HEADER HYDROLASE 10-APR-07 2PGS TITLE CRYSTAL STRUCTURE OF A PUTATIVE DEOXYGUANOSINETRIPHOSPHATE TITLE 2 TRIPHOSPHOHYDROLASE FROM PSEUDOMONAS SYRINGAE PV. PHASEOLICOLA 1448A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DEOXYGUANOSINETRIPHOSPHATE TRIPHOSPHOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. PHASEOLICOLA 1448A; SOURCE 3 ORGANISM_TAXID: 264730; SOURCE 4 STRAIN: 1448A, RACE 6; SOURCE 5 GENE: PSPPH_2088; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEOXYGUANOSINETRIPHOSPHATE TRIPHSPHOHYDROLASE, PSEUDOMONAS SYRINGAE KEYWDS 2 PV. PHASEOLICOLA 1448A, 10395G, PSI-2, NYSGXRC, STRUCTURAL GENOMICS, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 4 STRUCTURAL GENOMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.N.RAO,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 4 03-FEB-21 2PGS 1 AUTHOR JRNL SEQADV LINK REVDAT 3 13-JUL-11 2PGS 1 VERSN REVDAT 2 24-FEB-09 2PGS 1 VERSN REVDAT 1 24-APR-07 2PGS 0 JRNL AUTH K.N.RAO,S.K.BURLEY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE DEOXYGUANOSINETRIPHOSPHATE JRNL TITL 2 TRIPHOSPHOHYDROLASE FROM PSEUDOMONAS SYRINGAE PV. JRNL TITL 3 PHASEOLICOLA 1448A AT 2.35 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 79922.420 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 21262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 619 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3189 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 92 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.034 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 5.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 39.48 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : &_1_PARAMETER_INFILE_5 REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : &_1_TOPOLOGY_INFILE_5 REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES LISTED AS MISSING IN REMARK REMARK 3 465 ARE DUE TO LACK OF ELECTRON DENSITY. RESIDUES WITH MISSING REMARK 3 ATOMS LISTED IN REMARK 470 ARE DUE TO LACK OF ELECTRON DENSITY REMARK 3 FOR SIDE CHAINS AND MODELED AS ALANINES. REMARK 4 REMARK 4 2PGS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : SI III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22333 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 24.50 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, PEG3350, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.56000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.56000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.56000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 79.56000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 79.56000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 79.56000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 85890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLY A 15 REMARK 465 LYS A 16 REMARK 465 THR A 17 REMARK 465 LEU A 18 REMARK 465 HIS A 19 REMARK 465 SER A 20 REMARK 465 PRO A 21 REMARK 465 GLU A 22 REMARK 465 GLU A 23 REMARK 465 LEU A 24 REMARK 465 GLY A 25 REMARK 465 ARG A 26 REMARK 465 SER A 27 REMARK 465 VAL A 54 REMARK 465 SER A 55 REMARK 465 SER A 56 REMARK 465 ASN A 57 REMARK 465 ASP A 58 REMARK 465 HIS A 59 REMARK 465 ILE A 60 REMARK 465 HIS A 192 REMARK 465 ALA A 193 REMARK 465 ASP A 194 REMARK 465 SER A 195 REMARK 465 LEU A 196 REMARK 465 GLY A 197 REMARK 465 TYR A 198 REMARK 465 LYS A 199 REMARK 465 ASP A 276 REMARK 465 ASP A 277 REMARK 465 LEU A 278 REMARK 465 PRO A 279 REMARK 465 GLU A 280 REMARK 465 THR A 281 REMARK 465 TYR A 282 REMARK 465 ARG A 283 REMARK 465 GLN A 284 REMARK 465 LEU A 285 REMARK 465 GLY A 286 REMARK 465 PRO A 287 REMARK 465 GLY A 288 REMARK 465 ASP A 289 REMARK 465 SER A 290 REMARK 465 ARG A 291 REMARK 465 THR A 439 REMARK 465 GLY A 440 REMARK 465 ARG A 441 REMARK 465 SER A 442 REMARK 465 GLY A 443 REMARK 465 GLU A 444 REMARK 465 GLY A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 134 CD NE CZ NH1 NH2 REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 GLU A 257 CG CD OE1 OE2 REMARK 470 TYR A 263 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 292 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 293 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 294 CB CG CD CE NZ REMARK 470 GLN A 318 CG CD OE1 NE2 REMARK 470 ARG A 395 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 396 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 390 C SER A 391 N -0.248 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 134 0.10 -155.26 REMARK 500 ALA A 139 0.55 -65.61 REMARK 500 PHE A 151 115.33 -37.97 REMARK 500 TYR A 166 -101.57 51.09 REMARK 500 PHE A 169 27.10 47.46 REMARK 500 ASP A 170 50.07 -146.87 REMARK 500 LEU A 184 86.73 -65.12 REMARK 500 GLN A 224 70.14 -105.84 REMARK 500 LEU A 225 -80.73 -37.94 REMARK 500 GLN A 228 36.18 -96.31 REMARK 500 ARG A 312 36.73 -81.54 REMARK 500 ALA A 313 -31.44 -141.41 REMARK 500 PRO A 327 90.26 -53.78 REMARK 500 LYS A 393 -48.74 85.56 REMARK 500 GLU A 437 10.64 -60.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10395G RELATED DB: TARGETDB DBREF 2PGS A 3 443 UNP Q48JX0 Q48JX0_PSE14 4 444 SEQADV 2PGS MSE A 1 UNP Q48JX0 CLONING ARTIFACT SEQADV 2PGS SER A 2 UNP Q48JX0 CLONING ARTIFACT SEQADV 2PGS MSE A 79 UNP Q48JX0 MET 80 MODIFIED RESIDUE SEQADV 2PGS MSE A 100 UNP Q48JX0 MET 101 MODIFIED RESIDUE SEQADV 2PGS MSE A 140 UNP Q48JX0 MET 141 MODIFIED RESIDUE SEQADV 2PGS MSE A 239 UNP Q48JX0 MET 240 MODIFIED RESIDUE SEQADV 2PGS MSE A 258 UNP Q48JX0 MET 259 MODIFIED RESIDUE SEQADV 2PGS MSE A 334 UNP Q48JX0 MET 335 MODIFIED RESIDUE SEQADV 2PGS MSE A 348 UNP Q48JX0 MET 349 MODIFIED RESIDUE SEQADV 2PGS MSE A 419 UNP Q48JX0 MET 420 MODIFIED RESIDUE SEQADV 2PGS MSE A 426 UNP Q48JX0 MET 427 MODIFIED RESIDUE SEQADV 2PGS MSE A 434 UNP Q48JX0 MET 435 MODIFIED RESIDUE SEQADV 2PGS MSE A 438 UNP Q48JX0 MET 439 MODIFIED RESIDUE SEQADV 2PGS GLU A 444 UNP Q48JX0 CLONING ARTIFACT SEQADV 2PGS GLY A 445 UNP Q48JX0 CLONING ARTIFACT SEQADV 2PGS HIS A 446 UNP Q48JX0 CLONING ARTIFACT SEQADV 2PGS HIS A 447 UNP Q48JX0 CLONING ARTIFACT SEQADV 2PGS HIS A 448 UNP Q48JX0 CLONING ARTIFACT SEQADV 2PGS HIS A 449 UNP Q48JX0 CLONING ARTIFACT SEQADV 2PGS HIS A 450 UNP Q48JX0 CLONING ARTIFACT SEQADV 2PGS HIS A 451 UNP Q48JX0 CLONING ARTIFACT SEQRES 1 A 451 MSE SER LEU ASP TRP GLN THR LEU LEU ASN ARG GLU ARG SEQRES 2 A 451 LEU GLY LYS THR LEU HIS SER PRO GLU GLU LEU GLY ARG SEQRES 3 A 451 SER PRO PHE HIS LYS ASP HIS ASP ARG ILE ILE PHE SER SEQRES 4 A 451 GLY ALA PHE ARG ARG LEU GLY ARG LYS THR GLN VAL HIS SEQRES 5 A 451 PRO VAL SER SER ASN ASP HIS ILE HIS THR ARG LEU THR SEQRES 6 A 451 HIS SER LEU GLU VAL SER CYS VAL GLY ARG SER LEU GLY SEQRES 7 A 451 MSE ARG VAL GLY GLU THR LEU ARG ALA ALA LEU PRO ASP SEQRES 8 A 451 TRP CYS ASP PRO SER ASP LEU GLY MSE VAL VAL GLN SER SEQRES 9 A 451 ALA CYS LEU ALA HIS ASP ILE GLY ASN PRO PRO PHE GLY SEQRES 10 A 451 HIS SER GLY GLU ASP ALA ILE ARG ASN TRP PHE ASN GLN SEQRES 11 A 451 ALA ALA GLY ARG GLY TRP LEU ASP ALA MSE SER GLU THR SEQRES 12 A 451 GLU ARG ASN ASP PHE LEU ASN PHE GLU GLY ASN ALA GLN SEQRES 13 A 451 GLY PHE ARG VAL LEU THR GLN LEU GLU TYR HIS GLN PHE SEQRES 14 A 451 ASP GLY GLY THR ARG LEU THR TYR ALA THR LEU GLY THR SEQRES 15 A 451 TYR LEU LYS TYR PRO TRP THR ALA ARG HIS ALA ASP SER SEQRES 16 A 451 LEU GLY TYR LYS LYS HIS LYS PHE GLY CYS TYR GLN SER SEQRES 17 A 451 GLU LEU PRO ILE LEU GLU GLN ILE ALA GLY LYS LEU GLY SEQRES 18 A 451 LEU PRO GLN LEU GLU GLU GLN ARG TRP ALA ARG HIS PRO SEQRES 19 A 451 LEU VAL TYR LEU MSE GLU ALA ALA ASP ASP ILE CYS TYR SEQRES 20 A 451 ALA LEU ILE ASP LEU GLU ASP GLY LEU GLU MSE ASP LEU SEQRES 21 A 451 LEU ASP TYR ALA GLU VAL GLU SER LEU LEU LEU GLY LEU SEQRES 22 A 451 VAL GLY ASP ASP LEU PRO GLU THR TYR ARG GLN LEU GLY SEQRES 23 A 451 PRO GLY ASP SER ARG ARG ARG LYS LEU ALA ILE LEU ARG SEQRES 24 A 451 GLY LYS ALA ILE GLU HIS LEU THR ASN ALA ALA ALA ARG SEQRES 25 A 451 ALA PHE VAL GLU GLN GLN ASP ALA LEU LEU ALA GLY THR SEQRES 26 A 451 LEU PRO GLY ASP LEU VAL GLU HIS MSE HIS GLY PRO ALA SEQRES 27 A 451 LYS ARG CYS VAL LEU ASN ALA LYS ASP MSE ALA ARG LYS SEQRES 28 A 451 LYS ILE PHE GLN ASP LYS ARG LYS THR LEU HIS GLU ILE SEQRES 29 A 451 GLY ALA TYR THR THR LEU GLU ILE LEU LEU ASN ALA PHE SEQRES 30 A 451 CYS GLY ALA ALA VAL GLU GLN PHE GLY GLY ARG THR PRO SEQRES 31 A 451 SER PHE LYS HIS ARG ARG ILE LEU ASP LEU LEU GLY ASN SEQRES 32 A 451 SER ALA PRO ASP PRO LYS ALA PRO LEU HIS ALA SER PHE SEQRES 33 A 451 LEU ARG MSE ILE ASP PHE ILE ALA GLY MSE THR ASP SER SEQRES 34 A 451 TYR ALA SER GLU MSE ALA ARG GLU MSE THR GLY ARG SER SEQRES 35 A 451 GLY GLU GLY HIS HIS HIS HIS HIS HIS MODRES 2PGS MSE A 79 MET SELENOMETHIONINE MODRES 2PGS MSE A 100 MET SELENOMETHIONINE MODRES 2PGS MSE A 140 MET SELENOMETHIONINE MODRES 2PGS MSE A 239 MET SELENOMETHIONINE MODRES 2PGS MSE A 258 MET SELENOMETHIONINE MODRES 2PGS MSE A 334 MET SELENOMETHIONINE MODRES 2PGS MSE A 348 MET SELENOMETHIONINE MODRES 2PGS MSE A 419 MET SELENOMETHIONINE MODRES 2PGS MSE A 426 MET SELENOMETHIONINE MODRES 2PGS MSE A 434 MET SELENOMETHIONINE MODRES 2PGS MSE A 438 MET SELENOMETHIONINE HET MSE A 79 8 HET MSE A 100 8 HET MSE A 140 8 HET MSE A 239 8 HET MSE A 258 8 HET MSE A 334 8 HET MSE A 348 8 HET MSE A 419 8 HET MSE A 426 8 HET MSE A 434 8 HET MSE A 438 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 HOH *49(H2 O) HELIX 1 1 PRO A 28 SER A 39 1 12 HELIX 2 2 SER A 39 ARG A 44 1 6 HELIX 3 3 LEU A 45 LYS A 48 5 4 HELIX 4 4 THR A 62 LEU A 85 1 24 HELIX 5 5 ARG A 86 LEU A 89 5 4 HELIX 6 6 ASP A 94 HIS A 109 1 16 HELIX 7 7 PHE A 116 GLY A 133 1 18 HELIX 8 8 SER A 141 ASN A 150 1 10 HELIX 9 9 GLU A 152 GLN A 163 1 12 HELIX 10 10 THR A 176 LEU A 184 1 9 HELIX 11 11 GLU A 209 GLY A 221 1 13 HELIX 12 12 LEU A 235 GLU A 257 1 23 HELIX 13 13 ASP A 262 GLY A 272 1 11 HELIX 14 14 ARG A 292 VAL A 315 1 24 HELIX 15 15 GLN A 318 ALA A 323 1 6 HELIX 16 16 ASP A 329 MSE A 334 5 6 HELIX 17 17 HIS A 335 ILE A 353 1 19 HELIX 18 18 ASP A 356 GLN A 384 1 29 HELIX 19 19 PHE A 385 ARG A 388 5 4 HELIX 20 20 LYS A 393 LEU A 400 1 8 HELIX 21 21 PRO A 411 GLY A 425 1 15 HELIX 22 22 THR A 427 GLU A 437 1 11 LINK C GLY A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N ARG A 80 1555 1555 1.33 LINK C GLY A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N VAL A 101 1555 1555 1.33 LINK C ALA A 139 N MSE A 140 1555 1555 1.33 LINK C MSE A 140 N SER A 141 1555 1555 1.33 LINK C LEU A 238 N MSE A 239 1555 1555 1.34 LINK C MSE A 239 N GLU A 240 1555 1555 1.33 LINK C GLU A 257 N MSE A 258 1555 1555 1.33 LINK C MSE A 258 N ASP A 259 1555 1555 1.33 LINK C HIS A 333 N MSE A 334 1555 1555 1.32 LINK C MSE A 334 N HIS A 335 1555 1555 1.33 LINK C ASP A 347 N MSE A 348 1555 1555 1.33 LINK C MSE A 348 N ALA A 349 1555 1555 1.33 LINK C ARG A 418 N MSE A 419 1555 1555 1.33 LINK C MSE A 419 N ILE A 420 1555 1555 1.33 LINK C GLY A 425 N MSE A 426 1555 1555 1.33 LINK C MSE A 426 N THR A 427 1555 1555 1.33 LINK C GLU A 433 N MSE A 434 1555 1555 1.33 LINK C MSE A 434 N ALA A 435 1555 1555 1.33 LINK C GLU A 437 N MSE A 438 1555 1555 1.33 CRYST1 103.730 103.730 159.120 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009640 0.005566 0.000000 0.00000 SCALE2 0.000000 0.011132 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006285 0.00000