data_2PIS # _entry.id 2PIS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PIS pdb_00002pis 10.2210/pdb2pis/pdb NDB BD0100 ? ? RCSB RCSB042419 ? ? WWPDB D_1000042419 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_ref_seq # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq.db_align_beg' 5 3 'Structure model' '_struct_ref_seq.db_align_end' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PIS _pdbx_database_status.recvd_initial_deposition_date 2007-04-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Matsuda, S.' 1 'Fillo, J.D.' 2 'Henry, A.A.' 3 'Wilkins, S.J.' 4 'Rai, P.' 5 'Dwyer, T.J.' 6 'Geierstanger, B.H.' 7 'Wemmer, D.E.' 8 'Schultz, P.G.' 9 'Spraggon, G.' 10 'Romesberg, F.E.' 11 # _citation.id primary _citation.title 'Efforts toward expansion of the genetic alphabet: structure and replication of unnatural base pairs.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 129 _citation.page_first 10466 _citation.page_last 10473 _citation.year 2007 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17685517 _citation.pdbx_database_id_DOI 10.1021/ja072276d # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Matsuda, S.' 1 ? primary 'Fillo, J.D.' 2 ? primary 'Henry, A.A.' 3 ? primary 'Rai, P.' 4 ? primary 'Wilkens, S.J.' 5 ? primary 'Dwyer, T.J.' 6 ? primary 'Geierstanger, B.H.' 7 ? primary 'Wemmer, D.E.' 8 ? primary 'Schultz, P.G.' 9 ? primary 'Spraggon, G.' 10 ? primary 'Romesberg, F.E.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3') ; 4016.470 12 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 6 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(CBR)(DG)(DA)(DA)(FFD)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAANTTCGCG _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J,K,L _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'MAGNESIUM ION' _pdbx_entity_nonpoly.comp_id MG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 CBR n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 FFD n 1 8 DT n 1 9 DT n 1 10 DC n 1 11 DG n 1 12 DC n 1 13 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesized DNA' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 FFD 'DNA linking' . '(1R)-1,4-anhydro-2-deoxy-1-(3-fluorophenyl)-5-O-phosphono-D-erythro-pentitol' ? 'C11 H14 F O6 P' 292.197 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 CBR 3 3 3 CBR CBR A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 FFD 7 7 7 FFD FFD A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DC 10 10 10 DC C A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DC 12 12 12 DC C A . n A 1 13 DG 13 13 13 DG G A . n B 1 1 DC 1 14 14 DC C B . n B 1 2 DG 2 15 15 DG G B . n B 1 3 CBR 3 16 16 CBR CBR B . n B 1 4 DG 4 17 17 DG G B . n B 1 5 DA 5 18 18 DA A B . n B 1 6 DA 6 19 19 DA A B . n B 1 7 FFD 7 20 20 FFD FFD B . n B 1 8 DT 8 21 21 DT T B . n B 1 9 DT 9 22 22 DT T B . n B 1 10 DC 10 23 23 DC C B . n B 1 11 DG 11 24 24 DG G B . n B 1 12 DC 12 25 25 DC C B . n B 1 13 DG 13 26 26 DG G B . n C 1 1 DC 1 1 1 DC C C . n C 1 2 DG 2 2 2 DG G C . n C 1 3 CBR 3 3 3 CBR CBR C . n C 1 4 DG 4 4 4 DG G C . n C 1 5 DA 5 5 5 DA A C . n C 1 6 DA 6 6 6 DA A C . n C 1 7 FFD 7 7 7 FFD FFD C . n C 1 8 DT 8 8 8 DT T C . n C 1 9 DT 9 9 9 DT T C . n C 1 10 DC 10 10 10 DC C C . n C 1 11 DG 11 11 11 DG G C . n C 1 12 DC 12 12 12 DC C C . n C 1 13 DG 13 13 13 DG G C . n D 1 1 DC 1 14 14 DC C D . n D 1 2 DG 2 15 15 DG G D . n D 1 3 CBR 3 16 16 CBR CBR D . n D 1 4 DG 4 17 17 DG G D . n D 1 5 DA 5 18 18 DA A D . n D 1 6 DA 6 19 19 DA A D . n D 1 7 FFD 7 20 20 FFD FFD D . n D 1 8 DT 8 21 21 DT T D . n D 1 9 DT 9 22 22 DT T D . n D 1 10 DC 10 23 23 DC C D . n D 1 11 DG 11 24 24 DG G D . n D 1 12 DC 12 25 25 DC C D . n D 1 13 DG 13 26 26 DG G D . n E 1 1 DC 1 1 1 DC C E . n E 1 2 DG 2 2 2 DG G E . n E 1 3 CBR 3 3 3 CBR CBR E . n E 1 4 DG 4 4 4 DG G E . n E 1 5 DA 5 5 5 DA A E . n E 1 6 DA 6 6 6 DA A E . n E 1 7 FFD 7 7 7 FFD FFD E . n E 1 8 DT 8 8 8 DT T E . n E 1 9 DT 9 9 9 DT T E . n E 1 10 DC 10 10 10 DC C E . n E 1 11 DG 11 11 11 DG G E . n E 1 12 DC 12 12 12 DC C E . n E 1 13 DG 13 13 13 DG G E . n F 1 1 DC 1 14 14 DC C F . n F 1 2 DG 2 15 15 DG G F . n F 1 3 CBR 3 16 16 CBR CBR F . n F 1 4 DG 4 17 17 DG G F . n F 1 5 DA 5 18 18 DA A F . n F 1 6 DA 6 19 19 DA A F . n F 1 7 FFD 7 20 20 FFD FFD F . n F 1 8 DT 8 21 21 DT T F . n F 1 9 DT 9 22 22 DT T F . n F 1 10 DC 10 23 23 DC C F . n F 1 11 DG 11 24 24 DG G F . n F 1 12 DC 12 25 25 DC C F . n F 1 13 DG 13 26 26 DG G F . n G 1 1 DC 1 1 1 DC C G . n G 1 2 DG 2 2 2 DG G G . n G 1 3 CBR 3 3 3 CBR CBR G . n G 1 4 DG 4 4 4 DG G G . n G 1 5 DA 5 5 5 DA A G . n G 1 6 DA 6 6 6 DA A G . n G 1 7 FFD 7 7 7 FFD FFD G . n G 1 8 DT 8 8 8 DT T G . n G 1 9 DT 9 9 9 DT T G . n G 1 10 DC 10 10 10 DC C G . n G 1 11 DG 11 11 11 DG G G . n G 1 12 DC 12 12 12 DC C G . n G 1 13 DG 13 13 13 DG G G . n H 1 1 DC 1 14 14 DC C H . n H 1 2 DG 2 15 15 DG G H . n H 1 3 CBR 3 16 16 CBR CBR H . n H 1 4 DG 4 17 17 DG G H . n H 1 5 DA 5 18 18 DA A H . n H 1 6 DA 6 19 19 DA A H . n H 1 7 FFD 7 20 20 FFD FFD H . n H 1 8 DT 8 21 21 DT T H . n H 1 9 DT 9 22 22 DT T H . n H 1 10 DC 10 23 23 DC C H . n H 1 11 DG 11 24 24 DG G H . n H 1 12 DC 12 25 25 DC C H . n H 1 13 DG 13 26 26 DG G H . n I 1 1 DC 1 1 1 DC C I . n I 1 2 DG 2 2 2 DG G I . n I 1 3 CBR 3 3 3 CBR CBR I . n I 1 4 DG 4 4 4 DG G I . n I 1 5 DA 5 5 5 DA A I . n I 1 6 DA 6 6 6 DA A I . n I 1 7 FFD 7 7 7 FFD FFD I . n I 1 8 DT 8 8 8 DT T I . n I 1 9 DT 9 9 9 DT T I . n I 1 10 DC 10 10 10 DC C I . n I 1 11 DG 11 11 11 DG G I . n I 1 12 DC 12 12 12 DC C I . n I 1 13 DG 13 13 13 DG G I . n J 1 1 DC 1 14 14 DC C J . n J 1 2 DG 2 15 15 DG G J . n J 1 3 CBR 3 16 16 CBR CBR J . n J 1 4 DG 4 17 17 DG G J . n J 1 5 DA 5 18 18 DA A J . n J 1 6 DA 6 19 19 DA A J . n J 1 7 FFD 7 20 20 FFD FFD J . n J 1 8 DT 8 21 21 DT T J . n J 1 9 DT 9 22 22 DT T J . n J 1 10 DC 10 23 23 DC C J . n J 1 11 DG 11 24 24 DG G J . n J 1 12 DC 12 25 25 DC C J . n J 1 13 DG 13 26 26 DG G J . n K 1 1 DC 1 1 1 DC C K . n K 1 2 DG 2 2 2 DG G K . n K 1 3 CBR 3 3 3 CBR CBR K . n K 1 4 DG 4 4 4 DG G K . n K 1 5 DA 5 5 5 DA A K . n K 1 6 DA 6 6 6 DA A K . n K 1 7 FFD 7 7 7 FFD FFD K . n K 1 8 DT 8 8 8 DT T K . n K 1 9 DT 9 9 9 DT T K . n K 1 10 DC 10 10 10 DC C K . n K 1 11 DG 11 11 11 DG G K . n K 1 12 DC 12 12 12 DC C K . n K 1 13 DG 13 13 13 DG G K . n L 1 1 DC 1 14 14 DC C L . n L 1 2 DG 2 15 15 DG G L . n L 1 3 CBR 3 16 16 CBR CBR L . n L 1 4 DG 4 17 17 DG G L . n L 1 5 DA 5 18 18 DA A L . n L 1 6 DA 6 19 19 DA A L . n L 1 7 FFD 7 20 20 FFD FFD L . n L 1 8 DT 8 21 21 DT T L . n L 1 9 DT 9 22 22 DT T L . n L 1 10 DC 10 23 23 DC C L . n L 1 11 DG 11 24 24 DG G L . n L 1 12 DC 12 25 25 DC C L . n L 1 13 DG 13 26 26 DG G L . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 MG 1 2 2 MG MG D . N 2 MG 1 14 3 MG MG E . O 2 MG 1 1 1 MG MG F . P 2 MG 1 14 4 MG MG G . Q 2 MG 1 15 5 MG MG G . R 2 MG 1 16 6 MG MG G . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 ADSC 'data collection' Quantum ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SOLVE phasing . ? 5 # _cell.entry_id 2PIS _cell.length_a 146.025 _cell.length_b 146.025 _cell.length_c 93.140 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 192 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PIS _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2PIS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_percent_sol 50.53 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '35% (v/v) MPD in 0.1M sodium cacodylate , pH 6.0, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 2 MPD ? ? ? 1 4 2 'sodium cacodylate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-11-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.92017 1.0 2 0.9203 1.0 3 0.9050 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.92017, 0.9203, 0.9050' # _reflns.entry_id 2PIS _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.8 _reflns.d_resolution_low 100.0 _reflns.number_all 12382 _reflns.number_obs 12382 _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_Rsym_value 0.054 _reflns.pdbx_netI_over_sigmaI 40.58 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 15.3 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.9 _reflns_shell.percent_possible_all 88.5 _reflns_shell.Rmerge_I_obs 0.597 _reflns_shell.pdbx_Rsym_value 0.388 _reflns_shell.meanI_over_sigI_obs 3.73 _reflns_shell.pdbx_redundancy 12.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1103 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2PIS _refine.ls_number_reflns_obs 11034 _refine.ls_number_reflns_all 11034 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 100.00 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 91.80 _refine.ls_R_factor_obs 0.22771 _refine.ls_R_factor_all 0.22771 _refine.ls_R_factor_R_work 0.2238 _refine.ls_R_factor_R_free 0.3029 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 599 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.902 _refine.B_iso_mean 59.350 _refine.aniso_B[1][1] -2.53 _refine.aniso_B[2][2] -2.53 _refine.aniso_B[3][3] 5.05 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ELECTRON DENSITY FOR THE CHAINS I,J AND K,L WAS EXTREMELY WEAK. THE AUTHOR STATES THAT THESE CHAINS WERE MODELED TENTATIVELY INTO THE DENSITY. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.475 _refine.overall_SU_ML 0.317 _refine.overall_SU_B 15.642 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3144 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3150 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 100.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.021 ? 3552 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.131 2.997 ? 5468 'X-RAY DIFFRACTION' ? r_chiral_restr 0.053 0.200 ? 600 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1608 'X-RAY DIFFRACTION' ? r_nbd_refined 0.338 0.200 ? 1740 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.342 0.200 ? 1974 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.300 0.200 ? 119 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.345 0.200 ? 120 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.178 0.200 ? 5 'X-RAY DIFFRACTION' ? r_mcbond_it 2.970 2.000 ? 24 'X-RAY DIFFRACTION' ? r_mcangle_it 12.619 5.000 ? 48 'X-RAY DIFFRACTION' ? r_scbond_it 13.620 8.000 ? 5040 'X-RAY DIFFRACTION' ? r_scangle_it 16.424 11.000 ? 5340 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.875 _refine_ls_shell.number_reflns_R_work 620 _refine_ls_shell.R_factor_R_work 0.364 _refine_ls_shell.percent_reflns_obs 72.10 _refine_ls_shell.R_factor_R_free 0.48 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2PIS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2PIS _struct.title 'Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PIS _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'nucleic acid, duplex, replication, unnatural base, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2PIS _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code 'CGCGAA(FFD)TTCGCG' _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession 2PIS _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2PIS A 1 ? 13 ? 2PIS 1 ? 13 ? 1 13 2 1 2PIS B 1 ? 13 ? 2PIS 14 ? 26 ? 14 26 3 1 2PIS C 1 ? 13 ? 2PIS 1 ? 13 ? 1 13 4 1 2PIS D 1 ? 13 ? 2PIS 14 ? 26 ? 14 26 5 1 2PIS E 1 ? 13 ? 2PIS 1 ? 13 ? 1 13 6 1 2PIS F 1 ? 13 ? 2PIS 14 ? 26 ? 14 26 7 1 2PIS G 1 ? 13 ? 2PIS 1 ? 13 ? 1 13 8 1 2PIS H 1 ? 13 ? 2PIS 14 ? 26 ? 14 26 9 1 2PIS I 1 ? 13 ? 2PIS 1 ? 13 ? 1 13 10 1 2PIS J 1 ? 13 ? 2PIS 14 ? 26 ? 14 26 11 1 2PIS K 1 ? 13 ? 2PIS 1 ? 13 ? 1 13 12 1 2PIS L 1 ? 13 ? 2PIS 14 ? 26 ? 14 26 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 4 author_defined_assembly ? dimeric 2 5 author_defined_assembly ? dimeric 2 6 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1 C,D,M 3 1 E,F,N,O 4 1 G,H,P,Q,R 5 1 I,J 6 1 K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 2 "O3'" ? ? ? 1_555 A CBR 3 P ? ? A DG 2 A CBR 3 1_555 ? ? ? ? ? ? ? 1.571 ? ? covale2 covale both ? A CBR 3 "O3'" ? ? ? 1_555 A DG 4 P ? ? A CBR 3 A DG 4 1_555 ? ? ? ? ? ? ? 1.579 ? ? covale3 covale both ? A DA 6 "O3'" ? ? ? 1_555 A FFD 7 P ? ? A DA 6 A FFD 7 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale4 covale both ? A FFD 7 "O3'" ? ? ? 1_555 A DT 8 P ? ? A FFD 7 A DT 8 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale5 covale both ? B DG 2 "O3'" ? ? ? 1_555 B CBR 3 P ? ? B DG 15 B CBR 16 1_555 ? ? ? ? ? ? ? 1.626 ? ? covale6 covale both ? B CBR 3 "O3'" ? ? ? 1_555 B DG 4 P ? ? B CBR 16 B DG 17 1_555 ? ? ? ? ? ? ? 1.579 ? ? covale7 covale both ? B DA 6 "O3'" ? ? ? 1_555 B FFD 7 P ? ? B DA 19 B FFD 20 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale8 covale both ? B FFD 7 "O3'" ? ? ? 1_555 B DT 8 P ? ? B FFD 20 B DT 21 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale9 covale both ? C DG 2 "O3'" ? ? ? 1_555 C CBR 3 P ? ? C DG 2 C CBR 3 1_555 ? ? ? ? ? ? ? 1.582 ? ? covale10 covale both ? C CBR 3 "O3'" ? ? ? 1_555 C DG 4 P ? ? C CBR 3 C DG 4 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale11 covale both ? C DA 6 "O3'" ? ? ? 1_555 C FFD 7 P ? ? C DA 6 C FFD 7 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale12 covale both ? C FFD 7 "O3'" ? ? ? 1_555 C DT 8 P ? ? C FFD 7 C DT 8 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale13 covale both ? D DG 2 "O3'" ? ? ? 1_555 D CBR 3 P ? ? D DG 15 D CBR 16 1_555 ? ? ? ? ? ? ? 1.570 ? ? covale14 covale both ? D CBR 3 "O3'" ? ? ? 1_555 D DG 4 P ? ? D CBR 16 D DG 17 1_555 ? ? ? ? ? ? ? 1.581 ? ? covale15 covale both ? D DA 6 "O3'" ? ? ? 1_555 D FFD 7 P ? ? D DA 19 D FFD 20 1_555 ? ? ? ? ? ? ? 1.585 ? ? covale16 covale both ? D FFD 7 "O3'" ? ? ? 1_555 D DT 8 P ? ? D FFD 20 D DT 21 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale17 covale both ? E DG 2 "O3'" ? ? ? 1_555 E CBR 3 P ? ? E DG 2 E CBR 3 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale18 covale both ? E CBR 3 "O3'" ? ? ? 1_555 E DG 4 P ? ? E CBR 3 E DG 4 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale19 covale both ? E DA 6 "O3'" ? ? ? 1_555 E FFD 7 P ? ? E DA 6 E FFD 7 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale20 covale both ? E FFD 7 "O3'" ? ? ? 1_555 E DT 8 P ? ? E FFD 7 E DT 8 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale21 covale both ? F DG 2 "O3'" ? ? ? 1_555 F CBR 3 P ? ? F DG 15 F CBR 16 1_555 ? ? ? ? ? ? ? 1.528 ? ? covale22 covale both ? F CBR 3 "O3'" ? ? ? 1_555 F DG 4 P ? ? F CBR 16 F DG 17 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale23 covale both ? F DA 6 "O3'" ? ? ? 1_555 F FFD 7 P ? ? F DA 19 F FFD 20 1_555 ? ? ? ? ? ? ? 1.593 ? ? covale24 covale both ? F FFD 7 "O3'" ? ? ? 1_555 F DT 8 P ? ? F FFD 20 F DT 21 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale25 covale both ? G DG 2 "O3'" ? ? ? 1_555 G CBR 3 P ? ? G DG 2 G CBR 3 1_555 ? ? ? ? ? ? ? 1.564 ? ? covale26 covale both ? G CBR 3 "O3'" ? ? ? 1_555 G DG 4 P ? ? G CBR 3 G DG 4 1_555 ? ? ? ? ? ? ? 1.551 ? ? covale27 covale both ? G DA 6 "O3'" ? ? ? 1_555 G FFD 7 P ? ? G DA 6 G FFD 7 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale28 covale both ? G FFD 7 "O3'" ? ? ? 1_555 G DT 8 P ? ? G FFD 7 G DT 8 1_555 ? ? ? ? ? ? ? 1.593 ? ? covale29 covale both ? H DG 2 "O3'" ? ? ? 1_555 H CBR 3 P ? ? H DG 15 H CBR 16 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale30 covale both ? H CBR 3 "O3'" ? ? ? 1_555 H DG 4 P ? ? H CBR 16 H DG 17 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale31 covale both ? H DA 6 "O3'" ? ? ? 1_555 H FFD 7 P ? ? H DA 19 H FFD 20 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale32 covale both ? H FFD 7 "O3'" ? ? ? 1_555 H DT 8 P ? ? H FFD 20 H DT 21 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale33 covale both ? I DG 2 "O3'" ? ? ? 1_555 I CBR 3 P ? ? I DG 2 I CBR 3 1_555 ? ? ? ? ? ? ? 1.593 ? ? covale34 covale both ? I CBR 3 "O3'" ? ? ? 1_555 I DG 4 P ? ? I CBR 3 I DG 4 1_555 ? ? ? ? ? ? ? 1.593 ? ? covale35 covale both ? I DA 6 "O3'" ? ? ? 1_555 I FFD 7 P ? ? I DA 6 I FFD 7 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale36 covale both ? I FFD 7 "O3'" ? ? ? 1_555 I DT 8 P ? ? I FFD 7 I DT 8 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale37 covale both ? J DG 2 "O3'" ? ? ? 1_555 J CBR 3 P ? ? J DG 15 J CBR 16 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale38 covale both ? J CBR 3 "O3'" ? ? ? 1_555 J DG 4 P ? ? J CBR 16 J DG 17 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale39 covale both ? J DA 6 "O3'" ? ? ? 1_555 J FFD 7 P ? ? J DA 19 J FFD 20 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale40 covale both ? J FFD 7 "O3'" ? ? ? 1_555 J DT 8 P ? ? J FFD 20 J DT 21 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale41 covale both ? K DG 2 "O3'" ? ? ? 1_555 K CBR 3 P ? ? K DG 2 K CBR 3 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale42 covale both ? K CBR 3 "O3'" ? ? ? 1_555 K DG 4 P ? ? K CBR 3 K DG 4 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale43 covale both ? K DA 6 "O3'" ? ? ? 1_555 K FFD 7 P ? ? K DA 6 K FFD 7 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale44 covale both ? K FFD 7 "O3'" ? ? ? 1_555 K DT 8 P ? ? K FFD 7 K DT 8 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale45 covale both ? L DG 2 "O3'" ? ? ? 1_555 L CBR 3 P ? ? L DG 15 L CBR 16 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale46 covale both ? L CBR 3 "O3'" ? ? ? 1_555 L DG 4 P ? ? L CBR 16 L DG 17 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale47 covale both ? L DA 6 "O3'" ? ? ? 1_555 L FFD 7 P ? ? L DA 19 L FFD 20 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale48 covale both ? L FFD 7 "O3'" ? ? ? 1_555 L DT 8 P ? ? L FFD 20 L DT 21 1_555 ? ? ? ? ? ? ? 1.594 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 12 N3 ? ? A DG 2 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 12 O2 ? ? A DG 2 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 12 N4 ? ? A DG 2 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A CBR 3 N3 ? ? ? 1_555 B DG 11 N1 ? ? A CBR 3 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A CBR 3 N4 ? ? ? 1_555 B DG 11 O6 ? ? A CBR 3 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A CBR 3 O2 ? ? ? 1_555 B DG 11 N2 ? ? A CBR 3 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 4 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 4 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 4 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 5 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 5 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 6 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 6 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 8 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 8 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 9 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 9 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 10 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 10 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 10 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B CBR 3 N3 ? ? A DG 11 B CBR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B CBR 3 O2 ? ? A DG 11 B CBR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B CBR 3 N4 ? ? A DG 11 B CBR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 12 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 12 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 12 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N4 ? ? ? 1_555 C DC 1 O2 ? ? A DC 12 C DC 1 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog28 hydrog ? ? A DG 13 N2 ? ? ? 1_555 C DG 2 N3 ? ? A DG 13 C DG 2 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog29 hydrog ? ? A DG 13 N3 ? ? ? 1_555 C DG 2 N2 ? ? A DG 13 C DG 2 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog30 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 14 C DG 2 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog31 hydrog ? ? B DG 2 N7 ? ? ? 1_555 C DC 1 N4 ? ? B DG 15 C DC 1 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog32 hydrog ? ? B DG 2 N2 ? ? ? 1_555 D DG 13 N3 ? ? B DG 15 D DG 26 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog33 hydrog ? ? B DG 2 N3 ? ? ? 1_555 D DG 13 N2 ? ? B DG 15 D DG 26 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog34 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 12 N3 ? ? C DG 2 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 12 O2 ? ? C DG 2 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 12 N4 ? ? C DG 2 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C CBR 3 N3 ? ? ? 1_555 D DG 11 N1 ? ? C CBR 3 D DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C CBR 3 N4 ? ? ? 1_555 D DG 11 O6 ? ? C CBR 3 D DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C CBR 3 O2 ? ? ? 1_555 D DG 11 N2 ? ? C CBR 3 D DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 10 N3 ? ? C DG 4 D DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 10 O2 ? ? C DG 4 D DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 10 N4 ? ? C DG 4 D DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 9 O4 ? ? C DA 5 D DT 22 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog44 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 6 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 6 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 8 D DA 19 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog47 hydrog ? ? C DT 9 N3 ? ? ? 1_555 D DA 5 N1 ? ? C DT 9 D DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DT 9 O4 ? ? ? 1_555 D DA 5 N6 ? ? C DT 9 D DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DC 10 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 10 D DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DC 10 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 10 D DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DC 10 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 10 D DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DG 11 N1 ? ? ? 1_555 D CBR 3 N3 ? ? C DG 11 D CBR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DG 11 N2 ? ? ? 1_555 D CBR 3 O2 ? ? C DG 11 D CBR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DG 11 O6 ? ? ? 1_555 D CBR 3 N4 ? ? C DG 11 D CBR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DC 12 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 12 D DG 15 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog56 hydrog ? ? C DG 13 N2 ? ? ? 1_555 F DG 2 N3 ? ? C DG 13 F DG 15 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog57 hydrog ? ? C DG 13 N3 ? ? ? 1_555 F DG 2 N2 ? ? C DG 13 F DG 15 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog58 hydrog ? ? D DG 2 N2 ? ? ? 1_555 E DG 13 N3 ? ? D DG 15 E DG 13 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog59 hydrog ? ? D DG 2 N3 ? ? ? 1_555 E DG 13 N2 ? ? D DG 15 E DG 13 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog60 hydrog ? ? E DC 1 N4 ? ? ? 1_555 H DG 2 N7 ? ? E DC 1 H DG 15 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog61 hydrog ? ? E DG 2 N1 ? ? ? 1_555 F DC 12 N3 ? ? E DG 2 F DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E DG 2 N2 ? ? ? 1_555 F DC 12 O2 ? ? E DG 2 F DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E DG 2 O6 ? ? ? 1_555 F DC 12 N4 ? ? E DG 2 F DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E DG 2 N2 ? ? ? 1_555 G DG 13 N3 ? ? E DG 2 G DG 13 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog65 hydrog ? ? E DG 2 N3 ? ? ? 1_555 G DG 13 N2 ? ? E DG 2 G DG 13 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog66 hydrog ? ? E DG 2 N7 ? ? ? 1_555 H DC 1 N4 ? ? E DG 2 H DC 14 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog67 hydrog ? ? E CBR 3 N3 ? ? ? 1_555 F DG 11 N1 ? ? E CBR 3 F DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? E CBR 3 N4 ? ? ? 1_555 F DG 11 O6 ? ? E CBR 3 F DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? E CBR 3 O2 ? ? ? 1_555 F DG 11 N2 ? ? E CBR 3 F DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E DG 4 N1 ? ? ? 1_555 F DC 10 N3 ? ? E DG 4 F DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E DG 4 N2 ? ? ? 1_555 F DC 10 O2 ? ? E DG 4 F DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? E DG 4 O6 ? ? ? 1_555 F DC 10 N4 ? ? E DG 4 F DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? E DA 5 N1 ? ? ? 1_555 F DT 9 N3 ? ? E DA 5 F DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? E DA 5 N6 ? ? ? 1_555 F DT 9 O4 ? ? E DA 5 F DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? E DA 6 N1 ? ? ? 1_555 F DT 8 N3 ? ? E DA 6 F DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? E DA 6 N6 ? ? ? 1_555 F DT 8 O4 ? ? E DA 6 F DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? E DT 8 N3 ? ? ? 1_555 F DA 6 N1 ? ? E DT 8 F DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? E DT 8 O4 ? ? ? 1_555 F DA 6 N6 ? ? E DT 8 F DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? E DT 9 N3 ? ? ? 1_555 F DA 5 N1 ? ? E DT 9 F DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? E DT 9 O4 ? ? ? 1_555 F DA 5 N6 ? ? E DT 9 F DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? E DC 10 N3 ? ? ? 1_555 F DG 4 N1 ? ? E DC 10 F DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? E DC 10 N4 ? ? ? 1_555 F DG 4 O6 ? ? E DC 10 F DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? E DC 10 O2 ? ? ? 1_555 F DG 4 N2 ? ? E DC 10 F DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? E DG 11 N1 ? ? ? 1_555 F CBR 3 N3 ? ? E DG 11 F CBR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? E DG 11 N2 ? ? ? 1_555 F CBR 3 O2 ? ? E DG 11 F CBR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? E DG 11 O6 ? ? ? 1_555 F CBR 3 N4 ? ? E DG 11 F CBR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? E DC 12 N3 ? ? ? 1_555 F DG 2 N1 ? ? E DC 12 F DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? E DC 12 N4 ? ? ? 1_555 F DG 2 O6 ? ? E DC 12 F DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? E DC 12 O2 ? ? ? 1_555 F DG 2 N2 ? ? E DC 12 F DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? F DC 12 N4 ? ? ? 1_555 H DC 1 O2 ? ? F DC 25 H DC 14 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog91 hydrog ? ? F DG 13 N2 ? ? ? 1_555 H DG 2 N3 ? ? F DG 26 H DG 15 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog92 hydrog ? ? F DG 13 N3 ? ? ? 1_555 H DG 2 N2 ? ? F DG 26 H DG 15 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog93 hydrog ? ? G DG 2 N1 ? ? ? 1_555 H DC 12 N3 ? ? G DG 2 H DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? G DG 2 N2 ? ? ? 1_555 H DC 12 O2 ? ? G DG 2 H DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? G DG 2 O6 ? ? ? 1_555 H DC 12 N4 ? ? G DG 2 H DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? G CBR 3 N3 ? ? ? 1_555 H DG 11 N1 ? ? G CBR 3 H DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? G CBR 3 N4 ? ? ? 1_555 H DG 11 O6 ? ? G CBR 3 H DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? G CBR 3 O2 ? ? ? 1_555 H DG 11 N2 ? ? G CBR 3 H DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? G DG 4 N1 ? ? ? 1_555 H DC 10 N3 ? ? G DG 4 H DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? G DG 4 N2 ? ? ? 1_555 H DC 10 O2 ? ? G DG 4 H DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? G DG 4 O6 ? ? ? 1_555 H DC 10 N4 ? ? G DG 4 H DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? G DA 5 N1 ? ? ? 1_555 H DT 9 N3 ? ? G DA 5 H DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? G DA 5 N6 ? ? ? 1_555 H DT 9 O4 ? ? G DA 5 H DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? G DA 6 N1 ? ? ? 1_555 H DT 8 N3 ? ? G DA 6 H DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? G DA 6 N6 ? ? ? 1_555 H DT 8 O4 ? ? G DA 6 H DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? G DT 8 N3 ? ? ? 1_555 H DA 6 N1 ? ? G DT 8 H DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? G DT 8 O4 ? ? ? 1_555 H DA 6 N6 ? ? G DT 8 H DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? G DT 9 N3 ? ? ? 1_555 H DA 5 N1 ? ? G DT 9 H DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? G DT 9 O4 ? ? ? 1_555 H DA 5 N6 ? ? G DT 9 H DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? G DC 10 N3 ? ? ? 1_555 H DG 4 N1 ? ? G DC 10 H DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? G DC 10 N4 ? ? ? 1_555 H DG 4 O6 ? ? G DC 10 H DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? G DC 10 O2 ? ? ? 1_555 H DG 4 N2 ? ? G DC 10 H DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? G DG 11 N1 ? ? ? 1_555 H CBR 3 N3 ? ? G DG 11 H CBR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? G DG 11 N2 ? ? ? 1_555 H CBR 3 O2 ? ? G DG 11 H CBR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? G DG 11 O6 ? ? ? 1_555 H CBR 3 N4 ? ? G DG 11 H CBR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? G DC 12 O2 ? ? ? 1_555 H DG 2 N2 ? ? G DC 12 H DG 15 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog117 hydrog ? ? I DC 1 O2 ? ? ? 1_555 L CBR 3 N4 ? ? I DC 1 L CBR 16 1_555 ? ? ? ? ? ? 'DC-CBR MISPAIR' ? ? ? hydrog118 hydrog ? ? I DC 1 N4 ? ? ? 1_555 L DG 4 N7 ? ? I DC 1 L DG 17 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog119 hydrog ? ? I DG 2 O6 ? ? ? 1_555 J DC 12 N4 ? ? I DG 2 J DC 25 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog120 hydrog ? ? I CBR 3 N3 ? ? ? 1_555 J DG 11 N1 ? ? I CBR 3 J DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? I CBR 3 N4 ? ? ? 1_555 J DG 11 O6 ? ? I CBR 3 J DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? I CBR 3 O2 ? ? ? 1_555 J DG 11 N2 ? ? I CBR 3 J DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? I DG 4 N1 ? ? ? 1_555 J DC 10 N3 ? ? I DG 4 J DC 23 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog124 hydrog ? ? I DG 4 O6 ? ? ? 1_555 L DC 1 N4 ? ? I DG 4 L DC 14 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog125 hydrog ? ? I DA 5 N1 ? ? ? 1_555 J DT 9 N3 ? ? I DA 5 J DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? I DA 5 N6 ? ? ? 1_555 J DT 9 O4 ? ? I DA 5 J DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? I DA 6 N1 ? ? ? 1_555 J DT 8 N3 ? ? I DA 6 J DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? I DA 6 N6 ? ? ? 1_555 J DT 8 O4 ? ? I DA 6 J DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? I DT 8 O4 ? ? ? 1_555 J DA 5 N6 ? ? I DT 8 J DA 18 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog130 hydrog ? ? I DT 8 N3 ? ? ? 1_555 J DA 6 N1 ? ? I DT 8 J DA 19 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog131 hydrog ? ? I DT 9 N3 ? ? ? 1_555 J DA 5 N1 ? ? I DT 9 J DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? I DT 9 O4 ? ? ? 1_555 J DA 5 N6 ? ? I DT 9 J DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? I DC 10 N3 ? ? ? 1_555 J DG 4 N1 ? ? I DC 10 J DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? I DC 10 N4 ? ? ? 1_555 J DG 4 O6 ? ? I DC 10 J DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? I DC 10 O2 ? ? ? 1_555 J DG 4 N2 ? ? I DC 10 J DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? I DG 11 N1 ? ? ? 1_555 J CBR 3 N3 ? ? I DG 11 J CBR 16 1_555 ? ? ? ? ? ? 'DG-CBR PAIR' ? ? ? hydrog137 hydrog ? ? I DC 12 N3 ? ? ? 1_555 J DG 2 N2 ? ? I DC 12 J DG 15 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog138 hydrog ? ? I DC 12 O2 ? ? ? 1_555 J DG 2 N1 ? ? I DC 12 J DG 15 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog139 hydrog ? ? J DC 10 N4 ? ? ? 1_555 L DC 1 O2 ? ? J DC 23 L DC 14 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog140 hydrog ? ? K CBR 3 N4 ? ? ? 1_555 L DG 11 O6 ? ? K CBR 3 L DG 24 1_555 ? ? ? ? ? ? 'CBR-DG PAIR' ? ? ? hydrog141 hydrog ? ? K DG 4 N1 ? ? ? 1_555 L DC 10 N3 ? ? K DG 4 L DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? K DG 4 N2 ? ? ? 1_555 L DC 10 O2 ? ? K DG 4 L DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? K DG 4 O6 ? ? ? 1_555 L DC 10 N4 ? ? K DG 4 L DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? K DA 5 N1 ? ? ? 1_555 L DT 9 N3 ? ? K DA 5 L DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? K DA 5 N6 ? ? ? 1_555 L DT 9 O4 ? ? K DA 5 L DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? K DA 6 N1 ? ? ? 1_555 L DT 8 N3 ? ? K DA 6 L DT 21 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog147 hydrog ? ? K DT 8 N3 ? ? ? 1_555 L DA 6 N1 ? ? K DT 8 L DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? K DT 8 O4 ? ? ? 1_555 L DA 6 N6 ? ? K DT 8 L DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? K DT 9 N3 ? ? ? 1_555 L DA 5 N1 ? ? K DT 9 L DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? K DT 9 O4 ? ? ? 1_555 L DA 5 N6 ? ? K DT 9 L DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? K DC 10 N3 ? ? ? 1_555 L DG 4 N1 ? ? K DC 10 L DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? K DC 10 N4 ? ? ? 1_555 L DG 4 O6 ? ? K DC 10 L DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? K DC 10 O2 ? ? ? 1_555 L DG 4 N2 ? ? K DC 10 L DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog154 hydrog ? ? K DG 11 O6 ? ? ? 1_555 L CBR 3 N4 ? ? K DG 11 L CBR 16 1_555 ? ? ? ? ? ? 'DG-CBR PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N4 G DC 12 ? ? O6 H DG 15 ? ? 1.97 2 1 O2 I DC 12 ? ? N2 J DG 15 ? ? 2.06 3 1 C5 B DC 14 ? ? O6 C DG 2 ? ? 2.13 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O6 A DG 4 ? ? 1_555 C5 G DC 1 ? ? 8_657 2.09 2 1 C5 F DC 14 ? ? 1_555 O6 F DG 17 ? ? 16_556 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.368 1.419 -0.051 0.006 N 2 1 "O3'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.347 1.419 -0.072 0.006 N 3 1 "O3'" B DG 17 ? ? "C3'" B DG 17 ? ? 1.380 1.419 -0.039 0.006 N 4 1 "O3'" B DG 24 ? ? "C3'" B DG 24 ? ? 1.362 1.419 -0.057 0.006 N 5 1 C2 C DG 4 ? ? N3 C DG 4 ? ? 1.375 1.323 0.052 0.008 N 6 1 "O3'" C DT 8 ? ? "C3'" C DT 8 ? ? 1.353 1.419 -0.066 0.006 N 7 1 "O3'" C DG 11 ? ? "C3'" C DG 11 ? ? 1.340 1.419 -0.079 0.006 N 8 1 "O3'" E DG 11 ? ? "C3'" E DG 11 ? ? 1.376 1.419 -0.043 0.006 N 9 1 "O3'" F DC 14 ? ? "C3'" F DC 14 ? ? 1.379 1.419 -0.040 0.006 N 10 1 "O3'" F DG 15 ? ? "C3'" F DG 15 ? ? 1.323 1.419 -0.096 0.006 N 11 1 "O3'" F DG 15 ? ? P F CBR 16 ? ? 1.528 1.607 -0.079 0.012 Y 12 1 C2 F DG 24 ? ? N3 F DG 24 ? ? 1.373 1.323 0.050 0.008 N 13 1 "O3'" G DC 1 ? ? "C3'" G DC 1 ? ? 1.365 1.419 -0.054 0.006 N 14 1 "O3'" G DG 2 ? ? "C3'" G DG 2 ? ? 1.373 1.419 -0.046 0.006 N 15 1 "O3'" G DG 4 ? ? "C3'" G DG 4 ? ? 1.355 1.419 -0.064 0.006 N 16 1 "O3'" G DA 6 ? ? "C3'" G DA 6 ? ? 1.376 1.419 -0.043 0.006 N 17 1 "O3'" H DA 18 ? ? "C3'" H DA 18 ? ? 1.370 1.419 -0.049 0.006 N 18 1 "O3'" J DT 22 ? ? "C3'" J DT 22 ? ? 1.380 1.419 -0.039 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.16 108.30 2.86 0.30 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 102.60 108.00 -5.40 0.70 N 3 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.83 108.30 4.53 0.30 N 4 1 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 110.17 108.30 1.87 0.30 N 5 1 "C3'" B DG 24 ? ? "C2'" B DG 24 ? ? "C1'" B DG 24 ? ? 97.39 102.40 -5.01 0.80 N 6 1 "O4'" C DG 4 ? ? "C1'" C DG 4 ? ? N9 C DG 4 ? ? 110.74 108.30 2.44 0.30 N 7 1 "O4'" C DG 11 ? ? "C1'" C DG 11 ? ? N9 C DG 11 ? ? 111.93 108.30 3.63 0.30 N 8 1 "O4'" D DG 17 ? ? "C1'" D DG 17 ? ? N9 D DG 17 ? ? 110.12 108.30 1.82 0.30 N 9 1 "C1'" D DA 19 ? ? "O4'" D DA 19 ? ? "C4'" D DA 19 ? ? 100.28 110.10 -9.82 1.00 N 10 1 "O4'" D DA 19 ? ? "C1'" D DA 19 ? ? N9 D DA 19 ? ? 113.78 108.30 5.48 0.30 N 11 1 "O4'" D DG 24 ? ? "C1'" D DG 24 ? ? N9 D DG 24 ? ? 110.70 108.30 2.40 0.30 N 12 1 "O4'" E DG 4 ? ? "C1'" E DG 4 ? ? N9 E DG 4 ? ? 111.45 108.30 3.15 0.30 N 13 1 "O4'" E DT 8 ? ? "C4'" E DT 8 ? ? "C3'" E DT 8 ? ? 101.92 104.50 -2.58 0.40 N 14 1 "O4'" F DA 19 ? ? "C1'" F DA 19 ? ? N9 F DA 19 ? ? 110.47 108.30 2.17 0.30 N 15 1 "O4'" F DG 24 ? ? "C1'" F DG 24 ? ? N9 F DG 24 ? ? 113.20 108.30 4.90 0.30 N 16 1 "O4'" G DG 4 ? ? "C1'" G DG 4 ? ? N9 G DG 4 ? ? 113.65 108.30 5.35 0.30 N 17 1 "C3'" G DA 6 ? ? "C2'" G DA 6 ? ? "C1'" G DA 6 ? ? 97.56 102.40 -4.84 0.80 N 18 1 "O4'" G DT 9 ? ? "C1'" G DT 9 ? ? N1 G DT 9 ? ? 112.19 108.30 3.89 0.30 N 19 1 "O4'" G DC 12 ? ? "C1'" G DC 12 ? ? N1 G DC 12 ? ? 110.18 108.30 1.88 0.30 N 20 1 "C1'" H DG 17 ? ? "O4'" H DG 17 ? ? "C4'" H DG 17 ? ? 103.64 110.10 -6.46 1.00 N 21 1 "O4'" H DG 17 ? ? "C1'" H DG 17 ? ? N9 H DG 17 ? ? 114.60 108.30 6.30 0.30 N 22 1 "O4'" H DA 19 ? ? "C1'" H DA 19 ? ? N9 H DA 19 ? ? 110.75 108.30 2.45 0.30 N 23 1 "O4'" I DA 5 ? ? "C1'" I DA 5 ? ? N9 I DA 5 ? ? 111.96 108.30 3.66 0.30 N 24 1 "O4'" I DT 9 ? ? "C1'" I DT 9 ? ? N1 I DT 9 ? ? 111.17 108.30 2.87 0.30 N 25 1 "O4'" I DC 10 ? ? "C1'" I DC 10 ? ? N1 I DC 10 ? ? 110.64 108.30 2.34 0.30 N 26 1 "O4'" I DG 11 ? ? "C1'" I DG 11 ? ? N9 I DG 11 ? ? 111.35 108.30 3.05 0.30 N 27 1 "O4'" J DT 22 ? ? "C1'" J DT 22 ? ? N1 J DT 22 ? ? 110.35 108.30 2.05 0.30 N 28 1 "O4'" J DG 24 ? ? "C1'" J DG 24 ? ? N9 J DG 24 ? ? 110.67 108.30 2.37 0.30 N 29 1 "O4'" K DT 8 ? ? "C1'" K DT 8 ? ? N1 K DT 8 ? ? 110.37 108.30 2.07 0.30 N 30 1 "O4'" L DG 17 ? ? "C1'" L DG 17 ? ? N9 L DG 17 ? ? 110.17 108.30 1.87 0.30 N 31 1 "O4'" L DA 18 ? ? "C1'" L DA 18 ? ? N9 L DA 18 ? ? 110.80 108.30 2.50 0.30 N 32 1 "O4'" L DA 19 ? ? "C1'" L DA 19 ? ? N9 L DA 19 ? ? 110.92 108.30 2.62 0.30 N 33 1 "O4'" L DC 25 ? ? "C1'" L DC 25 ? ? N1 L DC 25 ? ? 111.38 108.30 3.08 0.30 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CBR 3 A CBR 3 ? DC ? 2 B CBR 3 B CBR 16 ? DC ? 3 C CBR 3 C CBR 3 ? DC ? 4 D CBR 3 D CBR 16 ? DC ? 5 E CBR 3 E CBR 3 ? DC ? 6 F CBR 3 F CBR 16 ? DC ? 7 G CBR 3 G CBR 3 ? DC ? 8 H CBR 3 H CBR 16 ? DC ? 9 I CBR 3 I CBR 3 ? DC ? 10 J CBR 3 J CBR 16 ? DC ? 11 K CBR 3 K CBR 3 ? DC ? 12 L CBR 3 L CBR 16 ? DC ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CBR BR BR N N 1 CBR P P N N 2 CBR OP1 O N N 3 CBR OP2 O N N 4 CBR "O5'" O N N 5 CBR N1 N N N 6 CBR C6 C N N 7 CBR C2 C N N 8 CBR O2 O N N 9 CBR N3 N N N 10 CBR C4 C N N 11 CBR N4 N N N 12 CBR C5 C N N 13 CBR "C2'" C N N 14 CBR "C5'" C N N 15 CBR "C4'" C N R 16 CBR "O4'" O N N 17 CBR "C1'" C N R 18 CBR "C3'" C N S 19 CBR "O3'" O N N 20 CBR OP3 O N N 21 CBR HOP2 H N N 22 CBR H6 H N N 23 CBR H41 H N N 24 CBR H42 H N N 25 CBR "H2'" H N N 26 CBR "H2''" H N N 27 CBR "H5'" H N N 28 CBR "H5''" H N N 29 CBR "H4'" H N N 30 CBR "H1'" H N N 31 CBR "H3'" H N N 32 CBR "HO3'" H N N 33 CBR HOP3 H N N 34 DA OP3 O N N 35 DA P P N N 36 DA OP1 O N N 37 DA OP2 O N N 38 DA "O5'" O N N 39 DA "C5'" C N N 40 DA "C4'" C N R 41 DA "O4'" O N N 42 DA "C3'" C N S 43 DA "O3'" O N N 44 DA "C2'" C N N 45 DA "C1'" C N R 46 DA N9 N Y N 47 DA C8 C Y N 48 DA N7 N Y N 49 DA C5 C Y N 50 DA C6 C Y N 51 DA N6 N N N 52 DA N1 N Y N 53 DA C2 C Y N 54 DA N3 N Y N 55 DA C4 C Y N 56 DA HOP3 H N N 57 DA HOP2 H N N 58 DA "H5'" H N N 59 DA "H5''" H N N 60 DA "H4'" H N N 61 DA "H3'" H N N 62 DA "HO3'" H N N 63 DA "H2'" H N N 64 DA "H2''" H N N 65 DA "H1'" H N N 66 DA H8 H N N 67 DA H61 H N N 68 DA H62 H N N 69 DA H2 H N N 70 DC OP3 O N N 71 DC P P N N 72 DC OP1 O N N 73 DC OP2 O N N 74 DC "O5'" O N N 75 DC "C5'" C N N 76 DC "C4'" C N R 77 DC "O4'" O N N 78 DC "C3'" C N S 79 DC "O3'" O N N 80 DC "C2'" C N N 81 DC "C1'" C N R 82 DC N1 N N N 83 DC C2 C N N 84 DC O2 O N N 85 DC N3 N N N 86 DC C4 C N N 87 DC N4 N N N 88 DC C5 C N N 89 DC C6 C N N 90 DC HOP3 H N N 91 DC HOP2 H N N 92 DC "H5'" H N N 93 DC "H5''" H N N 94 DC "H4'" H N N 95 DC "H3'" H N N 96 DC "HO3'" H N N 97 DC "H2'" H N N 98 DC "H2''" H N N 99 DC "H1'" H N N 100 DC H41 H N N 101 DC H42 H N N 102 DC H5 H N N 103 DC H6 H N N 104 DG OP3 O N N 105 DG P P N N 106 DG OP1 O N N 107 DG OP2 O N N 108 DG "O5'" O N N 109 DG "C5'" C N N 110 DG "C4'" C N R 111 DG "O4'" O N N 112 DG "C3'" C N S 113 DG "O3'" O N N 114 DG "C2'" C N N 115 DG "C1'" C N R 116 DG N9 N Y N 117 DG C8 C Y N 118 DG N7 N Y N 119 DG C5 C Y N 120 DG C6 C N N 121 DG O6 O N N 122 DG N1 N N N 123 DG C2 C N N 124 DG N2 N N N 125 DG N3 N N N 126 DG C4 C Y N 127 DG HOP3 H N N 128 DG HOP2 H N N 129 DG "H5'" H N N 130 DG "H5''" H N N 131 DG "H4'" H N N 132 DG "H3'" H N N 133 DG "HO3'" H N N 134 DG "H2'" H N N 135 DG "H2''" H N N 136 DG "H1'" H N N 137 DG H8 H N N 138 DG H1 H N N 139 DG H21 H N N 140 DG H22 H N N 141 DT OP3 O N N 142 DT P P N N 143 DT OP1 O N N 144 DT OP2 O N N 145 DT "O5'" O N N 146 DT "C5'" C N N 147 DT "C4'" C N R 148 DT "O4'" O N N 149 DT "C3'" C N S 150 DT "O3'" O N N 151 DT "C2'" C N N 152 DT "C1'" C N R 153 DT N1 N N N 154 DT C2 C N N 155 DT O2 O N N 156 DT N3 N N N 157 DT C4 C N N 158 DT O4 O N N 159 DT C5 C N N 160 DT C7 C N N 161 DT C6 C N N 162 DT HOP3 H N N 163 DT HOP2 H N N 164 DT "H5'" H N N 165 DT "H5''" H N N 166 DT "H4'" H N N 167 DT "H3'" H N N 168 DT "HO3'" H N N 169 DT "H2'" H N N 170 DT "H2''" H N N 171 DT "H1'" H N N 172 DT H3 H N N 173 DT H71 H N N 174 DT H72 H N N 175 DT H73 H N N 176 DT H6 H N N 177 FFD O3P O N N 178 FFD C C Y N 179 FFD C1 C Y N 180 FFD F F N N 181 FFD C3 C Y N 182 FFD C4 C Y N 183 FFD C5 C Y N 184 FFD C6 C Y N 185 FFD "C1'" C N R 186 FFD "O4'" O N N 187 FFD "C2'" C N N 188 FFD "C3'" C N S 189 FFD "O3'" O N N 190 FFD "C4'" C N R 191 FFD "C5'" C N N 192 FFD "O5'" O N N 193 FFD P P N N 194 FFD O2P O N N 195 FFD O1P O N N 196 FFD HOP3 H N N 197 FFD H H N N 198 FFD H3 H N N 199 FFD H4 H N N 200 FFD H5 H N N 201 FFD "H1'" H N N 202 FFD "H2'1" H N N 203 FFD "H2'2" H N N 204 FFD "H3'" H N N 205 FFD H3T H N N 206 FFD "H4'" H N N 207 FFD "H5'1" H N N 208 FFD "H5'2" H N N 209 FFD HOP2 H N N 210 MG MG MG N N 211 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CBR BR C5 sing N N 1 CBR P OP1 doub N N 2 CBR P OP2 sing N N 3 CBR P "O5'" sing N N 4 CBR P OP3 sing N N 5 CBR OP2 HOP2 sing N N 6 CBR "O5'" "C5'" sing N N 7 CBR N1 C6 sing N N 8 CBR N1 C2 sing N N 9 CBR N1 "C1'" sing N N 10 CBR C6 C5 doub N N 11 CBR C6 H6 sing N N 12 CBR C2 O2 doub N N 13 CBR C2 N3 sing N N 14 CBR N3 C4 doub N N 15 CBR C4 N4 sing N N 16 CBR C4 C5 sing N N 17 CBR N4 H41 sing N N 18 CBR N4 H42 sing N N 19 CBR "C2'" "C1'" sing N N 20 CBR "C2'" "C3'" sing N N 21 CBR "C2'" "H2'" sing N N 22 CBR "C2'" "H2''" sing N N 23 CBR "C5'" "C4'" sing N N 24 CBR "C5'" "H5'" sing N N 25 CBR "C5'" "H5''" sing N N 26 CBR "C4'" "O4'" sing N N 27 CBR "C4'" "C3'" sing N N 28 CBR "C4'" "H4'" sing N N 29 CBR "O4'" "C1'" sing N N 30 CBR "C1'" "H1'" sing N N 31 CBR "C3'" "O3'" sing N N 32 CBR "C3'" "H3'" sing N N 33 CBR "O3'" "HO3'" sing N N 34 CBR OP3 HOP3 sing N N 35 DA OP3 P sing N N 36 DA OP3 HOP3 sing N N 37 DA P OP1 doub N N 38 DA P OP2 sing N N 39 DA P "O5'" sing N N 40 DA OP2 HOP2 sing N N 41 DA "O5'" "C5'" sing N N 42 DA "C5'" "C4'" sing N N 43 DA "C5'" "H5'" sing N N 44 DA "C5'" "H5''" sing N N 45 DA "C4'" "O4'" sing N N 46 DA "C4'" "C3'" sing N N 47 DA "C4'" "H4'" sing N N 48 DA "O4'" "C1'" sing N N 49 DA "C3'" "O3'" sing N N 50 DA "C3'" "C2'" sing N N 51 DA "C3'" "H3'" sing N N 52 DA "O3'" "HO3'" sing N N 53 DA "C2'" "C1'" sing N N 54 DA "C2'" "H2'" sing N N 55 DA "C2'" "H2''" sing N N 56 DA "C1'" N9 sing N N 57 DA "C1'" "H1'" sing N N 58 DA N9 C8 sing Y N 59 DA N9 C4 sing Y N 60 DA C8 N7 doub Y N 61 DA C8 H8 sing N N 62 DA N7 C5 sing Y N 63 DA C5 C6 sing Y N 64 DA C5 C4 doub Y N 65 DA C6 N6 sing N N 66 DA C6 N1 doub Y N 67 DA N6 H61 sing N N 68 DA N6 H62 sing N N 69 DA N1 C2 sing Y N 70 DA C2 N3 doub Y N 71 DA C2 H2 sing N N 72 DA N3 C4 sing Y N 73 DC OP3 P sing N N 74 DC OP3 HOP3 sing N N 75 DC P OP1 doub N N 76 DC P OP2 sing N N 77 DC P "O5'" sing N N 78 DC OP2 HOP2 sing N N 79 DC "O5'" "C5'" sing N N 80 DC "C5'" "C4'" sing N N 81 DC "C5'" "H5'" sing N N 82 DC "C5'" "H5''" sing N N 83 DC "C4'" "O4'" sing N N 84 DC "C4'" "C3'" sing N N 85 DC "C4'" "H4'" sing N N 86 DC "O4'" "C1'" sing N N 87 DC "C3'" "O3'" sing N N 88 DC "C3'" "C2'" sing N N 89 DC "C3'" "H3'" sing N N 90 DC "O3'" "HO3'" sing N N 91 DC "C2'" "C1'" sing N N 92 DC "C2'" "H2'" sing N N 93 DC "C2'" "H2''" sing N N 94 DC "C1'" N1 sing N N 95 DC "C1'" "H1'" sing N N 96 DC N1 C2 sing N N 97 DC N1 C6 sing N N 98 DC C2 O2 doub N N 99 DC C2 N3 sing N N 100 DC N3 C4 doub N N 101 DC C4 N4 sing N N 102 DC C4 C5 sing N N 103 DC N4 H41 sing N N 104 DC N4 H42 sing N N 105 DC C5 C6 doub N N 106 DC C5 H5 sing N N 107 DC C6 H6 sing N N 108 DG OP3 P sing N N 109 DG OP3 HOP3 sing N N 110 DG P OP1 doub N N 111 DG P OP2 sing N N 112 DG P "O5'" sing N N 113 DG OP2 HOP2 sing N N 114 DG "O5'" "C5'" sing N N 115 DG "C5'" "C4'" sing N N 116 DG "C5'" "H5'" sing N N 117 DG "C5'" "H5''" sing N N 118 DG "C4'" "O4'" sing N N 119 DG "C4'" "C3'" sing N N 120 DG "C4'" "H4'" sing N N 121 DG "O4'" "C1'" sing N N 122 DG "C3'" "O3'" sing N N 123 DG "C3'" "C2'" sing N N 124 DG "C3'" "H3'" sing N N 125 DG "O3'" "HO3'" sing N N 126 DG "C2'" "C1'" sing N N 127 DG "C2'" "H2'" sing N N 128 DG "C2'" "H2''" sing N N 129 DG "C1'" N9 sing N N 130 DG "C1'" "H1'" sing N N 131 DG N9 C8 sing Y N 132 DG N9 C4 sing Y N 133 DG C8 N7 doub Y N 134 DG C8 H8 sing N N 135 DG N7 C5 sing Y N 136 DG C5 C6 sing N N 137 DG C5 C4 doub Y N 138 DG C6 O6 doub N N 139 DG C6 N1 sing N N 140 DG N1 C2 sing N N 141 DG N1 H1 sing N N 142 DG C2 N2 sing N N 143 DG C2 N3 doub N N 144 DG N2 H21 sing N N 145 DG N2 H22 sing N N 146 DG N3 C4 sing N N 147 DT OP3 P sing N N 148 DT OP3 HOP3 sing N N 149 DT P OP1 doub N N 150 DT P OP2 sing N N 151 DT P "O5'" sing N N 152 DT OP2 HOP2 sing N N 153 DT "O5'" "C5'" sing N N 154 DT "C5'" "C4'" sing N N 155 DT "C5'" "H5'" sing N N 156 DT "C5'" "H5''" sing N N 157 DT "C4'" "O4'" sing N N 158 DT "C4'" "C3'" sing N N 159 DT "C4'" "H4'" sing N N 160 DT "O4'" "C1'" sing N N 161 DT "C3'" "O3'" sing N N 162 DT "C3'" "C2'" sing N N 163 DT "C3'" "H3'" sing N N 164 DT "O3'" "HO3'" sing N N 165 DT "C2'" "C1'" sing N N 166 DT "C2'" "H2'" sing N N 167 DT "C2'" "H2''" sing N N 168 DT "C1'" N1 sing N N 169 DT "C1'" "H1'" sing N N 170 DT N1 C2 sing N N 171 DT N1 C6 sing N N 172 DT C2 O2 doub N N 173 DT C2 N3 sing N N 174 DT N3 C4 sing N N 175 DT N3 H3 sing N N 176 DT C4 O4 doub N N 177 DT C4 C5 sing N N 178 DT C5 C7 sing N N 179 DT C5 C6 doub N N 180 DT C7 H71 sing N N 181 DT C7 H72 sing N N 182 DT C7 H73 sing N N 183 DT C6 H6 sing N N 184 FFD O1P P doub N N 185 FFD P O3P sing N N 186 FFD P O2P sing N N 187 FFD P "O5'" sing N N 188 FFD F C1 sing N N 189 FFD "O5'" "C5'" sing N N 190 FFD C1 C doub Y N 191 FFD C1 C3 sing Y N 192 FFD C C6 sing Y N 193 FFD C3 C4 doub Y N 194 FFD "C5'" "C4'" sing N N 195 FFD "O4'" "C4'" sing N N 196 FFD "O4'" "C1'" sing N N 197 FFD C6 "C1'" sing N N 198 FFD C6 C5 doub Y N 199 FFD "C3'" "C4'" sing N N 200 FFD "C3'" "C2'" sing N N 201 FFD "C3'" "O3'" sing N N 202 FFD C4 C5 sing Y N 203 FFD "C2'" "C1'" sing N N 204 FFD O3P HOP3 sing N N 205 FFD C H sing N N 206 FFD C3 H3 sing N N 207 FFD C4 H4 sing N N 208 FFD C5 H5 sing N N 209 FFD "C1'" "H1'" sing N N 210 FFD "C2'" "H2'1" sing N N 211 FFD "C2'" "H2'2" sing N N 212 FFD "C3'" "H3'" sing N N 213 FFD "O3'" H3T sing N N 214 FFD "C4'" "H4'" sing N N 215 FFD "C5'" "H5'1" sing N N 216 FFD "C5'" "H5'2" sing N N 217 FFD O2P HOP2 sing N N 218 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2PIS 'double helix' 2PIS 'b-form double helix' 2PIS 'mismatched base pair' 2PIS 'triple helix' 2PIS 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 12 1_555 0.185 -0.258 0.090 -11.080 -3.295 -6.084 1 A_DG2:DC25_B A 2 ? B 25 ? 19 1 1 A CBR 3 1_555 B DG 11 1_555 -0.228 -0.101 0.090 -2.021 9.294 -5.902 2 A_CBR3:DG24_B A 3 ? B 24 ? 19 1 1 A DG 4 1_555 B DC 10 1_555 0.490 -0.134 0.255 16.414 1.859 -0.577 3 A_DG4:DC23_B A 4 ? B 23 ? 19 1 1 A DA 5 1_555 B DT 9 1_555 0.579 -0.239 0.474 4.951 -7.409 -3.420 4 A_DA5:DT22_B A 5 ? B 22 ? 20 1 1 A DA 6 1_555 B DT 8 1_555 0.333 -0.318 0.111 1.937 -19.802 9.414 5 A_DA6:DT21_B A 6 ? B 21 ? 20 1 1 A DT 8 1_555 B DA 6 1_555 -0.312 -0.481 -0.130 -5.223 -13.925 9.315 6 A_DT8:DA19_B A 8 ? B 19 ? 20 1 1 A DT 9 1_555 B DA 5 1_555 0.479 -0.552 0.093 -8.202 -7.354 -1.775 7 A_DT9:DA18_B A 9 ? B 18 ? 20 1 1 A DC 10 1_555 B DG 4 1_555 0.500 -0.665 -0.086 -8.085 -6.807 -3.719 8 A_DC10:DG17_B A 10 ? B 17 ? 19 1 1 A DG 11 1_555 B CBR 3 1_555 0.693 -0.286 0.129 3.896 6.745 -4.158 9 A_DG11:CBR16_B A 11 ? B 16 ? 19 1 1 A DC 12 1_555 B DG 2 1_555 -0.636 -0.139 -0.062 4.458 -3.226 -1.441 10 A_DC12:DG15_B A 12 ? B 15 ? 19 1 1 C DG 2 1_555 D DC 12 1_555 -0.259 -0.395 0.065 -8.833 -4.883 -1.023 11 C_DG2:DC25_D C 2 ? D 25 ? 19 1 1 C CBR 3 1_555 D DG 11 1_555 -0.763 -0.496 0.316 -9.864 2.929 -8.420 12 C_CBR3:DG24_D C 3 ? D 24 ? 19 1 1 C DG 4 1_555 D DC 10 1_555 -0.433 -0.725 -0.106 5.636 -3.050 -2.420 13 C_DG4:DC23_D C 4 ? D 23 ? 19 1 1 C DA 5 1_555 D DT 9 1_555 0.095 -2.181 -0.358 7.175 3.978 90.612 14 C_DA5:DT22_D C 5 ? D 22 ? ? ? 1 C DA 6 1_555 D DT 8 1_555 0.774 -0.246 0.159 13.228 -6.050 9.850 15 C_DA6:DT21_D C 6 ? D 21 ? 20 1 1 C DT 8 1_555 D DA 6 1_555 0.264 2.053 0.532 -6.365 -5.127 -101.676 16 C_DT8:DA19_D C 8 ? D 19 ? ? ? 1 C DT 9 1_555 D DA 5 1_555 0.026 -0.565 0.230 -11.669 -16.665 -4.540 17 C_DT9:DA18_D C 9 ? D 18 ? 20 1 1 C DC 10 1_555 D DG 4 1_555 -0.008 -0.425 0.464 -12.228 -0.230 1.990 18 C_DC10:DG17_D C 10 ? D 17 ? 19 1 1 C DG 11 1_555 D CBR 3 1_555 0.423 -0.224 -0.180 -1.633 7.663 -3.181 19 C_DG11:CBR16_D C 11 ? D 16 ? 19 1 1 C DC 12 1_555 D DG 2 1_555 0.211 0.405 -0.008 14.704 -3.130 6.451 20 C_DC12:DG15_D C 12 ? D 15 ? ? 1 1 F DG 2 1_555 E DC 12 1_555 0.699 -0.268 0.343 -5.067 4.373 -2.722 21 F_DG15:DC12_E F 15 ? E 12 ? 19 1 1 F CBR 3 1_555 E DG 11 1_555 0.308 0.048 0.170 -3.953 4.610 0.350 22 F_CBR16:DG11_E F 16 ? E 11 ? 19 1 1 F DG 4 1_555 E DC 10 1_555 0.525 -0.182 0.023 11.500 -7.316 1.577 23 F_DG17:DC10_E F 17 ? E 10 ? 19 1 1 F DA 5 1_555 E DT 9 1_555 0.404 -0.214 0.166 4.573 -6.188 5.804 24 F_DA18:DT9_E F 18 ? E 9 ? 20 1 1 F DA 6 1_555 E DT 8 1_555 0.041 -0.357 -0.230 0.624 -18.110 0.891 25 F_DA19:DT8_E F 19 ? E 8 ? 20 1 1 F DT 8 1_555 E DA 6 1_555 -0.443 -0.411 0.017 -3.503 0.756 0.371 26 F_DT21:DA6_E F 21 ? E 6 ? 20 1 1 F DT 9 1_555 E DA 5 1_555 -0.099 0.001 0.377 -11.308 -7.561 4.728 27 F_DT22:DA5_E F 22 ? E 5 ? 20 1 1 F DC 10 1_555 E DG 4 1_555 1.506 -0.698 0.075 -14.486 -1.360 -7.732 28 F_DC23:DG4_E F 23 ? E 4 ? 19 1 1 F DG 11 1_555 E CBR 3 1_555 1.340 -0.297 -0.132 5.459 8.566 -15.364 29 F_DG24:CBR3_E F 24 ? E 3 ? 19 1 1 F DC 12 1_555 E DG 2 1_555 0.325 -0.538 0.226 6.659 0.075 0.108 30 F_DC25:DG2_E F 25 ? E 2 ? 19 1 1 H DG 2 1_555 G DC 12 1_555 0.079 -0.607 0.271 -6.303 0.589 -15.685 31 H_DG15:DC12_G H 15 ? G 12 ? ? 1 1 H CBR 3 1_555 G DG 11 1_555 -0.638 -0.425 0.771 -13.253 12.025 -4.277 32 H_CBR16:DG11_G H 16 ? G 11 ? 19 1 1 H DG 4 1_555 G DC 10 1_555 -0.718 -0.578 -0.168 7.538 -1.414 -1.195 33 H_DG17:DC10_G H 17 ? G 10 ? 19 1 1 H DA 5 1_555 G DT 9 1_555 0.074 -0.405 -0.085 5.712 -8.125 -1.431 34 H_DA18:DT9_G H 18 ? G 9 ? 20 1 1 H DA 6 1_555 G DT 8 1_555 -0.181 -0.595 -0.029 9.132 -7.185 5.122 35 H_DA19:DT8_G H 19 ? G 8 ? 20 1 1 H DT 8 1_555 G DA 6 1_555 0.703 -0.169 0.026 -3.558 -15.599 0.140 36 H_DT21:DA6_G H 21 ? G 6 ? 20 1 1 H DT 9 1_555 G DA 5 1_555 -0.338 -0.197 0.292 -9.805 -13.001 -2.028 37 H_DT22:DA5_G H 22 ? G 5 ? 20 1 1 H DC 10 1_555 G DG 4 1_555 -0.439 -0.037 0.160 -14.018 1.819 2.042 38 H_DC23:DG4_G H 23 ? G 4 ? 19 1 1 H DG 11 1_555 G CBR 3 1_555 0.475 -0.084 0.031 1.800 6.101 0.311 39 H_DG24:CBR3_G H 24 ? G 3 ? 19 1 1 H DC 12 1_555 G DG 2 1_555 -0.206 -0.168 -0.305 12.827 -0.915 -3.604 40 H_DC25:DG2_G H 25 ? G 2 ? 19 1 1 I DG 2 1_555 J DC 12 1_555 0.349 5.136 0.422 -16.343 -1.726 -80.795 41 I_DG2:DC25_J I 2 ? J 25 ? ? ? 1 I CBR 3 1_555 J DG 11 1_555 0.279 -0.103 -0.567 11.246 11.720 3.298 42 I_CBR3:DG24_J I 3 ? J 24 ? 19 1 1 I DG 4 1_555 J DC 10 1_555 0.090 0.497 0.138 29.464 -8.735 7.837 43 I_DG4:DC23_J I 4 ? J 23 ? ? 1 1 I DA 5 1_555 J DT 9 1_555 0.261 -0.284 0.161 15.531 -22.627 -14.255 44 I_DA5:DT22_J I 5 ? J 22 ? 20 1 1 I DA 6 1_555 J DT 8 1_555 -0.084 -0.366 0.701 11.268 -31.376 6.951 45 I_DA6:DT21_J I 6 ? J 21 ? 20 1 1 I DT 8 1_555 J DA 6 1_555 0.630 0.257 0.851 -23.528 1.005 19.605 46 I_DT8:DA19_J I 8 ? J 19 ? ? 1 1 I DT 9 1_555 J DA 5 1_555 -1.081 -0.308 1.311 -29.683 -1.412 -2.185 47 I_DT9:DA18_J I 9 ? J 18 ? 20 1 1 I DC 10 1_555 J DG 4 1_555 0.200 -0.363 -0.335 0.295 -10.044 -5.050 48 I_DC10:DG17_J I 10 ? J 17 ? 19 1 1 I DG 11 1_555 J CBR 3 1_555 1.416 -0.613 -1.591 -20.722 -30.152 -13.154 49 I_DG11:CBR16_J I 11 ? J 16 ? ? 1 1 I DC 12 1_555 J DG 2 1_555 0.312 -0.613 -0.626 8.128 -12.675 9.973 50 I_DC12:DG15_J I 12 ? J 15 ? 22 1 1 K CBR 3 1_555 L DG 11 1_555 -0.584 0.678 1.021 -33.947 11.035 -10.964 51 K_CBR3:DG24_L K 3 ? L 24 ? ? ? 1 K DG 4 1_555 L DC 10 1_555 -1.249 -0.239 -0.725 -3.108 -13.832 13.450 52 K_DG4:DC23_L K 4 ? L 23 ? 19 1 1 K DA 5 1_555 L DT 9 1_555 0.449 -0.606 -0.662 -6.135 -14.369 -4.944 53 K_DA5:DT22_L K 5 ? L 22 ? 20 1 1 K DA 6 1_555 L DT 8 1_555 -0.771 0.270 0.019 17.275 -32.000 -2.466 54 K_DA6:DT21_L K 6 ? L 21 ? ? ? 1 K DT 8 1_555 L DA 6 1_555 -0.840 -0.492 1.025 -0.661 -23.004 -0.661 55 K_DT8:DA19_L K 8 ? L 19 ? 20 1 1 K DT 9 1_555 L DA 5 1_555 -0.234 0.145 0.879 -31.755 -31.800 -7.446 56 K_DT9:DA18_L K 9 ? L 18 ? 20 1 1 K DC 10 1_555 L DG 4 1_555 -0.587 0.168 0.556 -14.894 -15.243 -2.483 57 K_DC10:DG17_L K 10 ? L 17 ? 19 1 1 K DG 11 1_555 L CBR 3 1_555 -0.041 -2.007 -0.558 10.617 -12.217 114.507 58 K_DG11:CBR16_L K 11 ? L 16 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 12 1_555 A CBR 3 1_555 B DG 11 1_555 0.988 0.185 3.191 -2.206 -3.796 31.409 1.010 -2.199 3.073 -6.969 4.049 31.707 1 AA_DG2CBR3:DG24DC25_BB A 2 ? B 25 ? A 3 ? B 24 ? 1 A CBR 3 1_555 B DG 11 1_555 A DG 4 1_555 B DC 10 1_555 0.115 0.160 2.985 0.348 0.736 29.178 0.171 -0.159 2.989 1.460 -0.690 29.189 2 AA_CBR3DG4:DC23DG24_BB A 3 ? B 24 ? A 4 ? B 23 ? 1 A DG 4 1_555 B DC 10 1_555 A DA 5 1_555 B DT 9 1_555 -0.549 -0.025 3.492 -2.223 1.150 41.561 -0.166 0.521 3.514 1.619 3.129 41.633 3 AA_DG4DA5:DT22DC23_BB A 4 ? B 23 ? A 5 ? B 22 ? 1 A DA 5 1_555 B DT 9 1_555 A DA 6 1_555 B DT 8 1_555 0.518 -0.542 3.354 2.970 -9.337 36.746 0.422 -0.396 3.416 -14.496 -4.611 37.986 4 AA_DA5DA6:DT21DT22_BB A 5 ? B 22 ? A 6 ? B 21 ? 1 A DA 6 1_555 B DT 8 1_555 A DT 8 1_555 B DA 6 1_555 0.203 -0.677 6.750 4.176 14.564 68.060 -1.675 0.132 6.511 12.850 -3.684 69.528 5 AA_DA6DT8:DA19DT21_BB A 6 ? B 21 ? A 8 ? B 19 ? 1 A DT 8 1_555 B DA 6 1_555 A DT 9 1_555 B DA 5 1_555 -0.434 0.145 3.277 -2.250 2.318 39.865 -0.056 0.375 3.299 3.393 3.293 39.990 6 AA_DT8DT9:DA18DA19_BB A 8 ? B 19 ? A 9 ? B 18 ? 1 A DT 9 1_555 B DA 5 1_555 A DC 10 1_555 B DG 4 1_555 0.365 -0.151 3.262 2.753 0.705 37.311 -0.328 -0.207 3.276 1.100 -4.296 37.415 7 AA_DT9DC10:DG17DA18_BB A 9 ? B 18 ? A 10 ? B 17 ? 1 A DC 10 1_555 B DG 4 1_555 A DG 11 1_555 B CBR 3 1_555 0.531 0.202 3.180 -0.766 2.257 27.999 -0.100 -1.270 3.171 4.654 1.579 28.098 8 AA_DC10DG11:CBR16DG17_BB A 10 ? B 17 ? A 11 ? B 16 ? 1 A DG 11 1_555 B CBR 3 1_555 A DC 12 1_555 B DG 2 1_555 -0.699 0.089 3.282 1.771 0.082 26.993 0.169 1.942 3.230 0.176 -3.789 27.050 9 AA_DG11DC12:DG15CBR16_BB A 11 ? B 16 ? A 12 ? B 15 ? 1 A DC 12 1_555 B DG 2 1_555 C DG 2 1_555 D DC 12 1_555 0.097 1.716 3.745 0.972 -2.841 -67.768 -1.413 0.129 3.804 2.547 0.872 -67.827 10 AC_DC12DG2:DC25DG15_DB A 12 ? B 15 ? C 2 ? D 25 ? 1 C DG 2 1_555 D DC 12 1_555 C CBR 3 1_555 D DG 11 1_555 0.329 -0.351 3.412 -2.101 -5.549 26.854 0.693 -1.234 3.379 -11.766 4.456 27.490 11 CC_DG2CBR3:DG24DC25_DD C 2 ? D 25 ? C 3 ? D 24 ? 1 C CBR 3 1_555 D DG 11 1_555 C DG 4 1_555 D DC 10 1_555 -0.076 0.634 3.083 3.530 3.502 29.960 0.540 0.820 3.106 6.716 -6.770 30.361 12 CC_CBR3DG4:DC23DG24_DD C 3 ? D 24 ? C 4 ? D 23 ? 1 C DG 4 1_555 D DC 10 1_555 C DA 5 1_555 D DT 9 1_555 1.122 3.370 -1.460 177.777 -9.719 70.571 1.664 -0.959 -0.079 -4.882 -89.301 178.402 13 CC_DG4DA5:DT22DC23_DD C 4 ? D 23 ? C 5 ? D 22 ? 1 C DA 5 1_555 D DT 9 1_555 C DA 6 1_555 D DT 8 1_555 -1.567 -2.425 -1.337 127.569 -117.876 131.568 -1.384 0.599 -1.017 -59.126 -63.988 177.413 14 CC_DA5DA6:DT21DT22_DD C 5 ? D 22 ? C 6 ? D 21 ? 1 C DA 6 1_555 D DT 8 1_555 C DT 8 1_555 D DA 6 1_555 0.604 -1.475 6.803 0.654 7.823 123.267 -0.979 -0.331 6.746 4.443 -0.371 123.412 15 CC_DA6DT8:DA19DT21_DD C 6 ? D 21 ? C 8 ? D 19 ? 1 C DT 8 1_555 D DA 6 1_555 C DT 9 1_555 D DA 5 1_555 -0.789 0.978 3.526 2.865 -2.817 -17.537 -1.305 -0.670 3.715 9.085 9.240 -17.988 16 CC_DT8DT9:DA18DA19_DD C 8 ? D 19 ? C 9 ? D 18 ? 1 C DT 9 1_555 D DA 5 1_555 C DC 10 1_555 D DG 4 1_555 0.326 -0.107 3.266 -2.731 -0.444 41.354 -0.104 -0.751 3.240 -0.628 3.862 41.442 17 CC_DT9DC10:DG17DA18_DD C 9 ? D 18 ? C 10 ? D 17 ? 1 C DC 10 1_555 D DG 4 1_555 C DG 11 1_555 D CBR 3 1_555 -0.300 -0.025 3.058 2.793 2.800 27.102 -0.697 1.277 2.995 5.934 -5.920 27.384 18 CC_DC10DG11:CBR16DG17_DD C 10 ? D 17 ? C 11 ? D 16 ? 1 C DG 11 1_555 D CBR 3 1_555 C DC 12 1_555 D DG 2 1_555 -0.791 0.480 2.983 -1.678 -2.617 33.345 1.226 1.121 2.973 -4.549 2.917 33.486 19 CC_DG11DC12:DG15CBR16_DD C 11 ? D 16 ? C 12 ? D 15 ? 1 C DC 12 1_555 D DG 2 1_555 F DG 2 1_555 E DC 12 1_555 0.001 1.265 3.896 -2.705 -8.803 -71.395 -0.719 -0.110 4.006 7.512 -2.309 -71.908 20 CF_DC12DG15:DC12DG15_ED C 12 ? D 15 ? F 15 ? E 12 ? 1 F DG 2 1_555 E DC 12 1_555 F CBR 3 1_555 E DG 11 1_555 0.824 -0.076 3.383 0.834 0.397 29.211 -0.241 -1.445 3.404 0.787 -1.653 29.225 21 FF_DG15CBR16:DG11DC12_EE F 15 ? E 12 ? F 16 ? E 11 ? 1 F CBR 3 1_555 E DG 11 1_555 F DG 4 1_555 E DC 10 1_555 -0.067 0.363 3.127 1.880 0.615 28.035 0.608 0.559 3.123 1.267 -3.874 28.103 22 FF_CBR16DG17:DC10DG11_EE F 16 ? E 11 ? F 17 ? E 10 ? 1 F DG 4 1_555 E DC 10 1_555 F DA 5 1_555 E DT 9 1_555 -0.816 0.382 3.337 -3.885 2.545 40.097 0.257 0.729 3.415 3.697 5.643 40.354 23 FF_DG17DA18:DT9DC10_EE F 17 ? E 10 ? F 18 ? E 9 ? 1 F DA 5 1_555 E DT 9 1_555 F DA 6 1_555 E DT 8 1_555 0.098 -0.283 3.420 1.638 -5.152 32.413 0.430 0.122 3.424 -9.151 -2.909 32.848 24 FF_DA18DA19:DT8DT9_EE F 18 ? E 9 ? F 19 ? E 8 ? 1 F DA 6 1_555 E DT 8 1_555 F DT 8 1_555 E DA 6 1_555 0.392 -0.698 6.715 0.825 2.883 74.184 -0.763 -0.272 6.691 2.389 -0.683 74.235 25 FF_DA19DT21:DA6DT8_EE F 19 ? E 8 ? F 21 ? E 6 ? 1 F DT 8 1_555 E DA 6 1_555 F DT 9 1_555 E DA 5 1_555 0.381 -0.457 3.415 2.902 3.548 33.020 -1.412 -0.161 3.370 6.205 -5.075 33.328 26 FF_DT21DT22:DA5DA6_EE F 21 ? E 6 ? F 22 ? E 5 ? 1 F DT 9 1_555 E DA 5 1_555 F DC 10 1_555 E DG 4 1_555 -0.035 -0.352 3.302 2.803 5.187 49.126 -0.807 0.250 3.244 6.213 -3.358 49.457 27 FF_DT22DC23:DG4DA5_EE F 22 ? E 5 ? F 23 ? E 4 ? 1 F DC 10 1_555 E DG 4 1_555 F DG 11 1_555 E CBR 3 1_555 -0.219 0.167 3.024 1.708 0.011 26.453 0.362 0.894 3.004 0.024 -3.727 26.507 28 FF_DC23DG24:CBR3DG4_EE F 23 ? E 4 ? F 24 ? E 3 ? 1 F DG 11 1_555 E CBR 3 1_555 F DC 12 1_555 E DG 2 1_555 0.002 0.027 3.245 -5.983 1.256 32.449 -0.164 -1.011 3.193 2.223 10.590 33.005 29 FF_DG24DC25:DG2CBR3_EE F 24 ? E 3 ? F 25 ? E 2 ? 1 F DC 12 1_555 E DG 2 1_555 H DG 2 1_555 G DC 12 1_555 -0.497 1.381 3.714 2.452 -1.569 -78.005 -1.047 -0.316 3.749 1.246 1.947 -78.050 30 FH_DC25DG15:DC12DG2_GE F 25 ? E 2 ? H 15 ? G 12 ? 1 H DG 2 1_555 G DC 12 1_555 H CBR 3 1_555 G DG 11 1_555 1.016 -0.162 3.651 -4.310 -5.805 30.481 0.906 -2.778 3.450 -10.850 8.056 31.307 31 HH_DG15CBR16:DG11DC12_GG H 15 ? G 12 ? H 16 ? G 11 ? 1 H CBR 3 1_555 G DG 11 1_555 H DG 4 1_555 G DC 10 1_555 -0.070 0.171 2.969 6.819 2.323 27.611 -0.134 1.554 2.874 4.764 -13.988 28.517 32 HH_CBR16DG17:DC10DG11_GG H 16 ? G 11 ? H 17 ? G 10 ? 1 H DG 4 1_555 G DC 10 1_555 H DA 5 1_555 G DT 9 1_555 -0.629 0.638 3.220 -0.769 2.150 47.510 0.620 0.719 3.253 2.667 0.954 47.561 33 HH_DG17DA18:DT9DC10_GG H 17 ? G 10 ? H 18 ? G 9 ? 1 H DA 5 1_555 G DT 9 1_555 H DA 6 1_555 G DT 8 1_555 0.058 -0.332 3.214 -1.957 1.225 26.263 -1.048 -0.640 3.183 2.688 4.297 26.363 34 HH_DA18DA19:DT8DT9_GG H 18 ? G 9 ? H 19 ? G 8 ? 1 H DA 6 1_555 G DT 8 1_555 H DT 8 1_555 G DA 6 1_555 -0.180 -0.349 7.032 -3.107 9.915 81.892 -0.792 -0.029 6.965 7.537 2.362 82.433 35 HH_DA19DT21:DA6DT8_GG H 19 ? G 8 ? H 21 ? G 6 ? 1 H DT 8 1_555 G DA 6 1_555 H DT 9 1_555 G DA 5 1_555 -0.349 -0.314 3.366 -0.784 -2.650 30.961 -0.060 0.495 3.388 -4.952 1.466 31.081 36 HH_DT21DT22:DA5DA6_GG H 21 ? G 6 ? H 22 ? G 5 ? 1 H DT 9 1_555 G DA 5 1_555 H DC 10 1_555 G DG 4 1_555 0.463 -0.073 3.371 0.645 -2.131 39.615 0.149 -0.605 3.377 -3.141 -0.951 39.675 37 HH_DT22DC23:DG4DA5_GG H 22 ? G 5 ? H 23 ? G 4 ? 1 H DC 10 1_555 G DG 4 1_555 H DG 11 1_555 G CBR 3 1_555 -0.020 0.245 2.962 0.354 5.946 31.084 -0.553 0.096 2.956 10.969 -0.653 31.636 38 HH_DC23DG24:CBR3DG4_GG H 23 ? G 4 ? H 24 ? G 3 ? 1 H DG 11 1_555 G CBR 3 1_555 H DC 12 1_555 G DG 2 1_555 -1.073 0.422 3.060 1.610 -2.716 29.253 1.367 2.431 2.948 -5.358 -3.177 29.419 39 HH_DG24DC25:DG2CBR3_GG H 24 ? G 3 ? H 25 ? G 2 ? 1 I DG 2 1_555 J DC 12 1_555 I CBR 3 1_555 J DG 11 1_555 1.702 2.617 2.959 0.649 -4.761 -5.330 -0.428 16.391 3.780 41.673 5.685 -7.175 40 II_DG2CBR3:DG24DC25_JJ I 2 ? J 25 ? I 3 ? J 24 ? 1 I CBR 3 1_555 J DG 11 1_555 I DG 4 1_555 J DC 10 1_555 0.113 0.391 2.882 3.389 6.412 27.984 -0.494 0.448 2.892 12.986 -6.864 28.890 41 II_CBR3DG4:DC23DG24_JJ I 3 ? J 24 ? I 4 ? J 23 ? 1 I DG 4 1_555 J DC 10 1_555 I DA 5 1_555 J DT 9 1_555 -0.596 0.152 3.615 0.558 -1.466 40.630 0.398 0.926 3.600 -2.111 -0.803 40.659 42 II_DG4DA5:DT22DC23_JJ I 4 ? J 23 ? I 5 ? J 22 ? 1 I DA 5 1_555 J DT 9 1_555 I DA 6 1_555 J DT 8 1_555 1.101 -0.452 3.185 0.950 -4.136 32.285 -0.095 -1.801 3.246 -7.398 -1.699 32.555 43 II_DA5DA6:DT21DT22_JJ I 5 ? J 22 ? I 6 ? J 21 ? 1 I DA 6 1_555 J DT 8 1_555 I DT 8 1_555 J DA 6 1_555 1.760 -1.247 7.093 2.656 3.237 74.402 -1.248 -1.275 7.092 2.674 -2.195 74.502 44 II_DA6DT8:DA19DT21_JJ I 6 ? J 21 ? I 8 ? J 19 ? 1 I DT 8 1_555 J DA 6 1_555 I DT 9 1_555 J DA 5 1_555 -0.919 -0.078 3.376 -2.223 8.910 30.336 -1.854 1.258 3.279 16.556 4.130 31.664 45 II_DT8DT9:DA18DA19_JJ I 8 ? J 19 ? I 9 ? J 18 ? 1 I DT 9 1_555 J DA 5 1_555 I DC 10 1_555 J DG 4 1_555 -0.259 -0.206 2.404 11.893 -5.380 44.369 0.074 1.074 2.275 -6.947 -15.358 46.156 46 II_DT9DC10:DG17DA18_JJ I 9 ? J 18 ? I 10 ? J 17 ? 1 I DC 10 1_555 J DG 4 1_555 I DG 11 1_555 J CBR 3 1_555 -0.927 0.748 4.099 9.447 20.345 30.738 -2.229 2.998 3.513 33.379 -15.499 37.892 47 II_DC10DG11:CBR16DG17_JJ I 10 ? J 17 ? I 11 ? J 16 ? 1 I DG 11 1_555 J CBR 3 1_555 I DC 12 1_555 J DG 2 1_555 0.004 0.952 2.385 -15.845 -10.825 36.170 2.196 -1.220 1.879 -16.117 23.591 40.794 48 II_DG11DC12:DG15CBR16_JJ I 11 ? J 16 ? I 12 ? J 15 ? 1 K CBR 3 1_555 L DG 11 1_555 K DG 4 1_555 L DC 10 1_555 -0.050 0.084 2.926 10.331 -7.855 27.035 1.612 2.001 2.609 -15.705 -20.655 29.937 49 KK_CBR3DG4:DC23DG24_LL K 3 ? L 24 ? K 4 ? L 23 ? 1 K DG 4 1_555 L DC 10 1_555 K DA 5 1_555 L DT 9 1_555 -0.462 1.201 3.228 -0.218 0.351 45.489 1.522 0.578 3.239 0.454 0.282 45.491 50 KK_DG4DA5:DT22DC23_LL K 4 ? L 23 ? K 5 ? L 22 ? 1 K DA 5 1_555 L DT 9 1_555 K DA 6 1_555 L DT 8 1_555 0.425 0.571 2.546 2.964 11.751 22.667 -1.470 -0.262 2.559 27.515 -6.939 25.666 51 KK_DA5DA6:DT21DT22_LL K 5 ? L 22 ? K 6 ? L 21 ? 1 K DA 6 1_555 L DT 8 1_555 K DT 8 1_555 L DA 6 1_555 1.185 -1.402 7.138 -6.689 8.089 71.256 -1.777 -1.491 6.848 6.906 5.711 71.923 52 KK_DA6DT8:DA19DT21_LL K 6 ? L 21 ? K 8 ? L 19 ? 1 K DT 8 1_555 L DA 6 1_555 K DT 9 1_555 L DA 5 1_555 -0.337 -0.854 3.647 4.803 9.684 41.592 -2.209 0.977 3.319 13.368 -6.630 42.913 53 KK_DT8DT9:DA18DA19_LL K 8 ? L 19 ? K 9 ? L 18 ? 1 K DT 9 1_555 L DA 5 1_555 K DC 10 1_555 L DG 4 1_555 -0.308 -0.134 2.638 -8.001 -0.382 40.384 -0.156 -0.270 2.650 -0.547 11.454 41.139 54 KK_DT9DC10:DG17DA18_LL K 9 ? L 18 ? K 10 ? L 17 ? 1 K DC 10 1_555 L DG 4 1_555 K DG 11 1_555 L CBR 3 1_555 -1.278 -2.484 0.315 -166.071 36.234 -133.911 1.236 -0.671 0.009 -18.202 -83.425 -176.081 55 KK_DC10DG11:CBR16DG17_LL K 10 ? L 17 ? K 11 ? L 16 ? # _atom_sites.entry_id 2PIS _atom_sites.fract_transf_matrix[1][1] 0.006848 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006848 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010737 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C F MG N O P # loop_