HEADER COMPLEX (TRANSFERASE/PEPTIDE) 18-JUN-98 2PHK TITLE THE CRYSTAL STRUCTURE OF A PHOSPHORYLASE KINASE PEPTIDE SUBSTRATE TITLE 2 COMPLEX: KINASE SUBSTRATE RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORYLASE KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 EC: 2.7.1.38; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MC-PEPTIDE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 STRAIN: NEW ZEALAND WHITE; SOURCE 6 CELL_LINE: BL21; SOURCE 7 ORGAN: SKELETAL; SOURCE 8 TISSUE: SKELETAL MUSCLE; SOURCE 9 GENE: PHKG; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PMW172; SOURCE 15 MOL_ID: 2 KEYWDS CATALYTIC MECHANISM, DIMERIZATION, PHOSPHORYLASE KINASE, REVERSIBLE KEYWDS 2 PHOSPHORYLISATION, SUBSTRATE RECOGNITION, COMPLEX (TRANSFERASE- KEYWDS 3 PEPTIDE), COMPLEX (TRANSFERASE-PEPTIDE) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.D.LOWE,M.E.M.NOBLE,V.T.SKAMNAKI,N.G.OIKONOMAKOS,D.J.OWEN, AUTHOR 2 L.N.JOHNSON REVDAT 6 09-AUG-23 2PHK 1 REMARK LINK REVDAT 5 11-APR-18 2PHK 1 REMARK REVDAT 4 04-APR-18 2PHK 1 REMARK REVDAT 3 13-JUL-11 2PHK 1 VERSN REVDAT 2 24-FEB-09 2PHK 1 VERSN REVDAT 1 13-JAN-99 2PHK 0 JRNL AUTH E.D.LOWE,M.E.NOBLE,V.T.SKAMNAKI,N.G.OIKONOMAKOS,D.J.OWEN, JRNL AUTH 2 L.N.JOHNSON JRNL TITL THE CRYSTAL STRUCTURE OF A PHOSPHORYLASE KINASE PEPTIDE JRNL TITL 2 SUBSTRATE COMPLEX: KINASE SUBSTRATE RECOGNITION. JRNL REF EMBO J. V. 16 6646 1997 JRNL REFN ISSN 0261-4189 JRNL PMID 9362479 JRNL DOI 10.1093/EMBOJ/16.22.6646 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.J.OWEN,M.E.NOBLE,E.F.GARMAN,A.C.PAPAGEORGIOU,L.N.JOHNSON REMARK 1 TITL TWO STRUCTURES OF THE CATALYTIC DOMAIN OF PHOSPHORYLASE REMARK 1 TITL 2 KINASE: AN ACTIVE PROTEIN KINASE COMPLEXED WITH SUBSTRATE REMARK 1 TITL 3 ANALOGUE AND PRODUCT REMARK 1 REF STRUCTURE V. 3 467 1995 REMARK 1 REFN ISSN 0969-2126 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.300 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 21644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : XRII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10062 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 200 DATA REDUNDANCY : 2.150 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : 0.39700 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1PHK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.9 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.20000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.60000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.60000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 97.95000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 56.55146 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 97.20000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ARG B 2 SD MET B 4 6765 0.92 REMARK 500 N GLN A 234 O ARG B 7 6765 1.05 REMARK 500 N MET A 235 O LEU B 8 6765 1.12 REMARK 500 OE2 GLU A 62 CE1 HIS A 231 6765 1.13 REMARK 500 O ARG B 2 CG MET B 4 6765 1.18 REMARK 500 C ARG B 2 SD MET B 4 6765 1.26 REMARK 500 CA GLN A 234 O ARG B 7 6765 1.27 REMARK 500 OE2 GLU A 62 ND1 HIS A 231 6765 1.28 REMARK 500 CB ARG B 2 CE MET B 4 6765 1.30 REMARK 500 N MET A 235 C LEU B 8 6765 1.38 REMARK 500 N GLN A 234 C ARG B 7 6765 1.40 REMARK 500 CA ARG B 2 CE MET B 4 6765 1.50 REMARK 500 O PRO A 176 O HOH A 456 6665 1.58 REMARK 500 OE1 GLN A 234 CD2 PHE B 6 6765 1.58 REMARK 500 O ARG A 232 CB ARG B 7 6765 1.59 REMARK 500 NH1 ARG A 27 OG1 THR A 116 6765 1.65 REMARK 500 NE2 GLN A 64 O HOH A 421 3665 1.69 REMARK 500 N MET A 235 CA LEU B 8 6765 1.73 REMARK 500 OE1 GLN A 234 CG PHE B 6 6765 1.77 REMARK 500 CA ARG B 2 SD MET B 4 6765 1.77 REMARK 500 O ARG A 232 CG ARG B 7 6765 1.82 REMARK 500 C ARG B 2 CE MET B 4 6765 1.83 REMARK 500 CZ ARG A 27 OG1 THR A 116 6765 1.83 REMARK 500 CB GLN A 234 O ARG B 7 6765 1.83 REMARK 500 CA MET A 235 O LEU B 8 6765 1.84 REMARK 500 C GLN A 234 O LEU B 8 6765 1.85 REMARK 500 N ARG B 2 SD MET B 4 6765 1.88 REMARK 500 CB SER A 57 O HOH A 430 6765 1.91 REMARK 500 NH1 ARG A 27 CB THR A 116 6765 1.94 REMARK 500 N SER A 57 O HOH A 430 6765 1.94 REMARK 500 NH2 ARG A 27 O HOH A 464 6765 1.99 REMARK 500 OE1 GLN A 234 CB PHE B 6 6765 1.99 REMARK 500 O GLY A 54 OG SER A 226 6765 1.99 REMARK 500 N GLN A 234 N LEU B 8 6765 2.00 REMARK 500 NH2 ARG A 27 OG1 THR A 116 6765 2.02 REMARK 500 CB ALA A 69 NH1 ARG A 232 6765 2.05 REMARK 500 N LEU A 236 O LEU B 8 6765 2.09 REMARK 500 CA GLN A 234 C ARG B 7 6765 2.13 REMARK 500 N GLY A 56 OG SER A 226 6765 2.15 REMARK 500 C LYS A 233 O ARG B 7 6765 2.17 REMARK 500 NE2 GLN A 289 O HOH A 460 2654 2.18 REMARK 500 N ARG B 2 CE MET B 4 6765 2.18 REMARK 500 CB GLN A 234 C ARG B 7 6765 2.18 REMARK 500 C ARG B 2 CG MET B 4 6765 2.18 REMARK 500 C1 GOL A 384 O HOH A 467 5565 2.18 REMARK 500 CB ALA A 69 CZ ARG A 232 6765 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 22 -140.30 -119.71 REMARK 500 VAL A 119 -62.63 65.41 REMARK 500 ASP A 149 41.63 -163.78 REMARK 500 ASP A 167 82.50 48.12 REMARK 500 PHE A 248 73.77 -102.13 REMARK 500 SER A 250 -125.50 9.94 REMARK 500 GLN A 288 153.93 123.26 REMARK 500 GLN A 289 -15.21 -148.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 383 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 154 OD1 REMARK 620 2 ASP A 167 OD2 89.1 REMARK 620 3 ATP A 381 O2G 121.8 92.7 REMARK 620 4 ATP A 381 O2A 91.8 86.1 146.4 REMARK 620 5 ATP A 381 O3B 175.4 91.2 62.7 83.7 REMARK 620 6 HOH A 438 O 87.7 176.5 90.2 92.5 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 382 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 167 OD1 REMARK 620 2 ASP A 167 OD2 55.2 REMARK 620 3 ATP A 381 O3G 148.4 93.8 REMARK 620 4 ATP A 381 O2B 87.6 83.6 82.1 REMARK 620 5 HOH A 405 O 98.0 102.3 94.5 173.5 REMARK 620 6 HOH A 418 O 108.3 163.4 102.2 94.4 80.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 382 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 383 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 384 DBREF 2PHK A 14 290 UNP P00518 PHKG1_RABIT 14 290 DBREF 2PHK B 2 8 PDB 2PHK 2PHK 2 8 SEQRES 1 A 277 GLY PHE TYR GLU ASN TYR GLU PRO LYS GLU ILE LEU GLY SEQRES 2 A 277 ARG GLY VAL SER SER VAL VAL ARG ARG CYS ILE HIS LYS SEQRES 3 A 277 PRO THR CYS LYS GLU TYR ALA VAL LYS ILE ILE ASP VAL SEQRES 4 A 277 THR GLY GLY GLY SER PHE SER ALA GLU GLU VAL GLN GLU SEQRES 5 A 277 LEU ARG GLU ALA THR LEU LYS GLU VAL ASP ILE LEU ARG SEQRES 6 A 277 LYS VAL SER GLY HIS PRO ASN ILE ILE GLN LEU LYS ASP SEQRES 7 A 277 THR TYR GLU THR ASN THR PHE PHE PHE LEU VAL PHE ASP SEQRES 8 A 277 LEU MET LYS LYS GLY GLU LEU PHE ASP TYR LEU THR GLU SEQRES 9 A 277 LYS VAL THR LEU SER GLU LYS GLU THR ARG LYS ILE MET SEQRES 10 A 277 ARG ALA LEU LEU GLU VAL ILE CYS ALA LEU HIS LYS LEU SEQRES 11 A 277 ASN ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN ILE LEU SEQRES 12 A 277 LEU ASP ASP ASP MET ASN ILE LYS LEU THR ASP PHE GLY SEQRES 13 A 277 PHE SER CYS GLN LEU ASP PRO GLY GLU LYS LEU ARG GLU SEQRES 14 A 277 VAL CYS GLY THR PRO SER TYR LEU ALA PRO GLU ILE ILE SEQRES 15 A 277 GLU CYS SER MET ASN ASP ASN HIS PRO GLY TYR GLY LYS SEQRES 16 A 277 GLU VAL ASP MET TRP SER THR GLY VAL ILE MET TYR THR SEQRES 17 A 277 LEU LEU ALA GLY SER PRO PRO PHE TRP HIS ARG LYS GLN SEQRES 18 A 277 MET LEU MET LEU ARG MET ILE MET SER GLY ASN TYR GLN SEQRES 19 A 277 PHE GLY SER PRO GLU TRP ASP ASP TYR SER ASP THR VAL SEQRES 20 A 277 LYS ASP LEU VAL SER ARG PHE LEU VAL VAL GLN PRO GLN SEQRES 21 A 277 LYS ARG TYR THR ALA GLU GLU ALA LEU ALA HIS PRO PHE SEQRES 22 A 277 PHE GLN GLN TYR SEQRES 1 B 7 ARG GLN MET SER PHE ARG LEU HET MN A 382 1 HET MN A 383 1 HET ATP A 381 31 HET GOL A 384 6 HETNAM MN MANGANESE (II) ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 2(MN 2+) FORMUL 5 ATP C10 H16 N5 O13 P3 FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *86(H2 O) HELIX 1 1 ALA A 60 LYS A 79 1 20 HELIX 2 2 LEU A 111 LYS A 118 1 8 HELIX 3 3 GLU A 123 LEU A 143 1 21 HELIX 4 4 PRO A 152 ASN A 154 5 3 HELIX 5 5 PRO A 187 TYR A 189 5 3 HELIX 6 6 PRO A 192 CYS A 197 1 6 HELIX 7 7 LYS A 208 ALA A 224 5 17 HELIX 8 8 GLN A 234 SER A 243 1 10 HELIX 9 9 GLU A 252 ASP A 255 5 4 HELIX 10 10 ASP A 258 PHE A 267 1 10 HELIX 11 11 PRO A 272 LYS A 274 5 3 HELIX 12 12 ALA A 278 ALA A 283 1 6 SHEET 1 A 5 TYR A 19 PRO A 21 0 SHEET 2 A 5 SER A 31 HIS A 38 -1 N ILE A 37 O GLU A 20 SHEET 3 A 5 GLU A 44 ASP A 51 -1 N ILE A 49 O VAL A 32 SHEET 4 A 5 PHE A 98 ASP A 104 -1 N PHE A 103 O ALA A 46 SHEET 5 A 5 LEU A 89 GLU A 94 -1 N TYR A 93 O PHE A 100 SHEET 1 B 2 ILE A 155 LEU A 157 0 SHEET 2 B 2 ILE A 163 LEU A 165 -1 N LYS A 164 O LEU A 156 SHEET 1 C 2 ILE A 24 ARG A 27 0 SHEET 2 C 2 VAL A 32 ARG A 34 -1 N VAL A 33 O LEU A 25 LINK OD1 ASN A 154 MN MN A 383 1555 1555 2.27 LINK OD1 ASP A 167 MN MN A 382 1555 1555 2.37 LINK OD2 ASP A 167 MN MN A 382 1555 1555 2.32 LINK OD2 ASP A 167 MN MN A 383 1555 1555 2.20 LINK O3G ATP A 381 MN MN A 382 1555 1555 2.26 LINK O2B ATP A 381 MN MN A 382 1555 1555 2.26 LINK O2G ATP A 381 MN MN A 383 1555 1555 2.02 LINK O2A ATP A 381 MN MN A 383 1555 1555 2.13 LINK O3B ATP A 381 MN MN A 383 1555 1555 2.71 LINK MN MN A 382 O HOH A 405 1555 1555 2.48 LINK MN MN A 382 O HOH A 418 1555 1555 2.30 LINK MN MN A 383 O HOH A 438 1555 1555 2.22 SITE 1 AC1 4 ASP A 167 ATP A 381 HOH A 405 HOH A 418 SITE 1 AC2 4 ASN A 154 ASP A 167 ATP A 381 HOH A 438 SITE 1 AC3 22 GLY A 26 GLY A 28 SER A 31 VAL A 33 SITE 2 AC3 22 ALA A 46 LYS A 48 ASP A 104 MET A 106 SITE 3 AC3 22 GLU A 110 LYS A 151 GLU A 153 ASN A 154 SITE 4 AC3 22 ASP A 167 MN A 382 MN A 383 HOH A 385 SITE 5 AC3 22 HOH A 387 HOH A 388 HOH A 438 HOH A 458 SITE 6 AC3 22 ARG B 2 SER B 5 SITE 1 AC4 5 SER A 250 LYS A 274 ARG A 275 GLU A 280 SITE 2 AC4 5 HOH A 467 CRYST1 65.300 65.300 145.800 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015314 0.008842 0.000000 0.00000 SCALE2 0.000000 0.017683 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006859 0.00000