HEADER HYDROLASE 10-APR-07 2PGR TITLE CRYSTAL STRUCTURE OF ADENOSINE DEAMINASE FROM PLASMODIUM VIVAX IN TITLE 2 COMPLEX WITH PENTOSTATIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE DEAMINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.4.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. VIVAX; SOURCE 4 ORGANISM_TAXID: 5855; SOURCE 5 GENE: PV111245; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BG1861 KEYWDS METALLO-DEPENDENT HYDROLASE, STRUCTURAL GENOMICS, MEDICAL STRUCTURAL KEYWDS 2 GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM, MSGPP, STRUCTURAL KEYWDS 3 GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM, SGPP, PSI, PROTEIN KEYWDS 4 STRUCTURE INITIATIVE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.T.LARSON,E.A.MERRITT,STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA AUTHOR 2 CONSORTIUM (SGPP) REVDAT 8 15-NOV-23 2PGR 1 REMARK REVDAT 7 30-AUG-23 2PGR 1 REMARK LINK REVDAT 6 18-OCT-17 2PGR 1 REMARK REVDAT 5 13-JUL-11 2PGR 1 VERSN REVDAT 4 24-FEB-09 2PGR 1 VERSN REVDAT 3 19-AUG-08 2PGR 1 JRNL REVDAT 2 02-OCT-07 2PGR 1 AUTHOR REMARK REVDAT 1 24-APR-07 2PGR 0 JRNL AUTH E.T.LARSON,W.DENG,B.E.KRUMM,A.NAPULI,N.MUELLER, JRNL AUTH 2 W.C.VAN VOORHIS,F.S.BUCKNER,E.FAN,A.LAURICELLA,G.DETITTA, JRNL AUTH 3 J.LUFT,F.ZUCKER,W.G.HOL,C.L.VERLINDE,E.A.MERRITT JRNL TITL STRUCTURES OF SUBSTRATE- AND INHIBITOR-BOUND ADENOSINE JRNL TITL 2 DEAMINASE FROM A HUMAN MALARIA PARASITE SHOW A DRAMATIC JRNL TITL 3 CONFORMATIONAL CHANGE AND SHED LIGHT ON DRUG SELECTIVITY. JRNL REF J.MOL.BIOL. V. 381 975 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18602399 JRNL DOI 10.1016/J.JMB.2008.06.048 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 23771 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1171 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1613 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2915 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 32.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.19000 REMARK 3 B22 (A**2) : -1.77000 REMARK 3 B33 (A**2) : 0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.060 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3039 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2054 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4101 ; 0.883 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5028 ; 0.780 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 5.291 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;32.483 ;25.405 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 565 ;12.678 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;10.601 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 450 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3350 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 591 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 657 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2171 ; 0.163 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1525 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1444 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 122 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.098 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.094 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 28 ; 0.174 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.102 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2336 ; 1.458 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 732 ; 0.324 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2938 ; 1.715 ; 3.750 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1400 ; 2.568 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1163 ; 3.496 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0770 7.2420 24.6050 REMARK 3 T TENSOR REMARK 3 T11: -0.0133 T22: 0.0608 REMARK 3 T33: 0.1549 T12: -0.0700 REMARK 3 T13: 0.0073 T23: -0.1086 REMARK 3 L TENSOR REMARK 3 L11: 5.0455 L22: 3.1576 REMARK 3 L33: 5.5888 L12: -0.9754 REMARK 3 L13: -4.3763 L23: 0.5118 REMARK 3 S TENSOR REMARK 3 S11: -0.2723 S12: 0.7243 S13: -0.4695 REMARK 3 S21: -0.2167 S22: 0.0654 S23: 0.3225 REMARK 3 S31: 0.2635 S32: -0.6726 S33: 0.2069 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6750 9.6900 35.8560 REMARK 3 T TENSOR REMARK 3 T11: 0.1305 T22: 0.0617 REMARK 3 T33: 0.0791 T12: -0.0425 REMARK 3 T13: 0.0400 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.1763 L22: 2.0762 REMARK 3 L33: 0.9832 L12: -0.4224 REMARK 3 L13: -0.0964 L23: 0.1106 REMARK 3 S TENSOR REMARK 3 S11: -0.0429 S12: 0.0015 S13: -0.2057 REMARK 3 S21: 0.3905 S22: -0.0628 S23: -0.0398 REMARK 3 S31: 0.0637 S32: 0.0908 S33: 0.1057 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0030 15.0450 48.4500 REMARK 3 T TENSOR REMARK 3 T11: 0.3098 T22: 0.0728 REMARK 3 T33: -0.0449 T12: -0.0653 REMARK 3 T13: -0.0298 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 1.4881 L22: 5.1247 REMARK 3 L33: 1.5135 L12: -0.7975 REMARK 3 L13: 0.5314 L23: -0.6917 REMARK 3 S TENSOR REMARK 3 S11: 0.0603 S12: -0.3378 S13: 0.0359 REMARK 3 S21: 1.0393 S22: 0.0179 S23: -0.0403 REMARK 3 S31: 0.2879 S32: 0.0871 S33: -0.0783 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2080 11.2920 28.3160 REMARK 3 T TENSOR REMARK 3 T11: 0.0543 T22: 0.0551 REMARK 3 T33: 0.0724 T12: -0.0031 REMARK 3 T13: 0.0309 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.8628 L22: 2.9470 REMARK 3 L33: 1.8787 L12: 0.7850 REMARK 3 L13: 0.8883 L23: 0.9460 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: 0.1298 S13: -0.2533 REMARK 3 S21: 0.1085 S22: 0.0437 S23: -0.3219 REMARK 3 S31: 0.1468 S32: 0.2387 S33: -0.0833 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 194 REMARK 3 ORIGIN FOR THE GROUP (A): 39.9600 25.9160 29.4090 REMARK 3 T TENSOR REMARK 3 T11: 0.0340 T22: 0.0711 REMARK 3 T33: 0.0998 T12: -0.0196 REMARK 3 T13: 0.0183 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.8530 L22: 4.5704 REMARK 3 L33: 9.5459 L12: 1.3773 REMARK 3 L13: -0.8945 L23: 3.0499 REMARK 3 S TENSOR REMARK 3 S11: -0.0369 S12: 0.0572 S13: -0.0168 REMARK 3 S21: -0.0088 S22: 0.1757 S23: -0.1980 REMARK 3 S31: -0.0777 S32: 0.2882 S33: -0.1388 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 195 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3240 35.1750 30.4400 REMARK 3 T TENSOR REMARK 3 T11: 0.1053 T22: 0.0324 REMARK 3 T33: 0.0449 T12: -0.0618 REMARK 3 T13: -0.0158 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.8292 L22: 2.1127 REMARK 3 L33: 2.5032 L12: 0.6354 REMARK 3 L13: -0.7393 L23: 0.5635 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: 0.0550 S13: 0.1607 REMARK 3 S21: -0.0131 S22: -0.0543 S23: 0.0314 REMARK 3 S31: -0.3037 S32: 0.1355 S33: 0.0836 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 259 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0070 40.3930 27.9380 REMARK 3 T TENSOR REMARK 3 T11: 0.0987 T22: -0.0920 REMARK 3 T33: 0.2311 T12: -0.0038 REMARK 3 T13: -0.0625 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 6.8804 L22: 2.3924 REMARK 3 L33: 20.0182 L12: -2.0794 REMARK 3 L13: -0.0173 L23: 0.0376 REMARK 3 S TENSOR REMARK 3 S11: 0.1412 S12: 0.1898 S13: 1.0013 REMARK 3 S21: -0.1555 S22: 0.1227 S23: -0.0100 REMARK 3 S31: -0.4418 S32: 0.1572 S33: -0.2640 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 270 A 322 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5600 24.0990 34.7530 REMARK 3 T TENSOR REMARK 3 T11: 0.0738 T22: 0.0623 REMARK 3 T33: 0.0862 T12: -0.0395 REMARK 3 T13: 0.0598 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 1.2170 L22: 2.8753 REMARK 3 L33: 1.6485 L12: -0.2401 REMARK 3 L13: 0.4468 L23: -0.4396 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: -0.0371 S13: 0.0271 REMARK 3 S21: 0.2966 S22: -0.0971 S23: 0.3644 REMARK 3 S31: -0.1422 S32: -0.1397 S33: 0.1013 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 323 A 363 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5410 19.0100 21.9970 REMARK 3 T TENSOR REMARK 3 T11: 0.0353 T22: 0.0862 REMARK 3 T33: 0.0825 T12: -0.0273 REMARK 3 T13: -0.0329 T23: -0.0655 REMARK 3 L TENSOR REMARK 3 L11: 2.9361 L22: 3.9752 REMARK 3 L33: 0.8696 L12: 0.6130 REMARK 3 L13: -0.9098 L23: -0.8311 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: 0.3508 S13: -0.1615 REMARK 3 S21: -0.3738 S22: -0.1000 S23: 0.3116 REMARK 3 S31: -0.1275 S32: -0.1191 S33: 0.1158 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. TLS GROUPS WERE DEFINED USING THE TLSMD SERVER: REMARK 3 J.PAINTER & E.A.MERRITT (2006) ACTA CRYST. D62, 439-450, REMARK 3 J.PAINTER & E.A.MERRITT (2006) J.APPL.CRYST. 39, 109-111. ATOM REMARK 3 RECORD CONTAINS RESIDUAL B FACTORS ONLY REMARK 4 REMARK 4 2PGR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042358. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91722 REMARK 200 MONOCHROMATOR : DOUBLE SI(111) CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23772 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2PGF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33% PEG 20000, 0.1 M TAPS (PH 9.0), REMARK 280 0.1 M SODIUM PHOSPHATE (MONOBASIC), 16% ACETONITRILE, 5 MM REMARK 280 ADENOSINE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.01700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 25.01700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 71.74400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.19300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 71.74400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.19300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.01700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 71.74400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.19300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 25.01700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 71.74400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.19300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 ILE A 3 REMARK 465 LEU A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 253 -83.88 71.94 REMARK 500 ASP A 310 -74.39 76.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 42 NE2 REMARK 620 2 HIS A 44 NE2 104.7 REMARK 620 3 HIS A 226 NE2 90.1 94.8 REMARK 620 4 ASP A 310 OD1 90.1 101.8 162.8 REMARK 620 5 DCF A 501 O8 129.4 126.0 85.8 80.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCF A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CCN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CCN A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PVIV005676AAA RELATED DB: TARGETDB REMARK 900 RELATED ID: 2QVN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ADENOSINE DEAMINASE FROM PLASMODIUM VIVAX IN REMARK 900 COMPLEX WITH GUANOSINE REMARK 900 RELATED ID: 2PGF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ADENOSINE DEAMINASE FROM PLASMODIUM VIVAX IN REMARK 900 COMPLEX WITH ADENOSINE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT REMARK 999 THE UNIPROT DATABASE AT THE TIME OF DEPOSITION. REMARK 999 THE SEQUENCE INFORMATION IS AVAILABLE AT PLASMODB, REMARK 999 THE AUTHORITATIVE SEQUENCE REPOSITORY FOR PLASMODIUM REMARK 999 SPECIES, WITH ACCESSION CODE PV111245. DUE TO CLONING REMARK 999 PROCESS, THE CRYSTALLIZED POLYPEPTIDE HAS ADDITION OF REMARK 999 AN UNCLEAVABLE N-TERMINAL HIS TAG (RESIDUES -7 TO 0). DBREF 2PGR A 1 363 UNP A5KE01 A5KE01_PLAVI 1 363 SEQRES 1 A 371 MSE ALA HIS HIS HIS HIS HIS HIS MSE ASN ILE LEU GLN SEQRES 2 A 371 GLU PRO ILE ASP PHE LEU LYS LYS GLU GLU LEU LYS ASN SEQRES 3 A 371 ILE ASP LEU SER GLN MSE SER LYS LYS GLU ARG TYR LYS SEQRES 4 A 371 ILE TRP LYS ARG ILE PRO LYS CYS GLU LEU HIS CYS HIS SEQRES 5 A 371 LEU ASP LEU CYS PHE SER ALA ASP PHE PHE VAL SER CYS SEQRES 6 A 371 ILE ARG LYS TYR ASN LEU GLN PRO ASN LEU SER ASP GLU SEQRES 7 A 371 GLU VAL LEU ASP TYR TYR LEU PHE ALA LYS GLY GLY LYS SEQRES 8 A 371 SER LEU GLY GLU PHE VAL GLU LYS ALA ILE LYS VAL ALA SEQRES 9 A 371 ASP ILE PHE HIS ASP TYR GLU VAL ILE GLU ASP LEU ALA SEQRES 10 A 371 LYS HIS ALA VAL PHE ASN LYS TYR LYS GLU GLY VAL VAL SEQRES 11 A 371 LEU MSE GLU PHE ARG TYR SER PRO THR PHE VAL ALA PHE SEQRES 12 A 371 LYS TYR ASN LEU ASP ILE GLU LEU ILE HIS GLN ALA ILE SEQRES 13 A 371 VAL LYS GLY ILE LYS GLU VAL VAL GLU LEU LEU ASP HIS SEQRES 14 A 371 LYS ILE HIS VAL ALA LEU MSE CYS ILE GLY ASP THR GLY SEQRES 15 A 371 HIS GLU ALA ALA ASN ILE LYS ALA SER ALA ASP PHE CYS SEQRES 16 A 371 LEU LYS HIS LYS ALA ASP PHE VAL GLY PHE ASP HIS GLY SEQRES 17 A 371 GLY HIS GLU VAL ASP LEU LYS GLU TYR LYS GLU ILE PHE SEQRES 18 A 371 ASP TYR VAL ARG GLU SER GLY VAL PRO LEU SER VAL HIS SEQRES 19 A 371 ALA GLY GLU ASP VAL THR LEU PRO ASN LEU ASN THR LEU SEQRES 20 A 371 TYR SER ALA ILE GLN VAL LEU LYS VAL GLU ARG ILE GLY SEQRES 21 A 371 HIS GLY ILE ARG VAL ALA GLU SER GLN GLU LEU ILE ASP SEQRES 22 A 371 MSE VAL LYS GLU LYS ASN ILE LEU LEU GLU VAL CYS PRO SEQRES 23 A 371 ILE SER ASN VAL LEU LEU LYS ASN ALA LYS SER MSE ASP SEQRES 24 A 371 THR HIS PRO ILE ARG GLN LEU TYR ASP ALA GLY VAL LYS SEQRES 25 A 371 VAL SER VAL ASN SER ASP ASP PRO GLY MSE PHE LEU THR SEQRES 26 A 371 ASN ILE ASN ASP ASP TYR GLU GLU LEU TYR THR HIS LEU SEQRES 27 A 371 ASN PHE THR LEU GLU ASP PHE MSE LYS MSE ASN GLU TRP SEQRES 28 A 371 ALA LEU GLU LYS SER PHE MSE ASP SER ASN ILE LYS ASP SEQRES 29 A 371 LYS ILE LYS ASN LEU TYR PHE MODRES 2PGR MSE A 24 MET SELENOMETHIONINE MODRES 2PGR MSE A 124 MET SELENOMETHIONINE MODRES 2PGR MSE A 168 MET SELENOMETHIONINE MODRES 2PGR MSE A 266 MET SELENOMETHIONINE MODRES 2PGR MSE A 290 MET SELENOMETHIONINE MODRES 2PGR MSE A 314 MET SELENOMETHIONINE MODRES 2PGR MSE A 338 MET SELENOMETHIONINE MODRES 2PGR MSE A 340 MET SELENOMETHIONINE MODRES 2PGR MSE A 350 MET SELENOMETHIONINE HET MSE A 24 16 HET MSE A 124 8 HET MSE A 168 8 HET MSE A 266 8 HET MSE A 290 8 HET MSE A 314 8 HET MSE A 338 8 HET MSE A 340 8 HET MSE A 350 8 HET ZN A 401 1 HET DCF A 501 19 HET CCN A 601 3 HET CCN A 602 3 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM DCF 2'-DEOXYCOFORMYCIN HETNAM CCN ACETONITRILE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 DCF C11 H16 N4 O4 FORMUL 4 CCN 2(C2 H3 N) FORMUL 6 HOH *110(H2 O) HELIX 1 1 GLU A 15 ILE A 19 5 5 HELIX 2 2 ASP A 20 MSE A 24 5 5 HELIX 3 3 SER A 25 ARG A 35 1 11 HELIX 4 4 ASP A 46 CYS A 48 5 3 HELIX 5 5 SER A 50 TYR A 61 1 12 HELIX 6 6 SER A 68 LEU A 77 1 10 HELIX 7 7 SER A 84 ALA A 96 1 13 HELIX 8 8 ASP A 97 PHE A 99 5 3 HELIX 9 9 ASP A 101 GLY A 120 1 20 HELIX 10 10 SER A 129 PHE A 135 1 7 HELIX 11 11 ASP A 140 LEU A 159 1 20 HELIX 12 12 ASN A 179 HIS A 190 1 12 HELIX 13 13 ASP A 205 GLU A 208 5 4 HELIX 14 14 TYR A 209 SER A 219 1 11 HELIX 15 15 LEU A 236 VAL A 245 1 10 HELIX 16 16 ILE A 255 GLU A 259 5 5 HELIX 17 17 SER A 260 LYS A 270 1 11 HELIX 18 18 CYS A 277 LEU A 284 1 8 HELIX 19 19 PRO A 294 ALA A 301 1 8 HELIX 20 20 ASP A 311 LEU A 316 1 6 HELIX 21 21 ASN A 318 ASN A 331 1 14 HELIX 22 22 THR A 333 SER A 348 1 16 HELIX 23 23 ASP A 351 PHE A 363 1 13 SHEET 1 A 4 LYS A 38 HIS A 44 0 SHEET 2 A 4 VAL A 121 TYR A 128 1 O GLU A 125 N GLU A 40 SHEET 3 A 4 HIS A 164 THR A 173 1 O HIS A 164 N MSE A 124 SHEET 4 A 4 PHE A 194 GLY A 201 1 O VAL A 195 N LEU A 167 SHEET 1 B 4 SER A 224 ALA A 227 0 SHEET 2 B 4 ARG A 250 HIS A 253 1 O GLY A 252 N VAL A 225 SHEET 3 B 4 LEU A 273 VAL A 276 1 O GLU A 275 N ILE A 251 SHEET 4 B 4 LYS A 304 VAL A 307 1 O LYS A 304 N LEU A 274 LINK C GLN A 23 N AMSE A 24 1555 1555 1.33 LINK C GLN A 23 N BMSE A 24 1555 1555 1.33 LINK C AMSE A 24 N SER A 25 1555 1555 1.33 LINK C BMSE A 24 N SER A 25 1555 1555 1.33 LINK C LEU A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N GLU A 125 1555 1555 1.33 LINK C LEU A 167 N MSE A 168 1555 1555 1.33 LINK C MSE A 168 N CYS A 169 1555 1555 1.32 LINK C ASP A 265 N MSE A 266 1555 1555 1.33 LINK C MSE A 266 N VAL A 267 1555 1555 1.33 LINK C SER A 289 N MSE A 290 1555 1555 1.33 LINK C MSE A 290 N ASP A 291 1555 1555 1.34 LINK C GLY A 313 N MSE A 314 1555 1555 1.33 LINK C MSE A 314 N PHE A 315 1555 1555 1.33 LINK C PHE A 337 N MSE A 338 1555 1555 1.33 LINK C MSE A 338 N LYS A 339 1555 1555 1.33 LINK C LYS A 339 N MSE A 340 1555 1555 1.33 LINK C MSE A 340 N ASN A 341 1555 1555 1.33 LINK C PHE A 349 N MSE A 350 1555 1555 1.33 LINK C MSE A 350 N ASP A 351 1555 1555 1.33 LINK NE2 HIS A 42 ZN ZN A 401 1555 1555 2.08 LINK NE2 HIS A 44 ZN ZN A 401 1555 1555 2.20 LINK NE2 HIS A 226 ZN ZN A 401 1555 1555 2.33 LINK OD1 ASP A 310 ZN ZN A 401 1555 1555 2.35 LINK ZN ZN A 401 O8 DCF A 501 1555 1555 1.92 SITE 1 AC1 5 HIS A 42 HIS A 44 HIS A 226 ASP A 310 SITE 2 AC1 5 DCF A 501 SITE 1 AC2 15 HIS A 42 HIS A 44 ASP A 46 LEU A 85 SITE 2 AC2 15 PHE A 88 ILE A 170 ASP A 172 GLY A 201 SITE 3 AC2 15 HIS A 226 GLU A 229 HIS A 253 ASP A 310 SITE 4 AC2 15 ASP A 311 ZN A 401 HOH A 687 SITE 1 AC3 3 ASN A 179 ILE A 180 LYS A 181 SITE 1 AC4 3 VAL A 156 HIS A 164 VAL A 165 CRYST1 143.488 146.386 50.034 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006969 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019986 0.00000