HEADER HYDROLASE 11-APR-07 2PHJ OBSLTE 29-SEP-09 2PHJ 2WQK TITLE CRYSTAL STRUCTURE OF SURE PROTEIN FROM AQUIFEX AEOLICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-NUCLEOTIDASE SURE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEOSIDE 5'-MONOPHOSPHATE PHOSPHOHYDROLASE; COMPND 5 EC: 3.1.3.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS VF5; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: SURE, AQ_832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS SURE PROTEIN, PUTATIVE ACID PHOSPHATASE, STRUCTURAL KEYWDS 2 GENOMICS, 3-D STRUCTURE, MIXED ALPHA/BETA PROTEIN, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 5 RSGI, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.V.ANTONYUK,M.J.ELLIS,R.W.STRANGE,S.S.HASNAIN,Y.BESSHO, AUTHOR 2 S.KURAMITSU,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI) REVDAT 3 29-SEP-09 2PHJ 1 OBSLTE REVDAT 2 24-FEB-09 2PHJ 1 VERSN REVDAT 1 16-OCT-07 2PHJ 0 JRNL AUTH S.V.ANTONYUK,M.J.ELLIS,R.W.STRANGE,S.S.HASNAIN, JRNL AUTH 2 Y.BESSHO,S.KURAMITSU,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF SURE PROTEIN FROM AQUIFEX JRNL TITL 2 AEOLICUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 86861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4577 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4163 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4116 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 611 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.110 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4244 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2942 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5795 ; 1.620 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7192 ; 1.010 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 548 ; 5.991 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;31.396 ;23.869 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 743 ;11.961 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.826 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 637 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4751 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 877 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 811 ; 0.243 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3078 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2061 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2147 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 397 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.076 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 11 ; 0.058 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.350 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.229 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.063 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2561 ; 1.621 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1046 ; 0.786 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4188 ; 2.458 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1739 ; 3.473 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1583 ; 4.689 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7493 ; 3.490 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 616 ; 8.079 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7068 ; 4.351 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2PHJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-07. REMARK 100 THE RCSB ID CODE IS RCSB042383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.19600 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91484 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : 0.19300 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1J9L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M NACL, 0.1 M ACETATE PH 4.5, REMARK 280 0.2 M LI SULFATE, OIL (TERA), MICROBATCH UNDER OIL, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 159.46267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.73133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.73133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 159.46267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 79.73133 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 250 REMARK 465 PRO A 251 REMARK 465 MET B 1 REMARK 465 SER B 250 REMARK 465 PRO B 251 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 188 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 42 -165.33 -124.91 REMARK 500 VAL B 42 -163.90 -126.42 REMARK 500 VAL B 79 -60.39 -96.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 281 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH B 393 DISTANCE = 5.56 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 254 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 SER A 40 OG 82.0 REMARK 620 3 ASN A 94 OD1 92.2 167.9 REMARK 620 4 SO4 A 252 O1 176.9 99.8 86.5 REMARK 620 5 SO4 A 252 O2 127.5 88.5 86.6 55.2 REMARK 620 6 HOH A 299 O 98.0 90.9 100.5 79.5 133.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 255 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 SER B 40 OG 81.9 REMARK 620 3 ASN B 94 OD1 92.8 168.2 REMARK 620 4 SO4 B 252 O2 176.6 99.8 86.0 REMARK 620 5 SO4 B 252 O3 128.3 87.6 87.5 54.9 REMARK 620 6 HOH B 305 O 97.8 88.9 102.3 79.4 132.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 253 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 25 O REMARK 620 2 GLY B 28 O 85.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 252 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 253 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 254 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 252 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 253 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 255 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 255 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AAE001000832.1 RELATED DB: TARGETDB DBREF 2PHJ A 1 251 UNP O67004 SURE_AQUAE 1 251 DBREF 2PHJ B 1 251 UNP O67004 SURE_AQUAE 1 251 SEQRES 1 A 251 MET PRO THR PHE LEU LEU VAL ASN ASP ASP GLY TYR PHE SEQRES 2 A 251 SER PRO GLY ILE ASN ALA LEU ARG GLU ALA LEU LYS SER SEQRES 3 A 251 LEU GLY ARG VAL VAL VAL VAL ALA PRO ASP ARG ASN LEU SEQRES 4 A 251 SER GLY VAL GLY HIS SER LEU THR PHE THR GLU PRO LEU SEQRES 5 A 251 LYS MET ARG LYS ILE ASP THR ASP PHE TYR THR VAL ILE SEQRES 6 A 251 ASP GLY THR PRO ALA ASP CYS VAL HIS LEU GLY TYR ARG SEQRES 7 A 251 VAL ILE LEU GLU GLU LYS LYS PRO ASP LEU VAL LEU SER SEQRES 8 A 251 GLY ILE ASN GLU GLY PRO ASN LEU GLY GLU ASP ILE THR SEQRES 9 A 251 TYR SER GLY THR VAL SER GLY ALA MET GLU GLY ARG ILE SEQRES 10 A 251 LEU GLY ILE PRO SER ILE ALA PHE SER ALA PHE GLY ARG SEQRES 11 A 251 GLU ASN ILE MET PHE GLU GLU ILE ALA LYS VAL CYS VAL SEQRES 12 A 251 ASP ILE VAL LYS LYS VAL LEU ASN GLU GLY ILE PRO GLU SEQRES 13 A 251 ASP THR TYR LEU ASN VAL ASN ILE PRO ASN LEU ARG TYR SEQRES 14 A 251 GLU GLU ILE LYS GLY ILE LYS VAL THR ARG GLN GLY LYS SEQRES 15 A 251 ARG ALA TYR LYS GLU ARG VAL PHE LYS TYR ILE ASP PRO SEQRES 16 A 251 TYR GLY LYS PRO PHE TYR TRP ILE ALA ALA GLU GLU PHE SEQRES 17 A 251 GLY TRP HIS ALA GLU GLU GLY THR ASP TYR TRP ALA VAL SEQRES 18 A 251 LEU ASN GLY TYR VAL SER VAL THR PRO LEU HIS LEU ASP SEQRES 19 A 251 LEU THR ASN TYR LYS VAL MET LYS SER ILE LYS TYR LEU SEQRES 20 A 251 GLU ASP SER PRO SEQRES 1 B 251 MET PRO THR PHE LEU LEU VAL ASN ASP ASP GLY TYR PHE SEQRES 2 B 251 SER PRO GLY ILE ASN ALA LEU ARG GLU ALA LEU LYS SER SEQRES 3 B 251 LEU GLY ARG VAL VAL VAL VAL ALA PRO ASP ARG ASN LEU SEQRES 4 B 251 SER GLY VAL GLY HIS SER LEU THR PHE THR GLU PRO LEU SEQRES 5 B 251 LYS MET ARG LYS ILE ASP THR ASP PHE TYR THR VAL ILE SEQRES 6 B 251 ASP GLY THR PRO ALA ASP CYS VAL HIS LEU GLY TYR ARG SEQRES 7 B 251 VAL ILE LEU GLU GLU LYS LYS PRO ASP LEU VAL LEU SER SEQRES 8 B 251 GLY ILE ASN GLU GLY PRO ASN LEU GLY GLU ASP ILE THR SEQRES 9 B 251 TYR SER GLY THR VAL SER GLY ALA MET GLU GLY ARG ILE SEQRES 10 B 251 LEU GLY ILE PRO SER ILE ALA PHE SER ALA PHE GLY ARG SEQRES 11 B 251 GLU ASN ILE MET PHE GLU GLU ILE ALA LYS VAL CYS VAL SEQRES 12 B 251 ASP ILE VAL LYS LYS VAL LEU ASN GLU GLY ILE PRO GLU SEQRES 13 B 251 ASP THR TYR LEU ASN VAL ASN ILE PRO ASN LEU ARG TYR SEQRES 14 B 251 GLU GLU ILE LYS GLY ILE LYS VAL THR ARG GLN GLY LYS SEQRES 15 B 251 ARG ALA TYR LYS GLU ARG VAL PHE LYS TYR ILE ASP PRO SEQRES 16 B 251 TYR GLY LYS PRO PHE TYR TRP ILE ALA ALA GLU GLU PHE SEQRES 17 B 251 GLY TRP HIS ALA GLU GLU GLY THR ASP TYR TRP ALA VAL SEQRES 18 B 251 LEU ASN GLY TYR VAL SER VAL THR PRO LEU HIS LEU ASP SEQRES 19 B 251 LEU THR ASN TYR LYS VAL MET LYS SER ILE LYS TYR LEU SEQRES 20 B 251 GLU ASP SER PRO HET SO4 A 252 5 HET NA A 253 1 HET NA A 254 1 HET SO4 B 252 5 HET NA B 253 1 HET NA A 255 1 HET NA B 255 1 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 NA 5(NA 1+) FORMUL 10 HOH *611(H2 O) HELIX 1 1 SER A 14 LYS A 25 1 12 HELIX 2 2 THR A 68 VAL A 79 1 12 HELIX 3 3 LEU A 99 TYR A 105 5 7 HELIX 4 4 SER A 106 LEU A 118 1 13 HELIX 5 5 MET A 134 GLY A 153 1 20 HELIX 6 6 ARG A 168 ILE A 172 5 5 HELIX 7 7 THR A 216 ASN A 223 1 8 HELIX 8 8 ASN A 237 ASP A 249 5 13 HELIX 9 9 SER B 14 LYS B 25 1 12 HELIX 10 10 THR B 68 VAL B 79 1 12 HELIX 11 11 LEU B 99 TYR B 105 5 7 HELIX 12 12 SER B 106 LEU B 118 1 13 HELIX 13 13 MET B 134 GLY B 153 1 20 HELIX 14 14 ARG B 168 ILE B 172 5 5 HELIX 15 15 THR B 216 ASN B 223 1 8 HELIX 16 16 ASN B 237 ASP B 249 5 13 SHEET 1 A11 GLY A 174 VAL A 177 0 SHEET 2 A11 TYR A 225 HIS A 232 1 O VAL A 226 N LYS A 176 SHEET 3 A11 THR A 158 PRO A 165 -1 N TYR A 159 O LEU A 231 SHEET 4 A11 SER A 122 PHE A 128 1 N PHE A 128 O ILE A 164 SHEET 5 A11 LEU A 88 ASN A 94 1 N SER A 91 O PHE A 125 SHEET 6 A11 THR A 3 VAL A 7 1 N LEU A 5 O LEU A 90 SHEET 7 A11 ARG A 29 PRO A 35 1 O VAL A 31 N PHE A 4 SHEET 8 A11 PHE A 61 VAL A 64 1 O TYR A 62 N VAL A 32 SHEET 9 A11 LEU A 52 ASP A 58 -1 N ILE A 57 O PHE A 61 SHEET 10 A11 PRO B 199 GLU B 206 -1 O TYR B 201 N LEU A 52 SHEET 11 A11 LYS B 186 ILE B 193 -1 N ARG B 188 O ALA B 204 SHEET 1 B11 LYS A 186 ILE A 193 0 SHEET 2 B11 PRO A 199 GLU A 206 -1 O ALA A 204 N ARG A 188 SHEET 3 B11 LEU B 52 ASP B 58 -1 O LEU B 52 N TYR A 201 SHEET 4 B11 PHE B 61 VAL B 64 -1 O PHE B 61 N ILE B 57 SHEET 5 B11 ARG B 29 PRO B 35 1 N VAL B 32 O TYR B 62 SHEET 6 B11 THR B 3 VAL B 7 1 N PHE B 4 O VAL B 31 SHEET 7 B11 LEU B 88 ASN B 94 1 O LEU B 90 N LEU B 5 SHEET 8 B11 SER B 122 PHE B 128 1 O PHE B 125 N SER B 91 SHEET 9 B11 THR B 158 PRO B 165 1 O ILE B 164 N PHE B 128 SHEET 10 B11 TYR B 225 HIS B 232 -1 O LEU B 231 N TYR B 159 SHEET 11 B11 GLY B 174 VAL B 177 1 N LYS B 176 O VAL B 226 LINK OD1 ASP A 10 NA NA A 254 1555 1555 2.34 LINK OG SER A 40 NA NA A 254 1555 1555 2.36 LINK OD1 ASN A 94 NA NA A 254 1555 1555 2.33 LINK OG SER A 243 NA NA A 253 1555 1555 2.87 LINK OD1 ASP B 10 NA NA B 255 1555 1555 2.36 LINK O LYS B 25 NA NA B 253 1555 1555 2.32 LINK O GLY B 28 NA NA B 253 1555 1555 2.36 LINK OG SER B 40 NA NA B 255 1555 1555 2.37 LINK OD1 ASN B 94 NA NA B 255 1555 1555 2.33 LINK O1 SO4 A 252 NA NA A 254 1555 1555 2.71 LINK O2 SO4 A 252 NA NA A 254 1555 1555 2.37 LINK NA NA A 254 O HOH A 299 1555 1555 2.46 LINK O2 SO4 B 252 NA NA B 255 1555 1555 2.71 LINK O3 SO4 B 252 NA NA B 255 1555 1555 2.40 LINK NA NA A 255 O HOH A 266 1555 1555 2.81 LINK NA NA B 255 O HOH B 305 1555 1555 2.40 CISPEP 1 GLY A 92 ILE A 93 0 -4.65 CISPEP 2 GLY B 92 ILE B 93 0 -3.63 SITE 1 AC1 10 ASP A 9 SER A 40 ASN A 94 ASN A 98 SITE 2 AC1 10 SER A 106 GLY A 107 THR A 108 NA A 254 SITE 3 AC1 10 HOH A 476 HOH A 505 SITE 1 AC2 3 LYS A 239 LYS A 242 SER A 243 SITE 1 AC3 5 ASP A 10 SER A 40 ASN A 94 SO4 A 252 SITE 2 AC3 5 HOH A 299 SITE 1 AC4 11 ASP B 9 SER B 40 ASN B 94 ASN B 98 SITE 2 AC4 11 SER B 106 GLY B 107 THR B 108 NA B 255 SITE 3 AC4 11 HOH B 453 HOH B 468 HOH B 506 SITE 1 AC5 5 LYS A 25 GLY A 28 NA A 255 LYS B 25 SITE 2 AC5 5 GLY B 28 SITE 1 AC6 4 LYS A 25 HOH A 266 NA B 253 HOH B 267 SITE 1 AC7 5 ASP B 10 SER B 40 ASN B 94 SO4 B 252 SITE 2 AC7 5 HOH B 305 CRYST1 65.006 65.006 239.194 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015383 0.008881 0.000000 0.00000 SCALE2 0.000000 0.017763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004181 0.00000