HEADER ISOMERASE 16-APR-07 2PJM OBSLTE 06-OCT-09 2PJM 3IXQ TITLE STRUCTURE OF RIBOSE 5-PHOSPHATE ISOMERASE A FROM TITLE 2 METHANOCALDOCOCCUS JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-5-PHOSPHATE ISOMERASE A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PHOSPHORIBOISOMERASE A, PRI; COMPND 5 EC: 5.3.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 STRAIN: DSM2661, JAL-1, JCM 10045, NBRC 100440; SOURCE 5 ATCC: 43067; SOURCE 6 GENE: RPIA, MJ1603; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS 3D-STRUCTURE, STRUCTURAL GENOMICS, ISOMERASE, PENTOSE KEYWDS 2 PHOSPHATE PATHWAY, CARBON FIXATION, NPPSFA, NATIONAL KEYWDS 3 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR S.V.ANTONYUK,M.J.ELLIS,R.W.STRANGE,S.S.HASNAIN,Y.BESSHO, AUTHOR 2 S.KURAMITSU,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI) REVDAT 3 06-OCT-09 2PJM 1 OBSLTE REVDAT 2 24-FEB-09 2PJM 1 VERSN REVDAT 1 16-OCT-07 2PJM 0 JRNL AUTH S.V.ANTONYUK,M.J.ELLIS,R.W.STRANGE,S.S.HASNAIN, JRNL AUTH 2 Y.BESSHO,S.KURAMITSU,S.YOKOYAMA JRNL TITL STRUCTURE OF RIBOSE 5-PHOSPHATE ISOMERASE A FROM JRNL TITL 2 METHANOCALDOCOCCUS JANNASCHII. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 81022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4045 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5553 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 302 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7072 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 957 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.65000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.211 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7206 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4949 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9741 ; 1.410 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12261 ; 0.919 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 947 ; 6.061 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 294 ;42.278 ;25.782 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1413 ;12.966 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;14.359 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1169 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7884 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1292 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1417 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5460 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3553 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3810 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 760 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.395 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 78 ; 0.287 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.219 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 6001 ; 1.254 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1878 ; 0.232 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7365 ; 1.362 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3017 ; 2.474 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2350 ; 3.449 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2PJM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-07. REMARK 100 THE RCSB ID CODE IS RCSB042449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07400 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94575 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : 0.38000 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1LK5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS IN 20MM TRIS-HCL PH REMARK 280 8.0, 200MM NACL. PRECIPITANT WAS 40% V/V 1,2-PROPANEDIOL, 0.1 REMARK 280 M ACETATE PH 4.5, 0.05 M CA ACETATE, OIL (TERA), MICROBATCH REMARK 280 UNDER OIL, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.13650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 401 O HOH B 576 2.06 REMARK 500 O LEU D 70 O HOH D 261 2.14 REMARK 500 O HOH C 345 O HOH C 494 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE LYS C 219 O HOH A 271 2546 1.88 REMARK 500 C LYS D 226 O HOH C 447 2555 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 93 18.21 59.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 231 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 231 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 231 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 231 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 234 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 236 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO B 335 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO C 235 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO D 234 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO D 235 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MJA001001603.1 RELATED DB: TARGETDB DBREF 2PJM A 1 226 UNP Q58998 RPIA_METJA 1 226 DBREF 2PJM B 1 226 UNP Q58998 RPIA_METJA 1 226 DBREF 2PJM C 1 226 UNP Q58998 RPIA_METJA 1 226 DBREF 2PJM D 1 226 UNP Q58998 RPIA_METJA 1 226 SEQRES 1 A 226 MET SER ASN GLU ASP LEU LYS LEU LYS VAL ALA LYS GLU SEQRES 2 A 226 ALA VAL LYS LEU VAL LYS ASP GLY MET VAL ILE GLY LEU SEQRES 3 A 226 GLY THR GLY SER THR ALA ALA LEU PHE ILE ARG GLU LEU SEQRES 4 A 226 GLY ASN ARG ILE ARG GLU GLU GLU LEU THR VAL PHE GLY SEQRES 5 A 226 ILE PRO THR SER PHE GLU ALA LYS MET LEU ALA MET GLN SEQRES 6 A 226 TYR GLU ILE PRO LEU VAL THR LEU ASP GLU TYR ASP VAL SEQRES 7 A 226 ASP ILE ALA PHE ASP GLY ALA ASP GLU VAL GLU GLU THR SEQRES 8 A 226 THR LEU PHE LEU ILE LYS GLY GLY GLY GLY CYS HIS THR SEQRES 9 A 226 GLN GLU LYS ILE VAL ASP TYR ASN ALA ASN GLU PHE VAL SEQRES 10 A 226 VAL LEU VAL ASP GLU SER LYS LEU VAL LYS LYS LEU GLY SEQRES 11 A 226 GLU LYS PHE PRO ILE PRO VAL GLU VAL ILE PRO SER ALA SEQRES 12 A 226 TYR ARG VAL VAL ILE ARG ALA LEU SER GLU MET GLY GLY SEQRES 13 A 226 GLU ALA VAL ILE ARG LEU GLY ASP ARG LYS ARG GLY PRO SEQRES 14 A 226 VAL ILE THR ASP ASN GLY ASN MET ILE ILE ASP VAL PHE SEQRES 15 A 226 MET ASN ILE ASP ASP ALA ILE GLU LEU GLU LYS GLU ILE SEQRES 16 A 226 ASN ASN ILE PRO GLY VAL VAL GLU ASN GLY ILE PHE THR SEQRES 17 A 226 LYS VAL ASP LYS VAL LEU VAL GLY THR LYS LYS GLY VAL SEQRES 18 A 226 LYS THR LEU LYS LYS SEQRES 1 B 226 MET SER ASN GLU ASP LEU LYS LEU LYS VAL ALA LYS GLU SEQRES 2 B 226 ALA VAL LYS LEU VAL LYS ASP GLY MET VAL ILE GLY LEU SEQRES 3 B 226 GLY THR GLY SER THR ALA ALA LEU PHE ILE ARG GLU LEU SEQRES 4 B 226 GLY ASN ARG ILE ARG GLU GLU GLU LEU THR VAL PHE GLY SEQRES 5 B 226 ILE PRO THR SER PHE GLU ALA LYS MET LEU ALA MET GLN SEQRES 6 B 226 TYR GLU ILE PRO LEU VAL THR LEU ASP GLU TYR ASP VAL SEQRES 7 B 226 ASP ILE ALA PHE ASP GLY ALA ASP GLU VAL GLU GLU THR SEQRES 8 B 226 THR LEU PHE LEU ILE LYS GLY GLY GLY GLY CYS HIS THR SEQRES 9 B 226 GLN GLU LYS ILE VAL ASP TYR ASN ALA ASN GLU PHE VAL SEQRES 10 B 226 VAL LEU VAL ASP GLU SER LYS LEU VAL LYS LYS LEU GLY SEQRES 11 B 226 GLU LYS PHE PRO ILE PRO VAL GLU VAL ILE PRO SER ALA SEQRES 12 B 226 TYR ARG VAL VAL ILE ARG ALA LEU SER GLU MET GLY GLY SEQRES 13 B 226 GLU ALA VAL ILE ARG LEU GLY ASP ARG LYS ARG GLY PRO SEQRES 14 B 226 VAL ILE THR ASP ASN GLY ASN MET ILE ILE ASP VAL PHE SEQRES 15 B 226 MET ASN ILE ASP ASP ALA ILE GLU LEU GLU LYS GLU ILE SEQRES 16 B 226 ASN ASN ILE PRO GLY VAL VAL GLU ASN GLY ILE PHE THR SEQRES 17 B 226 LYS VAL ASP LYS VAL LEU VAL GLY THR LYS LYS GLY VAL SEQRES 18 B 226 LYS THR LEU LYS LYS SEQRES 1 C 226 MET SER ASN GLU ASP LEU LYS LEU LYS VAL ALA LYS GLU SEQRES 2 C 226 ALA VAL LYS LEU VAL LYS ASP GLY MET VAL ILE GLY LEU SEQRES 3 C 226 GLY THR GLY SER THR ALA ALA LEU PHE ILE ARG GLU LEU SEQRES 4 C 226 GLY ASN ARG ILE ARG GLU GLU GLU LEU THR VAL PHE GLY SEQRES 5 C 226 ILE PRO THR SER PHE GLU ALA LYS MET LEU ALA MET GLN SEQRES 6 C 226 TYR GLU ILE PRO LEU VAL THR LEU ASP GLU TYR ASP VAL SEQRES 7 C 226 ASP ILE ALA PHE ASP GLY ALA ASP GLU VAL GLU GLU THR SEQRES 8 C 226 THR LEU PHE LEU ILE LYS GLY GLY GLY GLY CYS HIS THR SEQRES 9 C 226 GLN GLU LYS ILE VAL ASP TYR ASN ALA ASN GLU PHE VAL SEQRES 10 C 226 VAL LEU VAL ASP GLU SER LYS LEU VAL LYS LYS LEU GLY SEQRES 11 C 226 GLU LYS PHE PRO ILE PRO VAL GLU VAL ILE PRO SER ALA SEQRES 12 C 226 TYR ARG VAL VAL ILE ARG ALA LEU SER GLU MET GLY GLY SEQRES 13 C 226 GLU ALA VAL ILE ARG LEU GLY ASP ARG LYS ARG GLY PRO SEQRES 14 C 226 VAL ILE THR ASP ASN GLY ASN MET ILE ILE ASP VAL PHE SEQRES 15 C 226 MET ASN ILE ASP ASP ALA ILE GLU LEU GLU LYS GLU ILE SEQRES 16 C 226 ASN ASN ILE PRO GLY VAL VAL GLU ASN GLY ILE PHE THR SEQRES 17 C 226 LYS VAL ASP LYS VAL LEU VAL GLY THR LYS LYS GLY VAL SEQRES 18 C 226 LYS THR LEU LYS LYS SEQRES 1 D 226 MET SER ASN GLU ASP LEU LYS LEU LYS VAL ALA LYS GLU SEQRES 2 D 226 ALA VAL LYS LEU VAL LYS ASP GLY MET VAL ILE GLY LEU SEQRES 3 D 226 GLY THR GLY SER THR ALA ALA LEU PHE ILE ARG GLU LEU SEQRES 4 D 226 GLY ASN ARG ILE ARG GLU GLU GLU LEU THR VAL PHE GLY SEQRES 5 D 226 ILE PRO THR SER PHE GLU ALA LYS MET LEU ALA MET GLN SEQRES 6 D 226 TYR GLU ILE PRO LEU VAL THR LEU ASP GLU TYR ASP VAL SEQRES 7 D 226 ASP ILE ALA PHE ASP GLY ALA ASP GLU VAL GLU GLU THR SEQRES 8 D 226 THR LEU PHE LEU ILE LYS GLY GLY GLY GLY CYS HIS THR SEQRES 9 D 226 GLN GLU LYS ILE VAL ASP TYR ASN ALA ASN GLU PHE VAL SEQRES 10 D 226 VAL LEU VAL ASP GLU SER LYS LEU VAL LYS LYS LEU GLY SEQRES 11 D 226 GLU LYS PHE PRO ILE PRO VAL GLU VAL ILE PRO SER ALA SEQRES 12 D 226 TYR ARG VAL VAL ILE ARG ALA LEU SER GLU MET GLY GLY SEQRES 13 D 226 GLU ALA VAL ILE ARG LEU GLY ASP ARG LYS ARG GLY PRO SEQRES 14 D 226 VAL ILE THR ASP ASN GLY ASN MET ILE ILE ASP VAL PHE SEQRES 15 D 226 MET ASN ILE ASP ASP ALA ILE GLU LEU GLU LYS GLU ILE SEQRES 16 D 226 ASN ASN ILE PRO GLY VAL VAL GLU ASN GLY ILE PHE THR SEQRES 17 D 226 LYS VAL ASP LYS VAL LEU VAL GLY THR LYS LYS GLY VAL SEQRES 18 D 226 LYS THR LEU LYS LYS HET CL A 231 1 HET CL B 231 1 HET CL C 231 1 HET CL D 231 1 HET PGO A 234 5 HET PGO A 236 5 HET PGO B 335 5 HET PGO C 235 5 HET PGO D 234 5 HET PGO D 235 5 HETNAM CL CHLORIDE ION HETNAM PGO S-1,2-PROPANEDIOL FORMUL 5 CL 4(CL 1-) FORMUL 9 PGO 6(C3 H8 O2) FORMUL 15 HOH *957(H2 O) HELIX 1 1 ASN A 3 VAL A 15 1 13 HELIX 2 2 LYS A 16 VAL A 18 5 3 HELIX 3 3 GLY A 29 GLU A 47 1 19 HELIX 4 4 SER A 56 TYR A 66 1 11 HELIX 5 5 CYS A 102 ALA A 113 1 12 HELIX 6 6 ALA A 143 MET A 154 1 12 HELIX 7 7 ASP A 187 ASN A 197 1 11 HELIX 8 8 ASN B 3 LYS B 16 1 14 HELIX 9 9 GLY B 29 GLU B 46 1 18 HELIX 10 10 SER B 56 TYR B 66 1 11 HELIX 11 11 CYS B 102 TYR B 111 1 10 HELIX 12 12 ALA B 143 MET B 154 1 12 HELIX 13 13 ASP B 187 ASN B 197 1 11 HELIX 14 14 ASN C 3 VAL C 15 1 13 HELIX 15 15 LYS C 16 VAL C 18 5 3 HELIX 16 16 GLY C 29 GLU C 47 1 19 HELIX 17 17 SER C 56 TYR C 66 1 11 HELIX 18 18 CYS C 102 ALA C 113 1 12 HELIX 19 19 ALA C 143 MET C 154 1 12 HELIX 20 20 ASP C 187 ASN C 197 1 11 HELIX 21 21 ASN D 3 LYS D 16 1 14 HELIX 22 22 GLY D 29 GLU D 46 1 18 HELIX 23 23 SER D 56 TYR D 66 1 11 HELIX 24 24 CYS D 102 TYR D 111 1 10 HELIX 25 25 ALA D 143 MET D 154 1 12 HELIX 26 26 ASP D 187 ASN D 197 1 11 SHEET 1 A 6 PHE A 51 PRO A 54 0 SHEET 2 A 6 VAL A 23 LEU A 26 1 N LEU A 26 O ILE A 53 SHEET 3 A 6 ILE A 80 ASP A 83 1 O PHE A 82 N GLY A 25 SHEET 4 A 6 GLU A 115 ASP A 121 1 O VAL A 117 N ALA A 81 SHEET 5 A 6 LYS A 212 THR A 217 1 O LEU A 214 N VAL A 118 SHEET 6 A 6 GLY A 220 LEU A 224 -1 O LEU A 224 N VAL A 213 SHEET 1 B 4 LEU A 125 VAL A 126 0 SHEET 2 B 4 GLU A 87 GLU A 89 1 N VAL A 88 O VAL A 126 SHEET 3 B 4 LEU A 95 ILE A 96 -1 O ILE A 96 N GLU A 87 SHEET 4 B 4 ILE A 206 PHE A 207 -1 O PHE A 207 N LEU A 95 SHEET 1 C 4 GLU A 157 ILE A 160 0 SHEET 2 C 4 MET A 177 PHE A 182 -1 O ASP A 180 N VAL A 159 SHEET 3 C 4 ILE A 135 VAL A 139 -1 N ILE A 135 O VAL A 181 SHEET 4 C 4 VAL A 201 ASN A 204 -1 O GLU A 203 N GLU A 138 SHEET 1 D 6 PHE B 51 PRO B 54 0 SHEET 2 D 6 VAL B 23 LEU B 26 1 N ILE B 24 O PHE B 51 SHEET 3 D 6 ILE B 80 ASP B 83 1 O PHE B 82 N GLY B 25 SHEET 4 D 6 GLU B 115 ASP B 121 1 O VAL B 117 N ALA B 81 SHEET 5 D 6 LYS B 212 GLY B 216 1 O LEU B 214 N VAL B 118 SHEET 6 D 6 VAL B 221 LEU B 224 -1 O LEU B 224 N VAL B 213 SHEET 1 E 4 LEU B 125 VAL B 126 0 SHEET 2 E 4 GLU B 87 GLU B 89 1 N VAL B 88 O VAL B 126 SHEET 3 E 4 LEU B 95 ILE B 96 -1 O ILE B 96 N GLU B 87 SHEET 4 E 4 ILE B 206 PHE B 207 -1 O PHE B 207 N LEU B 95 SHEET 1 F 4 GLU B 157 ILE B 160 0 SHEET 2 F 4 MET B 177 PHE B 182 -1 O ASP B 180 N VAL B 159 SHEET 3 F 4 ILE B 135 VAL B 139 -1 N ILE B 135 O VAL B 181 SHEET 4 F 4 VAL B 201 ASN B 204 -1 O VAL B 202 N GLU B 138 SHEET 1 G 6 PHE C 51 PRO C 54 0 SHEET 2 G 6 VAL C 23 LEU C 26 1 N LEU C 26 O ILE C 53 SHEET 3 G 6 ILE C 80 ASP C 83 1 O ILE C 80 N GLY C 25 SHEET 4 G 6 GLU C 115 ASP C 121 1 O VAL C 117 N ALA C 81 SHEET 5 G 6 LYS C 212 THR C 217 1 O LEU C 214 N VAL C 118 SHEET 6 G 6 GLY C 220 LEU C 224 -1 O LEU C 224 N VAL C 213 SHEET 1 H 4 LEU C 125 VAL C 126 0 SHEET 2 H 4 GLU C 87 GLU C 89 1 N VAL C 88 O VAL C 126 SHEET 3 H 4 LEU C 95 ILE C 96 -1 O ILE C 96 N GLU C 87 SHEET 4 H 4 ILE C 206 PHE C 207 -1 O PHE C 207 N LEU C 95 SHEET 1 I 4 GLU C 157 ILE C 160 0 SHEET 2 I 4 MET C 177 PHE C 182 -1 O ASP C 180 N VAL C 159 SHEET 3 I 4 ILE C 135 VAL C 139 -1 N ILE C 135 O VAL C 181 SHEET 4 I 4 VAL C 201 ASN C 204 -1 O GLU C 203 N GLU C 138 SHEET 1 J 6 PHE D 51 PRO D 54 0 SHEET 2 J 6 VAL D 23 LEU D 26 1 N LEU D 26 O ILE D 53 SHEET 3 J 6 ILE D 80 ASP D 83 1 O PHE D 82 N GLY D 25 SHEET 4 J 6 GLU D 115 ASP D 121 1 O LEU D 119 N ASP D 83 SHEET 5 J 6 LYS D 212 GLY D 216 1 O LEU D 214 N VAL D 118 SHEET 6 J 6 VAL D 221 LEU D 224 -1 O LYS D 222 N VAL D 215 SHEET 1 K 4 LEU D 125 VAL D 126 0 SHEET 2 K 4 GLU D 87 GLU D 89 1 N VAL D 88 O VAL D 126 SHEET 3 K 4 LEU D 95 ILE D 96 -1 O ILE D 96 N GLU D 87 SHEET 4 K 4 ILE D 206 PHE D 207 -1 O PHE D 207 N LEU D 95 SHEET 1 L 4 GLU D 157 ILE D 160 0 SHEET 2 L 4 MET D 177 PHE D 182 -1 O ASP D 180 N VAL D 159 SHEET 3 L 4 ILE D 135 VAL D 139 -1 N ILE D 135 O VAL D 181 SHEET 4 L 4 VAL D 201 ASN D 204 -1 O VAL D 202 N GLU D 138 SITE 1 AC1 5 GLY A 98 GLY A 100 GLY A 101 CYS A 102 SITE 2 AC1 5 GLU A 106 SITE 1 AC2 6 GLY B 98 GLY B 100 GLY B 101 CYS B 102 SITE 2 AC2 6 GLU B 106 PGO B 335 SITE 1 AC3 6 GLY C 98 GLY C 100 GLY C 101 CYS C 102 SITE 2 AC3 6 GLU C 106 PGO C 235 SITE 1 AC4 6 GLY D 98 GLY D 100 GLY D 101 CYS D 102 SITE 2 AC4 6 GLU D 106 PGO D 235 SITE 1 AC5 3 ARG A 37 TYR A 66 HOH A 249 SITE 1 AC6 7 GLY A 29 SER A 30 THR A 31 ALA A 85 SITE 2 AC6 7 LYS A 124 HOH A 243 HOH A 492 SITE 1 AC7 10 ASP B 86 LYS B 97 GLY B 98 GLY B 99 SITE 2 AC7 10 GLY B 100 GLU B 106 CL B 231 HOH B 491 SITE 3 AC7 10 HOH B 577 HOH B 578 SITE 1 AC8 12 THR C 28 ASP C 83 GLY C 84 ALA C 85 SITE 2 AC8 12 ASP C 86 LYS C 97 GLY C 98 GLY C 99 SITE 3 AC8 12 GLY C 100 GLU C 106 CL C 231 HOH C 282 SITE 1 AC9 5 GLU C 58 GLY D 163 LYS D 166 ARG D 167 SITE 2 AC9 5 GLY D 168 SITE 1 BC1 9 THR D 28 ASP D 83 GLY D 84 ALA D 85 SITE 2 BC1 9 ASP D 86 LYS D 97 GLY D 98 GLU D 106 SITE 3 BC1 9 CL D 231 CRYST1 54.856 100.273 80.465 90.00 92.54 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018230 0.000000 0.000810 0.00000 SCALE2 0.000000 0.009973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012440 0.00000