 514 SER A 519 1 6 HELIX 24 24 SER A 519 GLY A 525 1 7 HELIX 25 25 ASP A 536 ALA A 548 1 13 HELIX 26 26 ASP A 589 TYR A 599 1 11 HELIX 27 27 GLY A 613 GLY A 630 1 18 HELIX 28 28 GLY A 631 ASN A 633 5 3 HELIX 29 29 TYR A 634 ALA A 654 1 21 HELIX 30 30 PRO A 658 LEU A 663 1 6 HELIX 31 31 ALA A 664 SER A 670 5 7 HELIX 32 32 PHE A 672 ASN A 680 5 9 HELIX 33 33 THR A 686 LYS A 695 1 10 HELIX 34 34 GLY A 712 THR A 722 1 11 HELIX 35 35 ALA A 729 SER A 742 1 14 HELIX 36 36 ASP A 746 LYS A 761 1 16 HELIX 37 37 ASP A 768 ALA A 783 1 16 HELIX 38 38 SER A 792 ALA A 803 1 12 SHEET 1 A 2 LEU A 67 PRO A 68 0 SHEET 2 A 2 GLU A 105 TYR A 106 -1 O TYR A 106 N LEU A 67 SHEET 1 B 2 GLU A 71 GLU A 74 0 SHEET 2 B 2 THR A 96 LEU A 99 -1 O LEU A 97 N TYR A 73 SHEET 1 C 2 LYS A 162 GLY A 165 0 SHEET 2 C 2 GLU A 323 ASP A 326 -1 O GLU A 323 N GLY A 165 SHEET 1 D 2 LEU A 233 LEU A 235 0 SHEET 2 D 2 VAL A 245 ASP A 247 -1 O GLU A 246 N VAL A 234 SHEET 1 E 4 ASN A 336 SER A 339 0 SHEET 2 E 4 CYS A 315 PRO A 320 -1 N PHE A 319 O ILE A 337 SHEET 3 E 4 SER A 469 ILE A 472 1 O LEU A 471 N GLY A 316 SHEET 4 E 4 LEU A 475 LYS A 478 -1 O ILE A 477 N CYS A 470 SHEET 1 F 4 LYS A 396 TYR A 400 0 SHEET 2 F 4 ASN A 403 HIS A 408 -1 O TYR A 405 N LEU A 398 SHEET 3 F 4 THR A 411 LEU A 417 -1 O ILE A 415 N ILE A 404 SHEET 4 F 4 PHE A 528 ILE A 534 -1 O LYS A 529 N ASP A 416 SHEET 1 G 2 SER A 442 ASP A 443 0 SHEET 2 G 2 ASP A 446 PRO A 447 -1 O ASP A 446 N ASP A 443 SHEET 1 H 3 VAL A 566 LEU A 570 0 SHEET 2 H 3 TRP A 573 TYR A 577 -1 O TRP A 573 N LEU A 570 SHEET 3 H 3 TYR A 584 LEU A 588 -1 O VAL A 587 N SER A 574 CISPEP 1 ARG A 115 PRO A 116 0 -0.48 CISPEP 2 GLU A 394 PRO A 395 0 0.03 CRYST1 122.103 122.103 359.017 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008190 0.004728 0.000000 0.00000 SCALE2 0.000000 0.009457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002785 0.00000