data_2PHE # _entry.id 2PHE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PHE pdb_00002phe 10.2210/pdb2phe/pdb RCSB RCSB042380 ? ? WWPDB D_1000042380 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type BMRB 6099 'Backbone chemical shift assignments for the activation domain of the transcriptional activator VP16' unspecified PDB 1PCF 'Crystal structure of the human transcriptional coactivator PC4 C-terminal core domain' unspecified PDB 2phg . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PHE _pdbx_database_status.recvd_initial_deposition_date 2007-04-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jonker, H.R.A.' 1 'Wechselberger, R.W.' 2 'Boelens, R.' 3 'Folkers, G.E.' 4 'Kaptein, R.' 5 # _citation.id primary _citation.title 'Structural Properties of the Promiscuous VP16 Activation Domain' _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 827 _citation.page_last 839 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15654739 _citation.pdbx_database_id_DOI 10.1021/bi0482912 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jonker, H.R.A.' 1 ? primary 'Wechselberger, R.W.' 2 ? primary 'Boelens, R.' 3 ? primary 'Folkers, G.E.' 4 ? primary 'Kaptein, R.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TRANSCRIPTIONAL COACTIVATOR PC4' 7784.024 2 ? N61A 'c-terminal core domain' ? 2 polymer man 'Alpha trans-inducing protein' 2906.115 1 ? ? 'part of activation domain' ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'SUB1 homolog, Positive cofactor 4, P15, p14' 2 'Vmw65, ICP25, VP16 protein, Alpha- TIF' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no AMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL AMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL A,B ? 2 'polypeptide(L)' no no YGALDMADFEFEQMFTDALGIDEYGG YGALDMADFEFEQMFTDALGIDEYGG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MET n 1 3 PHE n 1 4 GLN n 1 5 ILE n 1 6 GLY n 1 7 LYS n 1 8 MET n 1 9 ARG n 1 10 TYR n 1 11 VAL n 1 12 SER n 1 13 VAL n 1 14 ARG n 1 15 ASP n 1 16 PHE n 1 17 LYS n 1 18 GLY n 1 19 LYS n 1 20 VAL n 1 21 LEU n 1 22 ILE n 1 23 ASP n 1 24 ILE n 1 25 ARG n 1 26 GLU n 1 27 TYR n 1 28 TRP n 1 29 MET n 1 30 ASP n 1 31 PRO n 1 32 GLU n 1 33 GLY n 1 34 GLU n 1 35 MET n 1 36 LYS n 1 37 PRO n 1 38 GLY n 1 39 ARG n 1 40 LYS n 1 41 GLY n 1 42 ILE n 1 43 SER n 1 44 LEU n 1 45 ASN n 1 46 PRO n 1 47 GLU n 1 48 GLN n 1 49 TRP n 1 50 SER n 1 51 GLN n 1 52 LEU n 1 53 LYS n 1 54 GLU n 1 55 GLN n 1 56 ILE n 1 57 SER n 1 58 ASP n 1 59 ILE n 1 60 ASP n 1 61 ASP n 1 62 ALA n 1 63 VAL n 1 64 ARG n 1 65 LYS n 1 66 LEU n 2 1 TYR n 2 2 GLY n 2 3 ALA n 2 4 LEU n 2 5 ASP n 2 6 MET n 2 7 ALA n 2 8 ASP n 2 9 PHE n 2 10 GLU n 2 11 PHE n 2 12 GLU n 2 13 GLN n 2 14 MET n 2 15 PHE n 2 16 THR n 2 17 ASP n 2 18 ALA n 2 19 LEU n 2 20 GLY n 2 21 ILE n 2 22 ASP n 2 23 GLU n 2 24 TYR n 2 25 GLY n 2 26 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human Homo 'SUB1, PC4, RPO2TC1' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21' 511693 Escherichia ? ? 'Escherichia coli' ? ? BL21 ? ? ? ? ? ? ? Plasmid ? ? ? pET11a ? ? 2 1 sample ? ? ? ? Simplexvirus UL48 'Human herpesvirus 1' 17 ? ? ? ? 'Herpes simplex virus (type 1 / strain 17)' 10299 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? 'BL21(DE3)pLysS' ? ? ? ? ? ? ? Plasmid ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TCP4_HUMAN P53999 1 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 63 ? 2 UNP ATIN_HHV11 P06492 2 YGALDMADFEFEQMFTDALGIDEYGG 465 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2PHE A 2 ? 66 ? P53999 63 ? 127 ? 62 126 2 1 2PHE B 2 ? 66 ? P53999 63 ? 127 ? 62 126 3 2 2PHE C 1 ? 26 ? P06492 465 ? 490 ? 465 490 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2PHE ALA A 1 ? UNP P53999 ? ? 'cloning artifact' 61 1 2 2PHE ALA B 1 ? UNP P53999 ? ? 'cloning artifact' 61 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 15N-HSQCs 1 2 2 13C-HNCACB 2 3 1 13C-HNCO 1 4 2 15N-NOESY-HSQC 2 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 1 5.6 '100-450 mM' atm K 2 305 1 5.6 '100-450 mM' atm K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '0.2 mM VP16ad U-15N or U15N,13C, 0-0.5 mM PC4 or PC4ctd, 50 or 400 mM KCl, 50 mM phosphate buffer pH 5.6, 2 M D6-Glycine, H2O' H2O 2 '0.2 mM PC4 or PC4ctd U-15N, 0-0.5 mM VP16ad, 50 or 400 mM KCl, 50 mM phosphate buffer pH 5.6, 2 M D6-Glycine, H2O' H2O # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 AVANCE Bruker 500 ? 2 AVANCE Bruker 600 ? 3 AVANCE Bruker 750 ? 4 INOVA Varian 500 ? 5 INOVA Varian 750 ? # _pdbx_nmr_refine.entry_id 2PHE _pdbx_nmr_refine.method 'The model was calculated using HADDOCK' _pdbx_nmr_refine.details 'The structure represents a docking model. The starting structure for PC4 was taken from the PDB entry 1PCF.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2PHE _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'Top-ranked ensemble, according to the average interaction energy and buried surface area' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2PHE _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.x 'Bruker Biospin' 1 collection VNMR 1 'Varian Inc.' 2 processing NMRPipe 2.4 'Delaglio et al.' 3 'data analysis' Sparky 3.110 'Goddard et al.' 4 'structure solution' CNS 1.1 'Brunger et al.' 5 refinement HADDOCK 1.2 'Dominguez et al.' 6 # _exptl.entry_id 2PHE _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 2PHE _struct.title 'Model for VP16 binding to PC4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PHE _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'PC4, VP16, transcription, cofactor, activator' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 45 ? ARG A 64 ? ASN A 105 ARG A 124 1 ? 20 HELX_P HELX_P2 2 ASN B 45 ? ARG B 64 ? ASN B 105 ARG B 124 1 ? 20 HELX_P HELX_P3 3 ASP C 5 ? GLU C 10 ? ASP C 469 GLU C 474 1 ? 6 HELX_P HELX_P4 4 GLU C 10 ? THR C 16 ? GLU C 474 THR C 480 1 ? 7 HELX_P HELX_P5 5 ILE C 21 ? GLY C 25 ? ILE C 485 GLY C 489 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 2 ? GLY A 6 ? MET A 62 GLY A 66 A 2 ARG A 9 ? PHE A 16 ? ARG A 69 PHE A 76 A 3 LYS A 19 ? MET A 29 ? LYS A 79 MET A 89 A 4 MET A 35 ? SER A 43 ? MET A 95 SER A 103 B 1 MET B 2 ? GLN B 4 ? MET B 62 GLN B 64 B 2 ARG B 9 ? ASP B 15 ? ARG B 69 ASP B 75 B 3 VAL B 20 ? MET B 29 ? VAL B 80 MET B 89 B 4 MET B 35 ? LEU B 44 ? MET B 95 LEU B 104 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 3 ? N PHE A 63 O VAL A 11 ? O VAL A 71 A 2 3 N ARG A 14 ? N ARG A 74 O LEU A 21 ? O LEU A 81 A 3 4 N TRP A 28 ? N TRP A 88 O LYS A 36 ? O LYS A 96 B 1 2 N PHE B 3 ? N PHE B 63 O VAL B 11 ? O VAL B 71 B 2 3 N ARG B 14 ? N ARG B 74 O LEU B 21 ? O LEU B 81 B 3 4 N TRP B 28 ? N TRP B 88 O LYS B 36 ? O LYS B 96 # _database_PDB_matrix.entry_id 2PHE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2PHE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 61 61 ALA ALA A . n A 1 2 MET 2 62 62 MET MET A . n A 1 3 PHE 3 63 63 PHE PHE A . n A 1 4 GLN 4 64 64 GLN GLN A . n A 1 5 ILE 5 65 65 ILE ILE A . n A 1 6 GLY 6 66 66 GLY GLY A . n A 1 7 LYS 7 67 67 LYS LYS A . n A 1 8 MET 8 68 68 MET MET A . n A 1 9 ARG 9 69 69 ARG ARG A . n A 1 10 TYR 10 70 70 TYR TYR A . n A 1 11 VAL 11 71 71 VAL VAL A . n A 1 12 SER 12 72 72 SER SER A . n A 1 13 VAL 13 73 73 VAL VAL A . n A 1 14 ARG 14 74 74 ARG ARG A . n A 1 15 ASP 15 75 75 ASP ASP A . n A 1 16 PHE 16 76 76 PHE PHE A . n A 1 17 LYS 17 77 77 LYS LYS A . n A 1 18 GLY 18 78 78 GLY GLY A . n A 1 19 LYS 19 79 79 LYS LYS A . n A 1 20 VAL 20 80 80 VAL VAL A . n A 1 21 LEU 21 81 81 LEU LEU A . n A 1 22 ILE 22 82 82 ILE ILE A . n A 1 23 ASP 23 83 83 ASP ASP A . n A 1 24 ILE 24 84 84 ILE ILE A . n A 1 25 ARG 25 85 85 ARG ARG A . n A 1 26 GLU 26 86 86 GLU GLU A . n A 1 27 TYR 27 87 87 TYR TYR A . n A 1 28 TRP 28 88 88 TRP TRP A . n A 1 29 MET 29 89 89 MET MET A . n A 1 30 ASP 30 90 90 ASP ASP A . n A 1 31 PRO 31 91 91 PRO PRO A . n A 1 32 GLU 32 92 92 GLU GLU A . n A 1 33 GLY 33 93 93 GLY GLY A . n A 1 34 GLU 34 94 94 GLU GLU A . n A 1 35 MET 35 95 95 MET MET A . n A 1 36 LYS 36 96 96 LYS LYS A . n A 1 37 PRO 37 97 97 PRO PRO A . n A 1 38 GLY 38 98 98 GLY GLY A . n A 1 39 ARG 39 99 99 ARG ARG A . n A 1 40 LYS 40 100 100 LYS LYS A . n A 1 41 GLY 41 101 101 GLY GLY A . n A 1 42 ILE 42 102 102 ILE ILE A . n A 1 43 SER 43 103 103 SER SER A . n A 1 44 LEU 44 104 104 LEU LEU A . n A 1 45 ASN 45 105 105 ASN ASN A . n A 1 46 PRO 46 106 106 PRO PRO A . n A 1 47 GLU 47 107 107 GLU GLU A . n A 1 48 GLN 48 108 108 GLN GLN A . n A 1 49 TRP 49 109 109 TRP TRP A . n A 1 50 SER 50 110 110 SER SER A . n A 1 51 GLN 51 111 111 GLN GLN A . n A 1 52 LEU 52 112 112 LEU LEU A . n A 1 53 LYS 53 113 113 LYS LYS A . n A 1 54 GLU 54 114 114 GLU GLU A . n A 1 55 GLN 55 115 115 GLN GLN A . n A 1 56 ILE 56 116 116 ILE ILE A . n A 1 57 SER 57 117 117 SER SER A . n A 1 58 ASP 58 118 118 ASP ASP A . n A 1 59 ILE 59 119 119 ILE ILE A . n A 1 60 ASP 60 120 120 ASP ASP A . n A 1 61 ASP 61 121 121 ASP ASP A . n A 1 62 ALA 62 122 122 ALA ALA A . n A 1 63 VAL 63 123 123 VAL VAL A . n A 1 64 ARG 64 124 124 ARG ARG A . n A 1 65 LYS 65 125 125 LYS LYS A . n A 1 66 LEU 66 126 126 LEU LEU A . n B 1 1 ALA 1 61 61 ALA ALA B . n B 1 2 MET 2 62 62 MET MET B . n B 1 3 PHE 3 63 63 PHE PHE B . n B 1 4 GLN 4 64 64 GLN GLN B . n B 1 5 ILE 5 65 65 ILE ILE B . n B 1 6 GLY 6 66 66 GLY GLY B . n B 1 7 LYS 7 67 67 LYS LYS B . n B 1 8 MET 8 68 68 MET MET B . n B 1 9 ARG 9 69 69 ARG ARG B . n B 1 10 TYR 10 70 70 TYR TYR B . n B 1 11 VAL 11 71 71 VAL VAL B . n B 1 12 SER 12 72 72 SER SER B . n B 1 13 VAL 13 73 73 VAL VAL B . n B 1 14 ARG 14 74 74 ARG ARG B . n B 1 15 ASP 15 75 75 ASP ASP B . n B 1 16 PHE 16 76 76 PHE PHE B . n B 1 17 LYS 17 77 77 LYS LYS B . n B 1 18 GLY 18 78 78 GLY GLY B . n B 1 19 LYS 19 79 79 LYS LYS B . n B 1 20 VAL 20 80 80 VAL VAL B . n B 1 21 LEU 21 81 81 LEU LEU B . n B 1 22 ILE 22 82 82 ILE ILE B . n B 1 23 ASP 23 83 83 ASP ASP B . n B 1 24 ILE 24 84 84 ILE ILE B . n B 1 25 ARG 25 85 85 ARG ARG B . n B 1 26 GLU 26 86 86 GLU GLU B . n B 1 27 TYR 27 87 87 TYR TYR B . n B 1 28 TRP 28 88 88 TRP TRP B . n B 1 29 MET 29 89 89 MET MET B . n B 1 30 ASP 30 90 90 ASP ASP B . n B 1 31 PRO 31 91 91 PRO PRO B . n B 1 32 GLU 32 92 92 GLU GLU B . n B 1 33 GLY 33 93 93 GLY GLY B . n B 1 34 GLU 34 94 94 GLU GLU B . n B 1 35 MET 35 95 95 MET MET B . n B 1 36 LYS 36 96 96 LYS LYS B . n B 1 37 PRO 37 97 97 PRO PRO B . n B 1 38 GLY 38 98 98 GLY GLY B . n B 1 39 ARG 39 99 99 ARG ARG B . n B 1 40 LYS 40 100 100 LYS LYS B . n B 1 41 GLY 41 101 101 GLY GLY B . n B 1 42 ILE 42 102 102 ILE ILE B . n B 1 43 SER 43 103 103 SER SER B . n B 1 44 LEU 44 104 104 LEU LEU B . n B 1 45 ASN 45 105 105 ASN ASN B . n B 1 46 PRO 46 106 106 PRO PRO B . n B 1 47 GLU 47 107 107 GLU GLU B . n B 1 48 GLN 48 108 108 GLN GLN B . n B 1 49 TRP 49 109 109 TRP TRP B . n B 1 50 SER 50 110 110 SER SER B . n B 1 51 GLN 51 111 111 GLN GLN B . n B 1 52 LEU 52 112 112 LEU LEU B . n B 1 53 LYS 53 113 113 LYS LYS B . n B 1 54 GLU 54 114 114 GLU GLU B . n B 1 55 GLN 55 115 115 GLN GLN B . n B 1 56 ILE 56 116 116 ILE ILE B . n B 1 57 SER 57 117 117 SER SER B . n B 1 58 ASP 58 118 118 ASP ASP B . n B 1 59 ILE 59 119 119 ILE ILE B . n B 1 60 ASP 60 120 120 ASP ASP B . n B 1 61 ASP 61 121 121 ASP ASP B . n B 1 62 ALA 62 122 122 ALA ALA B . n B 1 63 VAL 63 123 123 VAL VAL B . n B 1 64 ARG 64 124 124 ARG ARG B . n B 1 65 LYS 65 125 125 LYS LYS B . n B 1 66 LEU 66 126 126 LEU LEU B . n C 2 1 TYR 1 465 465 TYR TYR C . n C 2 2 GLY 2 466 466 GLY GLY C . n C 2 3 ALA 3 467 467 ALA ALA C . n C 2 4 LEU 4 468 468 LEU LEU C . n C 2 5 ASP 5 469 469 ASP ASP C . n C 2 6 MET 6 470 470 MET MET C . n C 2 7 ALA 7 471 471 ALA ALA C . n C 2 8 ASP 8 472 472 ASP ASP C . n C 2 9 PHE 9 473 473 PHE PHE C . n C 2 10 GLU 10 474 474 GLU GLU C . n C 2 11 PHE 11 475 475 PHE PHE C . n C 2 12 GLU 12 476 476 GLU GLU C . n C 2 13 GLN 13 477 477 GLN GLN C . n C 2 14 MET 14 478 478 MET MET C . n C 2 15 PHE 15 479 479 PHE PHE C . n C 2 16 THR 16 480 480 THR THR C . n C 2 17 ASP 17 481 481 ASP ASP C . n C 2 18 ALA 18 482 482 ALA ALA C . n C 2 19 LEU 19 483 483 LEU LEU C . n C 2 20 GLY 20 484 484 GLY GLY C . n C 2 21 ILE 21 485 485 ILE ILE C . n C 2 22 ASP 22 486 486 ASP ASP C . n C 2 23 GLU 23 487 487 GLU GLU C . n C 2 24 TYR 24 488 488 TYR TYR C . n C 2 25 GLY 25 489 489 GLY GLY C . n C 2 26 GLY 26 490 490 GLY GLY C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-24 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 77 ? ? 61.80 -86.75 2 1 ALA C 471 ? ? -85.38 40.50 3 1 ASP C 472 ? ? -133.28 -41.72 4 1 ASP C 481 ? ? -129.64 -58.11 5 1 ILE C 485 ? ? -174.90 -26.86 6 2 ASP C 469 ? ? -147.21 -55.94 7 2 PHE C 479 ? ? -91.76 -98.82 8 3 LYS A 79 ? ? -100.83 -167.36 9 3 LEU A 81 ? ? -118.53 78.94 10 3 MET C 478 ? ? -176.80 -44.86 11 3 ALA C 482 ? ? -79.55 28.72 12 3 LEU C 483 ? ? -171.76 -50.83 13 4 LYS B 100 ? ? -100.40 -146.22 14 5 MET B 68 ? ? 78.08 -0.59 15 5 LEU C 483 ? ? -81.38 -78.08 16 6 TRP A 88 ? ? -99.19 -157.39 17 6 LYS B 100 ? ? -117.79 -160.35 18 6 ASP C 469 ? ? -139.59 -114.97 19 7 PHE B 76 ? ? -108.80 78.00 20 7 LYS B 125 ? ? -107.79 78.09 21 7 GLU C 476 ? ? -81.62 49.86 22 7 GLN C 477 ? ? -165.05 -46.78 23 8 PHE A 76 ? ? -161.16 119.34 24 8 PRO A 91 ? ? -78.39 32.00 25 8 LYS A 100 ? ? -167.29 108.38 26 8 MET B 68 ? ? 74.93 -50.76 27 9 MET B 68 ? ? 76.01 -12.80 28 9 ARG B 99 ? ? -82.26 47.97 29 9 LYS B 100 ? ? -161.78 104.87 30 9 ILE C 485 ? ? -151.13 -16.05 31 10 ALA C 467 ? ? -77.25 23.84 32 10 LEU C 468 ? ? -141.39 -53.91 33 10 MET C 478 ? ? -145.01 -4.12 34 10 PHE C 479 ? ? -71.48 -83.27 35 10 ILE C 485 ? ? -168.47 -31.82 36 10 TYR C 488 ? ? -161.55 -52.73 #