HEADER HYDROLASE 13-APR-07 2PIB OBSLTE 17-NOV-09 2PIB 3KBB TITLE CRYSTAL STRUCTURE OF PUTATIVE BETA-PHOSPHOGLUCOMUTASE FROM TITLE 2 THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORYLATED CARBOHYDRATES PHOSPHATASE TM_1254; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-PHOSPHOGLUCOMUTASE; COMPND 5 EC: 3.1.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8, DSM 3109, JCM 10099; SOURCE 5 ATCC: 43589; SOURCE 6 GENE: BPGM, TM_1254; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA834(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS 3D-STRUCTURE, STRUCTURAL GENOMICS, THERMOTOGA MARITIMA, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.V.ANTONYUK,M.J.ELLIS,R.W.STRANGE,S.S.HASNAIN,Y.BESSHO, AUTHOR 2 S.KURAMITSU,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI) REVDAT 3 17-NOV-09 2PIB 1 OBSLTE REVDAT 2 24-FEB-09 2PIB 1 VERSN REVDAT 1 16-OCT-07 2PIB 0 JRNL AUTH S.V.ANTONYUK,M.J.ELLIS,R.W.STRANGE,S.S.HASNAIN, JRNL AUTH 2 Y.BESSHO,S.KURAMITSU,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE JRNL TITL 2 BETA-PHOSPHOGLUCOMUTASE FROM THERMOTOGA MARITIMA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 50497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2686 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2818 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3567 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.02000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 1.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.289 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3690 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2627 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4984 ; 1.476 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6435 ; 0.936 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 5.198 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;36.486 ;24.235 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 722 ;13.755 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;18.302 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 558 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3998 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 701 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 825 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2731 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1746 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1929 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 360 ; 0.194 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.262 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2219 ; 0.846 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 888 ; 0.252 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3604 ; 1.466 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1485 ; 2.502 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1366 ; 3.945 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2PIB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-07. REMARK 100 THE RCSB ID CODE IS RCSB042405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98000, 0.98000, 0.92000, REMARK 200 1.04500 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57349 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : 0.25000 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE, 0.1M NA3 REMARK 280 CITRATE PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 187 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE MSE A 13 O HOH A 461 1.84 REMARK 500 OE2 GLU A 2 O HOH A 471 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 11 -62.62 -124.39 REMARK 500 VAL B 11 -60.55 -125.73 REMARK 500 LEU B 188 -62.97 98.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 222 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 138 O REMARK 620 2 ASP A 142 O 114.6 REMARK 620 3 ILE A 145 N 117.1 97.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 221 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 182 OH REMARK 620 2 GLU B 214 OE1 120.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 217 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 221 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 222 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 224 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 225 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 226 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 227 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 228 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 218 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 219 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 220 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 221 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 219 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TMA001001254.1 RELATED DB: TARGETDB DBREF 2PIB A 1 216 UNP Q9X0Y1 P1254_THEMA 1 216 DBREF 2PIB B 1 216 UNP Q9X0Y1 P1254_THEMA 1 216 SEQRES 1 A 216 MSE GLU ALA VAL ILE PHE ASP MSE ASP GLY VAL LEU MSE SEQRES 2 A 216 ASP THR GLU PRO LEU TYR PHE GLU ALA TYR ARG ARG VAL SEQRES 3 A 216 ALA GLU SER TYR GLY LYS PRO TYR THR GLU ASP LEU HIS SEQRES 4 A 216 ARG ARG ILE MSE GLY VAL PRO GLU ARG GLU GLY LEU PRO SEQRES 5 A 216 ILE LEU MSE GLU ALA LEU GLU ILE LYS ASP SER LEU GLU SEQRES 6 A 216 ASN PHE LYS LYS ARG VAL HIS GLU GLU LYS LYS ARG VAL SEQRES 7 A 216 PHE SER GLU LEU LEU LYS GLU ASN PRO GLY VAL ARG GLU SEQRES 8 A 216 ALA LEU GLU PHE VAL LYS SER LYS ARG ILE LYS LEU ALA SEQRES 9 A 216 LEU ALA THR SER THR PRO GLN ARG GLU ALA LEU GLU ARG SEQRES 10 A 216 LEU ARG ARG LEU ASP LEU GLU LYS TYR PHE ASP VAL MSE SEQRES 11 A 216 VAL PHE GLY ASP GLN VAL LYS ASN GLY LYS PRO ASP PRO SEQRES 12 A 216 GLU ILE TYR LEU LEU VAL LEU GLU ARG LEU ASN VAL VAL SEQRES 13 A 216 PRO GLU LYS VAL VAL VAL PHE GLU ASP SER LYS SER GLY SEQRES 14 A 216 VAL GLU ALA ALA LYS SER ALA GLY ILE GLU ARG ILE TYR SEQRES 15 A 216 GLY VAL VAL HIS SER LEU ASN ASP GLY LYS ALA LEU LEU SEQRES 16 A 216 GLU ALA GLY ALA VAL ALA LEU VAL LYS PRO GLU GLU ILE SEQRES 17 A 216 LEU ASN VAL LEU LYS GLU VAL LEU SEQRES 1 B 216 MSE GLU ALA VAL ILE PHE ASP MSE ASP GLY VAL LEU MSE SEQRES 2 B 216 ASP THR GLU PRO LEU TYR PHE GLU ALA TYR ARG ARG VAL SEQRES 3 B 216 ALA GLU SER TYR GLY LYS PRO TYR THR GLU ASP LEU HIS SEQRES 4 B 216 ARG ARG ILE MSE GLY VAL PRO GLU ARG GLU GLY LEU PRO SEQRES 5 B 216 ILE LEU MSE GLU ALA LEU GLU ILE LYS ASP SER LEU GLU SEQRES 6 B 216 ASN PHE LYS LYS ARG VAL HIS GLU GLU LYS LYS ARG VAL SEQRES 7 B 216 PHE SER GLU LEU LEU LYS GLU ASN PRO GLY VAL ARG GLU SEQRES 8 B 216 ALA LEU GLU PHE VAL LYS SER LYS ARG ILE LYS LEU ALA SEQRES 9 B 216 LEU ALA THR SER THR PRO GLN ARG GLU ALA LEU GLU ARG SEQRES 10 B 216 LEU ARG ARG LEU ASP LEU GLU LYS TYR PHE ASP VAL MSE SEQRES 11 B 216 VAL PHE GLY ASP GLN VAL LYS ASN GLY LYS PRO ASP PRO SEQRES 12 B 216 GLU ILE TYR LEU LEU VAL LEU GLU ARG LEU ASN VAL VAL SEQRES 13 B 216 PRO GLU LYS VAL VAL VAL PHE GLU ASP SER LYS SER GLY SEQRES 14 B 216 VAL GLU ALA ALA LYS SER ALA GLY ILE GLU ARG ILE TYR SEQRES 15 B 216 GLY VAL VAL HIS SER LEU ASN ASP GLY LYS ALA LEU LEU SEQRES 16 B 216 GLU ALA GLY ALA VAL ALA LEU VAL LYS PRO GLU GLU ILE SEQRES 17 B 216 LEU ASN VAL LEU LYS GLU VAL LEU MODRES 2PIB MSE A 1 MET SELENOMETHIONINE MODRES 2PIB MSE A 8 MET SELENOMETHIONINE MODRES 2PIB MSE A 13 MET SELENOMETHIONINE MODRES 2PIB MSE A 43 MET SELENOMETHIONINE MODRES 2PIB MSE A 55 MET SELENOMETHIONINE MODRES 2PIB MSE A 130 MET SELENOMETHIONINE MODRES 2PIB MSE B 1 MET SELENOMETHIONINE MODRES 2PIB MSE B 8 MET SELENOMETHIONINE MODRES 2PIB MSE B 13 MET SELENOMETHIONINE MODRES 2PIB MSE B 43 MET SELENOMETHIONINE MODRES 2PIB MSE B 55 MET SELENOMETHIONINE MODRES 2PIB MSE B 130 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 8 8 HET MSE A 13 13 HET MSE A 43 13 HET MSE A 55 8 HET MSE A 130 8 HET MSE B 1 8 HET MSE B 8 8 HET MSE B 13 13 HET MSE B 43 13 HET MSE B 55 8 HET MSE B 130 8 HET SO4 A 217 5 HET NA B 221 1 HET NA A 222 1 HET SO4 A 224 5 HET SO4 A 225 5 HET SO4 A 226 5 HET SO4 A 227 5 HET SO4 B 228 5 HET GOL A 218 6 HET GOL A 219 12 HET GOL A 220 6 HET GOL A 221 6 HET GOL B 219 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 SO4 6(O4 S 2-) FORMUL 4 NA 2(NA 1+) FORMUL 11 GOL 5(C3 H8 O3) FORMUL 16 HOH *495(H2 O) HELIX 1 1 THR A 15 PRO A 17 5 3 HELIX 2 2 LEU A 18 TYR A 30 1 13 HELIX 3 3 THR A 35 MSE A 43 1 9 HELIX 4 4 PRO A 46 LEU A 58 1 13 HELIX 5 5 SER A 63 LEU A 83 1 21 HELIX 6 6 GLY A 88 LYS A 99 1 12 HELIX 7 7 PRO A 110 LEU A 121 1 12 HELIX 8 8 LEU A 123 PHE A 127 5 5 HELIX 9 9 PHE A 132 VAL A 136 5 5 HELIX 10 10 PRO A 143 ASN A 154 1 12 HELIX 11 11 VAL A 156 GLU A 158 5 3 HELIX 12 12 SER A 166 ALA A 176 1 11 HELIX 13 13 GLY A 191 ALA A 197 1 7 HELIX 14 14 LYS A 204 GLU A 206 5 3 HELIX 15 15 GLU A 207 LEU A 216 1 10 HELIX 16 16 THR B 15 PRO B 17 5 3 HELIX 17 17 LEU B 18 TYR B 30 1 13 HELIX 18 18 THR B 35 MSE B 43 1 9 HELIX 19 19 PRO B 46 LEU B 58 1 13 HELIX 20 20 SER B 63 LEU B 83 1 21 HELIX 21 21 GLY B 88 LYS B 99 1 12 HELIX 22 22 PRO B 110 LEU B 121 1 12 HELIX 23 23 LEU B 123 PHE B 127 5 5 HELIX 24 24 PHE B 132 VAL B 136 5 5 HELIX 25 25 PRO B 143 ASN B 154 1 12 HELIX 26 26 VAL B 156 GLU B 158 5 3 HELIX 27 27 SER B 166 ALA B 176 1 11 HELIX 28 28 GLY B 191 ALA B 197 1 7 HELIX 29 29 LYS B 204 GLU B 206 5 3 HELIX 30 30 GLU B 207 LEU B 216 1 10 SHEET 1 A 6 VAL A 129 VAL A 131 0 SHEET 2 A 6 LYS A 102 ALA A 106 1 N LEU A 105 O VAL A 131 SHEET 3 A 6 ALA A 3 ASP A 7 1 N VAL A 4 O ALA A 104 SHEET 4 A 6 VAL A 160 GLU A 164 1 O VAL A 161 N ILE A 5 SHEET 5 A 6 ARG A 180 VAL A 184 1 O VAL A 184 N GLU A 164 SHEET 6 A 6 ALA A 201 VAL A 203 1 O ALA A 201 N GLY A 183 SHEET 1 B 6 VAL B 129 VAL B 131 0 SHEET 2 B 6 LYS B 102 ALA B 106 1 N LEU B 105 O VAL B 131 SHEET 3 B 6 ALA B 3 ASP B 7 1 N PHE B 6 O ALA B 106 SHEET 4 B 6 VAL B 160 GLU B 164 1 O VAL B 161 N ILE B 5 SHEET 5 B 6 ARG B 180 VAL B 184 1 O VAL B 184 N GLU B 164 SHEET 6 B 6 ALA B 201 VAL B 203 1 O ALA B 201 N GLY B 183 LINK O ASN A 138 NA NA A 222 1555 1555 2.79 LINK O ASP A 142 NA NA A 222 1555 1555 2.79 LINK N ILE A 145 NA NA A 222 1555 1555 2.86 LINK OH TYR B 182 NA NA B 221 1555 1555 2.63 LINK OE1 GLU B 214 NA NA B 221 1555 1555 2.70 LINK C MSE A 1 N GLU A 2 1555 1555 1.32 LINK C ASP A 7 N MSE A 8 1555 1555 1.33 LINK C MSE A 8 N ASP A 9 1555 1555 1.32 LINK C LEU A 12 N MSE A 13 1555 1555 1.33 LINK C MSE A 13 N ASP A 14 1555 1555 1.32 LINK C ILE A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N GLY A 44 1555 1555 1.33 LINK C LEU A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N GLU A 56 1555 1555 1.32 LINK C VAL A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N VAL A 131 1555 1555 1.33 LINK C MSE B 1 N GLU B 2 1555 1555 1.33 LINK C ASP B 7 N MSE B 8 1555 1555 1.32 LINK C MSE B 8 N ASP B 9 1555 1555 1.32 LINK C LEU B 12 N MSE B 13 1555 1555 1.32 LINK C MSE B 13 N ASP B 14 1555 1555 1.32 LINK C ILE B 42 N MSE B 43 1555 1555 1.33 LINK C MSE B 43 N GLY B 44 1555 1555 1.33 LINK C LEU B 54 N MSE B 55 1555 1555 1.33 LINK C MSE B 55 N GLU B 56 1555 1555 1.33 LINK C VAL B 129 N MSE B 130 1555 1555 1.33 LINK C MSE B 130 N VAL B 131 1555 1555 1.31 CISPEP 1 LYS A 140 PRO A 141 0 8.66 CISPEP 2 LYS B 140 PRO B 141 0 9.96 SITE 1 AC1 7 HOH A 294 HOH A 365 HOH A 402 ASP B 190 SITE 2 AC1 7 GLY B 191 LYS B 192 ALA B 193 SITE 1 AC2 4 ARG A 112 HOH A 244 TYR B 182 GLU B 214 SITE 1 AC3 6 ASN A 138 GLY A 139 LYS A 140 ASP A 142 SITE 2 AC3 6 GLU A 144 ILE A 145 SITE 1 AC4 7 ASP A 190 GLY A 191 LYS A 192 ALA A 193 SITE 2 AC4 7 HOH A 318 HOH A 360 HOH A 441 SITE 1 AC5 3 PRO A 46 GLU A 47 HOH A 407 SITE 1 AC6 11 ASP A 7 MSE A 8 ASP A 9 THR A 107 SITE 2 AC6 11 SER A 108 THR A 109 LYS A 140 HOH A 259 SITE 3 AC6 11 HOH A 450 HOH A 451 HOH A 456 SITE 1 AC7 4 SER A 166 LYS A 167 SER A 168 HOH A 268 SITE 1 AC8 10 ASP B 7 MSE B 8 ASP B 9 THR B 107 SITE 2 AC8 10 SER B 108 THR B 109 LYS B 140 HOH B 252 SITE 3 AC8 10 HOH B 418 HOH B 436 SITE 1 AC9 9 ASP A 128 VAL A 129 MSE A 130 HOH A 263 SITE 2 AC9 9 HOH A 322 HOH A 474 LEU B 188 ASN B 189 SITE 3 AC9 9 HOH B 382 SITE 1 BC1 12 GLN A 135 HOH A 263 HOH A 285 HOH A 301 SITE 2 BC1 12 HOH A 474 LEU B 188 ASN B 189 ASP B 190 SITE 3 BC1 12 LEU B 202 LYS B 204 GLU B 207 HOH B 437 SITE 1 BC2 5 MSE A 1 GLU A 158 ARG A 180 VAL A 215 SITE 2 BC2 5 HOH A 374 SITE 1 BC3 9 LEU A 188 ASP A 190 LYS A 204 GLU A 207 SITE 2 BC3 9 HOH A 271 HOH A 310 HOH A 350 HOH A 439 SITE 3 BC3 9 ARG B 152 SITE 1 BC4 7 ASN A 189 ASP B 128 VAL B 129 MSE B 130 SITE 2 BC4 7 PHE B 132 HOH B 276 HOH B 309 CRYST1 66.717 48.171 83.807 90.00 90.00 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014989 0.000000 0.000003 0.00000 SCALE2 0.000000 0.020759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011932 0.00000 HETATM 1 N MSE A 1 30.950 58.101 11.406 1.00 35.98 N HETATM 2 CA MSE A 1 31.573 57.213 12.426 1.00 34.70 C HETATM 3 C MSE A 1 33.062 57.200 12.163 1.00 34.58 C HETATM 4 O MSE A 1 33.488 57.294 11.003 1.00 35.05 O HETATM 5 CB MSE A 1 30.989 55.820 12.296 1.00 35.01 C HETATM 6 CG MSE A 1 30.909 55.088 13.577 1.00 34.03 C HETATM 7 SE MSE A 1 29.712 55.792 14.915 0.70 33.62 SE HETATM 8 CE MSE A 1 29.363 57.600 14.382 0.70 39.20 C