data_2PJP # _entry.id 2PJP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PJP pdb_00002pjp 10.2210/pdb2pjp/pdb NDB PR0285 ? ? RCSB RCSB042452 ? ? WWPDB D_1000042452 ? ? # _pdbx_database_status.entry_id 2PJP _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-04-16 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Soler, N.' 1 'Fourmy, D.' 2 'Yoshizawa, S.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structural insight into a molecular switch in tandem winged-helix motifs from elongation factor SelB.' J.Mol.Biol. 370 728 741 2007 JMOBAK UK 0022-2836 0070 ? 17537456 10.1016/j.jmb.2007.05.001 1 ;Crystallization and preliminary X-ray analysis of the mRNA-binding domain of elongation factor SelB from Escherichia coli in complex with RNA. ; 'Acta Crystallogr.,Sect.F' 63 419 421 2007 ? DK 1744-3091 ? ? 17565186 10.1107/S174430910701723X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Soler, N.' 1 ? primary 'Fourmy, D.' 2 ? primary 'Yoshizawa, S.' 3 ? 1 'Soler, N.' 4 ? 1 'Fourmy, D.' 5 ? 1 'Yoshizawa, S.' 6 ? # _cell.length_a 103.498 _cell.length_b 56.515 _cell.length_c 48.414 _cell.angle_alpha 90.000 _cell.angle_beta 95.600 _cell.angle_gamma 90.000 _cell.entry_id 2PJP _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 2PJP _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'SECIS RNA' 7386.423 1 ? ? ? ? 2 polymer man 'Selenocysteine-specific elongation factor' 14229.002 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 17 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 5 non-polymer syn 'CALCIUM ION' 40.078 4 ? ? ? ? 6 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 7 water nat water 18.015 112 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'SelB translation factor' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGCGGUUGCAGGUCUGCACCGCC GGCGGUUGCAGGUCUGCACCGCC B ? 2 'polypeptide(L)' no no ;FSEEQQAIWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGS TCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHLLRD ; ;FSEEQQAIWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGS TCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHLLRD ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 G n 1 6 U n 1 7 U n 1 8 G n 1 9 C n 1 10 A n 1 11 G n 1 12 G n 1 13 U n 1 14 C n 1 15 U n 1 16 G n 1 17 C n 1 18 A n 1 19 C n 1 20 C n 1 21 G n 1 22 C n 1 23 C n 2 1 PHE n 2 2 SER n 2 3 GLU n 2 4 GLU n 2 5 GLN n 2 6 GLN n 2 7 ALA n 2 8 ILE n 2 9 TRP n 2 10 GLN n 2 11 LYS n 2 12 ALA n 2 13 GLU n 2 14 PRO n 2 15 LEU n 2 16 PHE n 2 17 GLY n 2 18 ASP n 2 19 GLU n 2 20 PRO n 2 21 TRP n 2 22 TRP n 2 23 VAL n 2 24 ARG n 2 25 ASP n 2 26 LEU n 2 27 ALA n 2 28 LYS n 2 29 GLU n 2 30 THR n 2 31 GLY n 2 32 THR n 2 33 ASP n 2 34 GLU n 2 35 GLN n 2 36 ALA n 2 37 MET n 2 38 ARG n 2 39 LEU n 2 40 THR n 2 41 LEU n 2 42 ARG n 2 43 GLN n 2 44 ALA n 2 45 ALA n 2 46 GLN n 2 47 GLN n 2 48 GLY n 2 49 ILE n 2 50 ILE n 2 51 THR n 2 52 ALA n 2 53 ILE n 2 54 VAL n 2 55 LYS n 2 56 ASP n 2 57 ARG n 2 58 TYR n 2 59 TYR n 2 60 ARG n 2 61 ASN n 2 62 ASP n 2 63 ARG n 2 64 ILE n 2 65 VAL n 2 66 GLU n 2 67 PHE n 2 68 ALA n 2 69 ASN n 2 70 MET n 2 71 ILE n 2 72 ARG n 2 73 ASP n 2 74 LEU n 2 75 ASP n 2 76 GLN n 2 77 GLU n 2 78 CYS n 2 79 GLY n 2 80 SER n 2 81 THR n 2 82 CYS n 2 83 ALA n 2 84 ALA n 2 85 ASP n 2 86 PHE n 2 87 ARG n 2 88 ASP n 2 89 ARG n 2 90 LEU n 2 91 GLY n 2 92 VAL n 2 93 GLY n 2 94 ARG n 2 95 LYS n 2 96 LEU n 2 97 ALA n 2 98 ILE n 2 99 GLN n 2 100 ILE n 2 101 LEU n 2 102 GLU n 2 103 TYR n 2 104 PHE n 2 105 ASP n 2 106 ARG n 2 107 ILE n 2 108 GLY n 2 109 PHE n 2 110 THR n 2 111 ARG n 2 112 ARG n 2 113 ARG n 2 114 GLY n 2 115 ASN n 2 116 ASP n 2 117 HIS n 2 118 LEU n 2 119 LEU n 2 120 ARG n 2 121 ASP n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene 'selB, fdhA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-2T _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'in vitro transcription with T7 RNA polymerase' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 PDB 2PJP 2PJP 1 GGCGGUUGCAGGUCUGCACCGCC 1 ? 2 UNP SELB_ECOLI P14081 2 ;FSEEQQAIWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGS TCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHLLRD ; 487 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2PJP B 1 ? 23 ? 2PJP 12 ? 34 ? 12 34 2 2 2PJP A 1 ? 121 ? P14081 487 ? 607 ? 487 607 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2PJP _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.26 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 62.26 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;6.7 mM calcium chloride, 33 mM sodium acetate ,10% 2-methyl-2,4-pentanediol, 0.17M sodium fluoride (final), pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'calcium chloride' ? ? ? 1 2 1 'sodium acetate' ? ? ? 1 3 1 2-methyl-2,4-pentanediol ? ? ? 1 4 1 'sodium fluoride' ? ? ? 1 5 2 'calcium chloride' ? ? ? 1 6 2 'sodium acetate' ? ? ? 1 7 2 2-methyl-2,4-pentanediol ? ? ? 1 8 2 'sodium fluoride' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2005-11-19 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si crystals' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9797 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9797 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM30A # _reflns.entry_id 2PJP _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 51.503 _reflns.number_obs 18032 _reflns.pdbx_Rmerge_I_obs 0.101 _reflns.pdbx_netI_over_sigmaI 5.000 _reflns.pdbx_Rsym_value 0.101 _reflns.pdbx_redundancy 3.500 _reflns.percent_possible_obs 95.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all 17473 _reflns.B_iso_Wilson_estimate 38.2 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.00 2.11 ? 6524 ? 0.940 0.6 0.940 ? 2.60 ? 2545 92.80 ? 1 2.11 2.24 ? 9041 ? 0.827 0.8 0.827 ? 3.70 ? 2460 95.80 ? 2 2.24 2.39 ? 8459 ? 0.533 0.6 0.533 ? 3.60 ? 2353 96.00 ? 3 2.39 2.58 ? 8038 ? 0.311 2.3 0.311 ? 3.70 ? 2186 96.20 ? 4 2.58 2.83 ? 7374 ? 0.183 3.8 0.183 ? 3.60 ? 2022 96.30 ? 5 2.83 3.16 ? 6624 ? 0.104 6.7 0.104 ? 3.60 ? 1816 96.50 ? 6 3.16 3.65 ? 5917 ? 0.068 9.7 0.068 ? 3.60 ? 1630 96.90 ? 7 3.65 4.47 ? 4922 ? 0.048 11.8 0.048 ? 3.60 ? 1374 96.80 ? 8 4.47 6.32 ? 3823 ? 0.042 13.4 0.042 ? 3.60 ? 1069 97.00 ? 9 6.32 18.33 ? 1931 ? 0.047 12.6 0.047 ? 3.30 ? 577 92.40 ? 10 # _refine.entry_id 2PJP _refine.ls_d_res_high 2.300 _refine.ls_d_res_low 51.500 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 95.590 _refine.ls_number_reflns_obs 11957 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_obs 0.204 _refine.ls_R_factor_R_work 0.200 _refine.ls_R_factor_R_free 0.251 _refine.ls_percent_reflns_R_free 7.100 _refine.ls_number_reflns_R_free 850 _refine.B_iso_mean 31.599 _refine.aniso_B[1][1] -1.730 _refine.aniso_B[2][2] 0.470 _refine.aniso_B[3][3] 1.260 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.010 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.916 _refine.pdbx_overall_ESU_R_Free 0.229 _refine.overall_SU_ML 0.153 _refine.overall_SU_B 6.086 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ENTRY 1WSU' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model isotropic _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.281 _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 982 _refine_hist.pdbx_number_atoms_nucleic_acid 491 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 1609 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 51.500 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1546 0.021 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2197 2.463 2.347 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 120 7.225 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 57 36.278 22.807 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 174 21.834 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14 24.846 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 257 0.161 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1018 0.010 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 610 0.237 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 951 0.304 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 107 0.238 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 3 0.468 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 30 0.292 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 3 0.127 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 1 0.460 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 598 1.057 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 951 1.968 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1069 3.047 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1246 4.134 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 95.510 _refine_ls_shell.number_reflns_R_work 832 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.267 _refine_ls_shell.R_factor_R_free 0.306 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 62 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 894 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2PJP _struct.title 'Structure of the mRNA-binding domain of elongation factor SelB from E.coli in complex with SECIS RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PJP _struct_keywords.pdbx_keywords translation/RNA _struct_keywords.text 'selb, protein-rna complex, elongation factor, secis, winged-helix, bulge, translation-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 4 ? R N N 3 ? S N N 4 ? T N N 5 ? U N N 3 ? V N N 5 ? W N N 6 ? X N N 3 ? Y N N 5 ? Z N N 5 ? AA N N 7 ? BA N N 7 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER B 2 ? GLU B 13 ? SER A 488 GLU A 499 1 ? 12 HELX_P HELX_P2 2 PRO B 14 ? PHE B 16 ? PRO A 500 PHE A 502 5 ? 3 HELX_P HELX_P3 3 VAL B 23 ? THR B 30 ? VAL A 509 THR A 516 1 ? 8 HELX_P HELX_P4 4 ASP B 33 ? GLN B 47 ? ASP A 519 GLN A 533 1 ? 15 HELX_P HELX_P5 5 ASN B 61 ? GLY B 79 ? ASN A 547 GLY A 565 1 ? 19 HELX_P HELX_P6 6 ALA B 83 ? GLY B 91 ? ALA A 569 GLY A 577 1 ? 9 HELX_P HELX_P7 7 GLY B 93 ? ILE B 107 ? GLY A 579 ILE A 593 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 1 N7 ? ? ? 1_555 N MG . MG ? ? B G 12 B MG 50 1_555 ? ? ? ? ? ? ? 2.131 ? ? metalc2 metalc ? ? N MG . MG ? ? ? 1_555 AA HOH . O ? ? B MG 50 B HOH 172 1_555 ? ? ? ? ? ? ? 2.063 ? ? metalc3 metalc ? ? O MG . MG ? ? ? 1_555 BA HOH . O ? ? B MG 51 A HOH 114 1_555 ? ? ? ? ? ? ? 2.296 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 AA HOH . O ? ? B MG 104 B HOH 183 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc5 metalc ? ? K MG . MG ? ? ? 1_555 AA HOH . O ? ? B MG 142 B HOH 200 1_555 ? ? ? ? ? ? ? 2.427 ? ? metalc6 metalc ? ? L MG . MG ? ? ? 1_555 AA HOH . O ? ? B MG 143 B HOH 179 1_555 ? ? ? ? ? ? ? 2.425 ? ? metalc7 metalc ? ? G MG . MG ? ? ? 1_555 AA HOH . O ? ? B MG 150 B HOH 170 1_555 ? ? ? ? ? ? ? 2.318 ? ? metalc8 metalc ? ? G MG . MG ? ? ? 1_555 AA HOH . O ? ? B MG 150 B HOH 199 1_555 ? ? ? ? ? ? ? 2.391 ? ? metalc9 metalc ? ? AA HOH . O ? ? ? 1_555 X MG . MG ? ? B HOH 163 A MG 160 1_555 ? ? ? ? ? ? ? 2.482 ? ? metalc10 metalc ? ? AA HOH . O ? ? ? 1_555 R MG . MG ? ? B HOH 184 A MG 100 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc11 metalc ? ? BA HOH . O ? ? ? 1_555 Z CA . CA ? ? A HOH 43 A CA 49 1_555 ? ? ? ? ? ? ? 2.189 ? ? metalc12 metalc ? ? BA HOH . O ? ? ? 1_555 Z CA . CA ? ? A HOH 44 A CA 49 1_555 ? ? ? ? ? ? ? 2.189 ? ? metalc13 metalc ? ? BA HOH . O ? ? ? 1_555 U MG . MG ? ? A HOH 67 A MG 103 1_555 ? ? ? ? ? ? ? 2.318 ? ? metalc14 metalc ? ? BA HOH . O ? ? ? 1_555 U MG . MG ? ? A HOH 68 A MG 103 1_555 ? ? ? ? ? ? ? 2.399 ? ? metalc15 metalc ? ? R MG . MG ? ? ? 1_555 BA HOH . O ? ? A MG 100 A HOH 126 1_555 ? ? ? ? ? ? ? 2.451 ? ? metalc16 metalc ? ? BA HOH . O ? ? ? 1_555 V CA . CA ? ? A HOH 116 A CA 141 1_555 ? ? ? ? ? ? ? 2.959 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 23 N3 ? ? B G 12 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 23 O2 ? ? B G 12 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 23 N4 ? ? B G 12 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 22 N3 ? ? B G 13 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 22 O2 ? ? B G 13 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 22 N4 ? ? B G 13 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 21 N1 ? ? B C 14 B G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 21 O6 ? ? B C 14 B G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 21 N2 ? ? B C 14 B G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 20 N3 ? ? B G 15 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 20 O2 ? ? B G 15 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 20 N4 ? ? B G 15 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 19 N3 ? ? B G 16 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 19 O2 ? ? B G 16 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 19 N4 ? ? B G 16 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 18 N1 ? ? B U 18 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 18 N6 ? ? B U 18 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 17 N3 ? ? B G 19 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 17 O2 ? ? B G 19 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 17 N4 ? ? B G 19 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 16 N1 ? ? B C 20 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 16 O6 ? ? B C 20 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 16 N2 ? ? B C 20 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 15 N3 ? ? B A 21 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 15 O4 ? ? B A 21 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 14 N3 ? ? B G 22 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 14 O2 ? ? B G 22 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 14 N4 ? ? B G 22 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP B 21 ? TRP B 22 ? TRP A 507 TRP A 508 A 2 ARG B 57 ? ARG B 60 ? ARG A 543 ARG A 546 A 3 ILE B 50 ? VAL B 54 ? ILE A 536 VAL A 540 B 1 THR B 81 ? CYS B 82 ? THR A 567 CYS A 568 B 2 ASP B 116 ? LEU B 119 ? ASP A 602 LEU A 605 B 3 THR B 110 ? ARG B 113 ? THR A 596 ARG A 599 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP B 21 ? N TRP A 507 O TYR B 58 ? O TYR A 544 A 2 3 O TYR B 59 ? O TYR A 545 N THR B 51 ? N THR A 537 B 1 2 N THR B 81 ? N THR A 567 O HIS B 117 ? O HIS A 603 B 2 3 O LEU B 118 ? O LEU A 604 N ARG B 111 ? N ARG A 597 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 98 ? 3 'BINDING SITE FOR RESIDUE CL A 98' AC3 Software B MG 99 ? 2 'BINDING SITE FOR RESIDUE MG B 99' AC4 Software A MG 100 ? 2 'BINDING SITE FOR RESIDUE MG A 100' AC5 Software A CL 101 ? 3 'BINDING SITE FOR RESIDUE CL A 101' AC6 Software A CA 102 ? 2 'BINDING SITE FOR RESIDUE CA A 102' AC7 Software A MG 103 ? 2 'BINDING SITE FOR RESIDUE MG A 103' AC9 Software B MG 104 ? 2 'BINDING SITE FOR RESIDUE MG B 104' AD1 Software B MG 105 ? 1 'BINDING SITE FOR RESIDUE MG B 105' AD2 Software B MG 106 ? 2 'BINDING SITE FOR RESIDUE MG B 106' BC1 Software B MG 150 ? 4 'BINDING SITE FOR RESIDUE MG B 150' BC2 Software B MG 151 ? 1 'BINDING SITE FOR RESIDUE MG B 151' BC3 Software B MG 152 ? 1 'BINDING SITE FOR RESIDUE MG B 152' BC4 Software B MG 140 ? 2 'BINDING SITE FOR RESIDUE MG B 140' BC5 Software A CA 141 ? 2 'BINDING SITE FOR RESIDUE CA A 141' BC6 Software B MG 142 ? 2 'BINDING SITE FOR RESIDUE MG B 142' BC7 Software B MG 143 ? 4 'BINDING SITE FOR RESIDUE MG B 143' BC8 Software A MG 160 ? 4 'BINDING SITE FOR RESIDUE MG A 160' AD3 Software A CA 49 ? 4 'BINDING SITE FOR RESIDUE CA A 49' CC1 Software B MG 50 ? 2 'BINDING SITE FOR RESIDUE MG B 50' CC2 Software B MG 51 ? 2 'BINDING SITE FOR RESIDUE MG B 51' CC3 Software B MG 52 ? 2 'BINDING SITE FOR RESIDUE MG B 52' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HOH BA . ? HOH A 87 . ? 1_555 ? 2 AC1 3 ASP B 18 ? ASP A 504 . ? 1_555 ? 3 AC1 3 TYR B 59 ? TYR A 545 . ? 1_555 ? 4 AC3 2 C A 17 ? C B 28 . ? 1_555 ? 5 AC3 2 A A 18 ? A B 29 . ? 1_555 ? 6 AC4 2 HOH BA . ? HOH A 126 . ? 1_555 ? 7 AC4 2 HOH AA . ? HOH B 184 . ? 1_555 ? 8 AC5 3 HOH BA . ? HOH A 95 . ? 1_555 ? 9 AC5 3 HOH BA . ? HOH A 96 . ? 1_555 ? 10 AC5 3 ARG B 106 ? ARG A 592 . ? 1_555 ? 11 AC6 2 ASP B 75 ? ASP A 561 . ? 1_555 ? 12 AC6 2 LEU B 119 ? LEU A 605 . ? 1_555 ? 13 AC7 2 HOH BA . ? HOH A 67 . ? 1_555 ? 14 AC7 2 HOH BA . ? HOH A 68 . ? 1_555 ? 15 AC9 2 HOH AA . ? HOH B 183 . ? 1_555 ? 16 AC9 2 HOH AA . ? HOH B 201 . ? 1_555 ? 17 AD1 1 A A 10 ? A B 21 . ? 1_555 ? 18 AD2 2 G A 8 ? G B 19 . ? 1_555 ? 19 AD2 2 C A 9 ? C B 20 . ? 1_555 ? 20 BC1 4 G A 4 ? G B 15 . ? 1_555 ? 21 BC1 4 G A 5 ? G B 16 . ? 1_555 ? 22 BC1 4 HOH AA . ? HOH B 170 . ? 1_555 ? 23 BC1 4 HOH AA . ? HOH B 199 . ? 1_555 ? 24 BC2 1 C A 14 ? C B 25 . ? 1_555 ? 25 BC3 1 C A 19 ? C B 30 . ? 1_555 ? 26 BC4 2 LEU B 118 ? LEU A 604 . ? 1_554 ? 27 BC4 2 C A 20 ? C B 31 . ? 1_555 ? 28 BC5 2 HOH BA . ? HOH A 116 . ? 1_555 ? 29 BC5 2 ARG B 72 ? ARG A 558 . ? 1_555 ? 30 BC6 2 G A 8 ? G B 19 . ? 1_555 ? 31 BC6 2 HOH AA . ? HOH B 200 . ? 1_555 ? 32 BC7 4 G A 11 ? G B 22 . ? 1_555 ? 33 BC7 4 G A 11 ? G B 22 . ? 2_556 ? 34 BC7 4 HOH AA . ? HOH B 179 . ? 1_555 ? 35 BC7 4 HOH AA . ? HOH B 195 . ? 1_555 ? 36 BC8 4 LYS B 95 ? LYS A 581 . ? 1_555 ? 37 BC8 4 ILE B 98 ? ILE A 584 . ? 1_555 ? 38 BC8 4 HOH AA . ? HOH B 163 . ? 1_555 ? 39 BC8 4 HOH AA . ? HOH B 197 . ? 1_555 ? 40 AD3 4 HOH BA . ? HOH A 43 . ? 1_555 ? 41 AD3 4 HOH BA . ? HOH A 44 . ? 1_555 ? 42 AD3 4 ASP B 33 ? ASP A 519 . ? 4_556 ? 43 AD3 4 ASP B 73 ? ASP A 559 . ? 1_555 ? 44 CC1 2 G A 1 ? G B 12 . ? 1_555 ? 45 CC1 2 HOH AA . ? HOH B 172 . ? 1_555 ? 46 CC2 2 HOH BA . ? HOH A 107 . ? 1_555 ? 47 CC2 2 HOH BA . ? HOH A 114 . ? 1_555 ? 48 CC3 2 G A 5 ? G B 16 . ? 1_555 ? 49 CC3 2 U A 7 ? U B 18 . ? 1_555 ? # _atom_sites.entry_id 2PJP _atom_sites.fract_transf_matrix[1][1] 0.009662 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000947 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017694 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020754 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA CL MG N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 12 12 G G B . n A 1 2 G 2 13 13 G G B . n A 1 3 C 3 14 14 C C B . n A 1 4 G 4 15 15 G G B . n A 1 5 G 5 16 16 G G B . n A 1 6 U 6 17 17 U U B . n A 1 7 U 7 18 18 U U B . n A 1 8 G 8 19 19 G G B . n A 1 9 C 9 20 20 C C B . n A 1 10 A 10 21 21 A A B . n A 1 11 G 11 22 22 G G B . n A 1 12 G 12 23 23 G G B . n A 1 13 U 13 24 24 U U B . n A 1 14 C 14 25 25 C C B . n A 1 15 U 15 26 26 U U B . n A 1 16 G 16 27 27 G G B . n A 1 17 C 17 28 28 C C B . n A 1 18 A 18 29 29 A A B . n A 1 19 C 19 30 30 C C B . n A 1 20 C 20 31 31 C C B . n A 1 21 G 21 32 32 G G B . n A 1 22 C 22 33 33 C C B . n A 1 23 C 23 34 34 C C B . n B 2 1 PHE 1 487 487 PHE PHE A . n B 2 2 SER 2 488 488 SER SER A . n B 2 3 GLU 3 489 489 GLU ALA A . n B 2 4 GLU 4 490 490 GLU ALA A . n B 2 5 GLN 5 491 491 GLN GLN A . n B 2 6 GLN 6 492 492 GLN ALA A . n B 2 7 ALA 7 493 493 ALA ALA A . n B 2 8 ILE 8 494 494 ILE ILE A . n B 2 9 TRP 9 495 495 TRP TRP A . n B 2 10 GLN 10 496 496 GLN GLN A . n B 2 11 LYS 11 497 497 LYS LYS A . n B 2 12 ALA 12 498 498 ALA ALA A . n B 2 13 GLU 13 499 499 GLU GLU A . n B 2 14 PRO 14 500 500 PRO PRO A . n B 2 15 LEU 15 501 501 LEU LEU A . n B 2 16 PHE 16 502 502 PHE PHE A . n B 2 17 GLY 17 503 503 GLY GLY A . n B 2 18 ASP 18 504 504 ASP ASP A . n B 2 19 GLU 19 505 505 GLU GLU A . n B 2 20 PRO 20 506 506 PRO PRO A . n B 2 21 TRP 21 507 507 TRP TRP A . n B 2 22 TRP 22 508 508 TRP TRP A . n B 2 23 VAL 23 509 509 VAL VAL A . n B 2 24 ARG 24 510 510 ARG ARG A . n B 2 25 ASP 25 511 511 ASP ASP A . n B 2 26 LEU 26 512 512 LEU LEU A . n B 2 27 ALA 27 513 513 ALA ALA A . n B 2 28 LYS 28 514 514 LYS LYS A . n B 2 29 GLU 29 515 515 GLU GLU A . n B 2 30 THR 30 516 516 THR THR A . n B 2 31 GLY 31 517 517 GLY GLY A . n B 2 32 THR 32 518 518 THR THR A . n B 2 33 ASP 33 519 519 ASP ASP A . n B 2 34 GLU 34 520 520 GLU GLU A . n B 2 35 GLN 35 521 521 GLN GLN A . n B 2 36 ALA 36 522 522 ALA ALA A . n B 2 37 MET 37 523 523 MET MET A . n B 2 38 ARG 38 524 524 ARG ARG A . n B 2 39 LEU 39 525 525 LEU LEU A . n B 2 40 THR 40 526 526 THR THR A . n B 2 41 LEU 41 527 527 LEU LEU A . n B 2 42 ARG 42 528 528 ARG ARG A . n B 2 43 GLN 43 529 529 GLN GLN A . n B 2 44 ALA 44 530 530 ALA ALA A . n B 2 45 ALA 45 531 531 ALA ALA A . n B 2 46 GLN 46 532 532 GLN GLN A . n B 2 47 GLN 47 533 533 GLN GLN A . n B 2 48 GLY 48 534 534 GLY GLY A . n B 2 49 ILE 49 535 535 ILE ILE A . n B 2 50 ILE 50 536 536 ILE ILE A . n B 2 51 THR 51 537 537 THR THR A . n B 2 52 ALA 52 538 538 ALA ALA A . n B 2 53 ILE 53 539 539 ILE ILE A . n B 2 54 VAL 54 540 540 VAL VAL A . n B 2 55 LYS 55 541 541 LYS LYS A . n B 2 56 ASP 56 542 542 ASP ASP A . n B 2 57 ARG 57 543 543 ARG ARG A . n B 2 58 TYR 58 544 544 TYR TYR A . n B 2 59 TYR 59 545 545 TYR TYR A . n B 2 60 ARG 60 546 546 ARG ARG A . n B 2 61 ASN 61 547 547 ASN ASN A . n B 2 62 ASP 62 548 548 ASP ASP A . n B 2 63 ARG 63 549 549 ARG ARG A . n B 2 64 ILE 64 550 550 ILE ILE A . n B 2 65 VAL 65 551 551 VAL VAL A . n B 2 66 GLU 66 552 552 GLU GLU A . n B 2 67 PHE 67 553 553 PHE PHE A . n B 2 68 ALA 68 554 554 ALA ALA A . n B 2 69 ASN 69 555 555 ASN ASN A . n B 2 70 MET 70 556 556 MET MET A . n B 2 71 ILE 71 557 557 ILE ILE A . n B 2 72 ARG 72 558 558 ARG ARG A . n B 2 73 ASP 73 559 559 ASP ASP A . n B 2 74 LEU 74 560 560 LEU LEU A . n B 2 75 ASP 75 561 561 ASP ASP A . n B 2 76 GLN 76 562 562 GLN GLN A . n B 2 77 GLU 77 563 563 GLU GLU A . n B 2 78 CYS 78 564 564 CYS CYS A . n B 2 79 GLY 79 565 565 GLY GLY A . n B 2 80 SER 80 566 566 SER SER A . n B 2 81 THR 81 567 567 THR THR A . n B 2 82 CYS 82 568 568 CYS CYS A . n B 2 83 ALA 83 569 569 ALA ALA A . n B 2 84 ALA 84 570 570 ALA ALA A . n B 2 85 ASP 85 571 571 ASP ASP A . n B 2 86 PHE 86 572 572 PHE PHE A . n B 2 87 ARG 87 573 573 ARG ARG A . n B 2 88 ASP 88 574 574 ASP ASP A . n B 2 89 ARG 89 575 575 ARG ARG A . n B 2 90 LEU 90 576 576 LEU LEU A . n B 2 91 GLY 91 577 577 GLY GLY A . n B 2 92 VAL 92 578 578 VAL VAL A . n B 2 93 GLY 93 579 579 GLY GLY A . n B 2 94 ARG 94 580 580 ARG ARG A . n B 2 95 LYS 95 581 581 LYS LYS A . n B 2 96 LEU 96 582 582 LEU LEU A . n B 2 97 ALA 97 583 583 ALA ALA A . n B 2 98 ILE 98 584 584 ILE ILE A . n B 2 99 GLN 99 585 585 GLN GLN A . n B 2 100 ILE 100 586 586 ILE ILE A . n B 2 101 LEU 101 587 587 LEU LEU A . n B 2 102 GLU 102 588 588 GLU GLU A . n B 2 103 TYR 103 589 589 TYR TYR A . n B 2 104 PHE 104 590 590 PHE PHE A . n B 2 105 ASP 105 591 591 ASP ASP A . n B 2 106 ARG 106 592 592 ARG ARG A . n B 2 107 ILE 107 593 593 ILE ILE A . n B 2 108 GLY 108 594 594 GLY GLY A . n B 2 109 PHE 109 595 595 PHE PHE A . n B 2 110 THR 110 596 596 THR THR A . n B 2 111 ARG 111 597 597 ARG ARG A . n B 2 112 ARG 112 598 598 ARG ARG A . n B 2 113 ARG 113 599 599 ARG ALA A . n B 2 114 GLY 114 600 600 GLY GLY A . n B 2 115 ASN 115 601 601 ASN ASN A . n B 2 116 ASP 116 602 602 ASP ASP A . n B 2 117 HIS 117 603 603 HIS HIS A . n B 2 118 LEU 118 604 604 LEU LEU A . n B 2 119 LEU 119 605 605 LEU LEU A . n B 2 120 ARG 120 606 606 ARG ARG A . n B 2 121 ASP 121 607 607 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 99 99 MG MG B . D 3 MG 1 104 104 MG MG B . E 3 MG 1 105 105 MG MG B . F 3 MG 1 106 106 MG MG B . G 3 MG 1 150 150 MG MG B . H 3 MG 1 151 151 MG MG B . I 3 MG 1 152 152 MG MG B . J 3 MG 1 140 140 MG MG B . K 3 MG 1 142 142 MG MG B . L 3 MG 1 143 143 MG MG B . M 3 MG 1 158 158 MG MG B . N 3 MG 1 50 50 MG MG B . O 3 MG 1 51 51 MG MG B . P 3 MG 1 52 52 MG MG B . Q 4 CL 1 98 98 CL CL A . R 3 MG 1 100 100 MG MG A . S 4 CL 1 101 101 CL CL A . T 5 CA 1 102 102 CA CA A . U 3 MG 1 103 103 MG MG A . V 5 CA 1 141 141 CA CA A . W 6 NA 1 159 159 NA NA A . X 3 MG 1 160 160 MG MG A . Y 5 CA 1 161 161 CA CA A . Z 5 CA 1 49 49 CA CA A . AA 7 HOH 1 159 8 HOH HOH B . AA 7 HOH 2 160 9 HOH HOH B . AA 7 HOH 3 161 10 HOH HOH B . AA 7 HOH 4 162 11 HOH HOH B . AA 7 HOH 5 163 12 HOH HOH B . AA 7 HOH 6 164 15 HOH HOH B . AA 7 HOH 7 165 16 HOH HOH B . AA 7 HOH 8 166 21 HOH HOH B . AA 7 HOH 9 167 22 HOH HOH B . AA 7 HOH 10 168 23 HOH HOH B . AA 7 HOH 11 169 35 HOH HOH B . AA 7 HOH 12 170 38 HOH HOH B . AA 7 HOH 13 171 53 HOH HOH B . AA 7 HOH 14 172 54 HOH HOH B . AA 7 HOH 15 173 55 HOH HOH B . AA 7 HOH 16 174 56 HOH HOH B . AA 7 HOH 17 175 57 HOH HOH B . AA 7 HOH 18 176 58 HOH HOH B . AA 7 HOH 19 177 64 HOH HOH B . AA 7 HOH 20 178 65 HOH HOH B . AA 7 HOH 21 179 70 HOH HOH B . AA 7 HOH 22 180 72 HOH HOH B . AA 7 HOH 23 181 74 HOH HOH B . AA 7 HOH 24 182 80 HOH HOH B . AA 7 HOH 25 183 83 HOH HOH B . AA 7 HOH 26 184 85 HOH HOH B . AA 7 HOH 27 185 88 HOH HOH B . AA 7 HOH 28 186 89 HOH HOH B . AA 7 HOH 29 187 90 HOH HOH B . AA 7 HOH 30 188 92 HOH HOH B . AA 7 HOH 31 189 93 HOH HOH B . AA 7 HOH 32 190 94 HOH HOH B . AA 7 HOH 33 191 97 HOH HOH B . AA 7 HOH 34 192 108 HOH HOH B . AA 7 HOH 35 193 113 HOH HOH B . AA 7 HOH 36 194 118 HOH HOH B . AA 7 HOH 37 195 120 HOH HOH B . AA 7 HOH 38 196 124 HOH HOH B . AA 7 HOH 39 197 127 HOH HOH B . AA 7 HOH 40 198 130 HOH HOH B . AA 7 HOH 41 199 145 HOH HOH B . AA 7 HOH 42 200 146 HOH HOH B . AA 7 HOH 43 201 147 HOH HOH B . AA 7 HOH 44 202 153 HOH HOH B . AA 7 HOH 45 203 154 HOH HOH B . BA 7 HOH 1 1 1 HOH HOH A . BA 7 HOH 2 2 2 HOH HOH A . BA 7 HOH 3 3 3 HOH HOH A . BA 7 HOH 4 4 4 HOH HOH A . BA 7 HOH 5 5 5 HOH HOH A . BA 7 HOH 6 14 14 HOH HOH A . BA 7 HOH 7 19 19 HOH HOH A . BA 7 HOH 8 24 24 HOH HOH A . BA 7 HOH 9 25 25 HOH HOH A . BA 7 HOH 10 26 26 HOH HOH A . BA 7 HOH 11 27 27 HOH HOH A . BA 7 HOH 12 29 29 HOH HOH A . BA 7 HOH 13 30 30 HOH HOH A . BA 7 HOH 14 32 32 HOH HOH A . BA 7 HOH 15 33 33 HOH HOH A . BA 7 HOH 16 34 34 HOH HOH A . BA 7 HOH 17 39 39 HOH HOH A . BA 7 HOH 18 41 41 HOH HOH A . BA 7 HOH 19 42 42 HOH HOH A . BA 7 HOH 20 43 43 HOH HOH A . BA 7 HOH 21 44 44 HOH HOH A . BA 7 HOH 22 45 45 HOH HOH A . BA 7 HOH 23 46 46 HOH HOH A . BA 7 HOH 24 48 48 HOH HOH A . BA 7 HOH 25 59 59 HOH HOH A . BA 7 HOH 26 60 60 HOH HOH A . BA 7 HOH 27 61 61 HOH HOH A . BA 7 HOH 28 62 62 HOH HOH A . BA 7 HOH 29 66 66 HOH HOH A . BA 7 HOH 30 67 67 HOH HOH A . BA 7 HOH 31 68 68 HOH HOH A . BA 7 HOH 32 69 69 HOH HOH A . BA 7 HOH 33 75 75 HOH HOH A . BA 7 HOH 34 76 76 HOH HOH A . BA 7 HOH 35 77 77 HOH HOH A . BA 7 HOH 36 78 78 HOH HOH A . BA 7 HOH 37 79 79 HOH HOH A . BA 7 HOH 38 84 84 HOH HOH A . BA 7 HOH 39 86 86 HOH HOH A . BA 7 HOH 40 87 87 HOH HOH A . BA 7 HOH 41 95 95 HOH HOH A . BA 7 HOH 42 96 96 HOH HOH A . BA 7 HOH 43 107 107 HOH HOH A . BA 7 HOH 44 109 109 HOH HOH A . BA 7 HOH 45 110 110 HOH HOH A . BA 7 HOH 46 111 111 HOH HOH A . BA 7 HOH 47 114 114 HOH HOH A . BA 7 HOH 48 116 116 HOH HOH A . BA 7 HOH 49 117 117 HOH HOH A . BA 7 HOH 50 119 119 HOH HOH A . BA 7 HOH 51 121 121 HOH HOH A . BA 7 HOH 52 122 122 HOH HOH A . BA 7 HOH 53 123 123 HOH HOH A . BA 7 HOH 54 125 125 HOH HOH A . BA 7 HOH 55 126 126 HOH HOH A . BA 7 HOH 56 128 128 HOH HOH A . BA 7 HOH 57 129 129 HOH HOH A . BA 7 HOH 58 132 132 HOH HOH A . BA 7 HOH 59 133 133 HOH HOH A . BA 7 HOH 60 134 134 HOH HOH A . BA 7 HOH 61 135 135 HOH HOH A . BA 7 HOH 62 136 136 HOH HOH A . BA 7 HOH 63 144 144 HOH HOH A . BA 7 HOH 64 148 148 HOH HOH A . BA 7 HOH 65 155 155 HOH HOH A . BA 7 HOH 66 156 156 HOH HOH A . BA 7 HOH 67 157 157 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A G 1 ? B G 12 ? 1_555 MG ? N MG . ? B MG 50 ? 1_555 O ? AA HOH . ? B HOH 172 ? 1_555 78.4 ? 2 O ? AA HOH . ? B HOH 170 ? 1_555 MG ? G MG . ? B MG 150 ? 1_555 O ? AA HOH . ? B HOH 199 ? 1_555 151.4 ? 3 O ? AA HOH . ? B HOH 184 ? 1_555 MG ? R MG . ? A MG 100 ? 1_555 O ? BA HOH . ? A HOH 126 ? 1_555 152.0 ? 4 O ? BA HOH . ? A HOH 43 ? 1_555 CA ? Z CA . ? A CA 49 ? 1_555 O ? BA HOH . ? A HOH 44 ? 1_555 120.8 ? 5 O ? BA HOH . ? A HOH 67 ? 1_555 MG ? U MG . ? A MG 103 ? 1_555 O ? BA HOH . ? A HOH 68 ? 1_555 141.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref_seq 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.pdbx_dist_value' 17 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 18 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 24 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 3 'Structure model' '_struct_ref_seq.db_align_beg' 30 3 'Structure model' '_struct_ref_seq.db_align_end' 31 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_phasing_MR.entry_id 2PJP _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.300 _pdbx_phasing_MR.d_res_low_rotation 18.160 _pdbx_phasing_MR.d_res_high_translation 2.300 _pdbx_phasing_MR.d_res_low_translation 18.160 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 1 PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 Xnemo . ? ? ? ? 'data collection' ? ? ? 5 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD2 A ASP 559 ? ? CA A CA 49 ? ? 1.68 2 1 NE A ARG 546 ? ? OD1 A ASP 548 ? ? 1.94 3 1 O6 B G 12 ? ? O B HOH 172 ? ? 1.96 4 1 N3 B G 12 ? ? O B HOH 202 ? ? 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O5'" B U 18 ? ? "C5'" B U 18 ? ? 1.314 1.420 -0.106 0.009 N 2 1 N3 B G 19 ? ? C4 B G 19 ? ? 1.395 1.350 0.045 0.007 N 3 1 N9 B A 21 ? ? C4 B A 21 ? ? 1.435 1.374 0.061 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 B G 15 ? ? C6 B G 15 ? ? O6 B G 15 ? ? 123.92 119.90 4.02 0.60 N 2 1 C8 B G 16 ? ? N9 B G 16 ? ? C4 B G 16 ? ? 109.16 106.40 2.76 0.40 N 3 1 "O5'" B U 17 ? ? "C5'" B U 17 ? ? "C4'" B U 17 ? ? 102.59 109.40 -6.81 0.80 N 4 1 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 97.76 108.20 -10.44 0.80 N 5 1 "C5'" B U 18 ? ? "C4'" B U 18 ? ? "O4'" B U 18 ? ? 98.66 109.10 -10.44 1.20 N 6 1 C6 B U 18 ? ? N1 B U 18 ? ? C2 B U 18 ? ? 116.80 121.00 -4.20 0.60 N 7 1 N1 B G 19 ? ? C6 B G 19 ? ? O6 B G 19 ? ? 116.08 119.90 -3.82 0.60 N 8 1 C2 B A 21 ? ? N3 B A 21 ? ? C4 B A 21 ? ? 114.15 110.60 3.55 0.50 N 9 1 C4 B A 21 ? ? C5 B A 21 ? ? N7 B A 21 ? ? 106.94 110.70 -3.76 0.50 N 10 1 C5 B A 21 ? ? N7 B A 21 ? ? C8 B A 21 ? ? 110.00 103.90 6.10 0.50 N 11 1 N7 B A 21 ? ? C8 B A 21 ? ? N9 B A 21 ? ? 109.73 113.80 -4.07 0.50 N 12 1 P B G 22 ? ? "O5'" B G 22 ? ? "C5'" B G 22 ? ? 133.35 120.90 12.45 1.60 N 13 1 "O4'" B G 22 ? ? "C1'" B G 22 ? ? N9 B G 22 ? ? 113.77 108.50 5.27 0.70 N 14 1 N1 B G 22 ? ? C2 B G 22 ? ? N3 B G 22 ? ? 119.30 123.90 -4.60 0.60 N 15 1 C2 B G 22 ? ? N3 B G 22 ? ? C4 B G 22 ? ? 116.48 111.90 4.58 0.50 N 16 1 N9 B G 22 ? ? C4 B G 22 ? ? C5 B G 22 ? ? 108.13 105.40 2.73 0.40 N 17 1 "O5'" B U 24 ? ? "C5'" B U 24 ? ? "C4'" B U 24 ? ? 102.82 109.40 -6.58 0.80 N 18 1 "O5'" B C 25 ? ? P B C 25 ? ? OP1 B C 25 ? ? 118.22 110.70 7.52 1.20 N 19 1 N1 B C 25 ? ? "C1'" B C 25 ? ? "C2'" B C 25 ? ? 122.73 114.00 8.73 1.30 N 20 1 "C3'" B C 25 ? ? "O3'" B C 25 ? ? P B U 26 ? ? 128.29 119.70 8.59 1.20 Y 21 1 "C3'" B U 26 ? ? "C2'" B U 26 ? ? "C1'" B U 26 ? ? 95.28 101.30 -6.02 0.70 N 22 1 "O4'" B U 26 ? ? "C1'" B U 26 ? ? N1 B U 26 ? ? 112.74 108.50 4.24 0.70 N 23 1 C2 B U 26 ? ? N3 B U 26 ? ? C4 B U 26 ? ? 123.32 127.00 -3.68 0.60 N 24 1 N1 B C 28 ? ? C2 B C 28 ? ? O2 B C 28 ? ? 123.23 118.90 4.33 0.60 N 25 1 N1 B A 29 ? ? C2 B A 29 ? ? N3 B A 29 ? ? 126.05 129.30 -3.25 0.50 N 26 1 NE A ARG 543 ? ? CZ A ARG 543 ? ? NH1 A ARG 543 ? ? 126.17 120.30 5.87 0.50 N 27 1 NE A ARG 543 ? ? CZ A ARG 543 ? ? NH2 A ARG 543 ? ? 115.75 120.30 -4.55 0.50 N 28 1 NE A ARG 575 ? ? CZ A ARG 575 ? ? NH2 A ARG 575 ? ? 115.33 120.30 -4.97 0.50 N 29 1 NE A ARG 580 ? ? CZ A ARG 580 ? ? NH2 A ARG 580 ? ? 116.22 120.30 -4.08 0.50 N 30 1 NE A ARG 592 ? ? CZ A ARG 592 ? ? NH1 A ARG 592 ? ? 123.32 120.30 3.02 0.50 N 31 1 NE A ARG 592 ? ? CZ A ARG 592 ? ? NH2 A ARG 592 ? ? 116.47 120.30 -3.83 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 488 ? ? -56.00 -176.81 2 1 VAL A 509 ? ? -25.56 -60.30 3 1 ASP A 542 ? ? 86.09 2.20 4 1 ARG A 606 ? ? -104.92 -61.04 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 489 ? CG ? B GLU 3 CG 2 1 Y 1 A GLU 489 ? CD ? B GLU 3 CD 3 1 Y 1 A GLU 489 ? OE1 ? B GLU 3 OE1 4 1 Y 1 A GLU 489 ? OE2 ? B GLU 3 OE2 5 1 Y 1 A GLU 490 ? CG ? B GLU 4 CG 6 1 Y 1 A GLU 490 ? CD ? B GLU 4 CD 7 1 Y 1 A GLU 490 ? OE1 ? B GLU 4 OE1 8 1 Y 1 A GLU 490 ? OE2 ? B GLU 4 OE2 9 1 Y 1 A GLN 492 ? CG ? B GLN 6 CG 10 1 Y 1 A GLN 492 ? CD ? B GLN 6 CD 11 1 Y 1 A GLN 492 ? OE1 ? B GLN 6 OE1 12 1 Y 1 A GLN 492 ? NE2 ? B GLN 6 NE2 13 1 Y 1 A ARG 599 ? CG ? B ARG 113 CG 14 1 Y 1 A ARG 599 ? CD ? B ARG 113 CD 15 1 Y 1 A ARG 599 ? NE ? B ARG 113 NE 16 1 Y 1 A ARG 599 ? CZ ? B ARG 113 CZ 17 1 Y 1 A ARG 599 ? NH1 ? B ARG 113 NH1 18 1 Y 1 A ARG 599 ? NH2 ? B ARG 113 NH2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CA CA CA N N 146 CL CL CL N N 147 CYS N N N N 148 CYS CA C N R 149 CYS C C N N 150 CYS O O N N 151 CYS CB C N N 152 CYS SG S N N 153 CYS OXT O N N 154 CYS H H N N 155 CYS H2 H N N 156 CYS HA H N N 157 CYS HB2 H N N 158 CYS HB3 H N N 159 CYS HG H N N 160 CYS HXT H N N 161 G OP3 O N N 162 G P P N N 163 G OP1 O N N 164 G OP2 O N N 165 G "O5'" O N N 166 G "C5'" C N N 167 G "C4'" C N R 168 G "O4'" O N N 169 G "C3'" C N S 170 G "O3'" O N N 171 G "C2'" C N R 172 G "O2'" O N N 173 G "C1'" C N R 174 G N9 N Y N 175 G C8 C Y N 176 G N7 N Y N 177 G C5 C Y N 178 G C6 C N N 179 G O6 O N N 180 G N1 N N N 181 G C2 C N N 182 G N2 N N N 183 G N3 N N N 184 G C4 C Y N 185 G HOP3 H N N 186 G HOP2 H N N 187 G "H5'" H N N 188 G "H5''" H N N 189 G "H4'" H N N 190 G "H3'" H N N 191 G "HO3'" H N N 192 G "H2'" H N N 193 G "HO2'" H N N 194 G "H1'" H N N 195 G H8 H N N 196 G H1 H N N 197 G H21 H N N 198 G H22 H N N 199 GLN N N N N 200 GLN CA C N S 201 GLN C C N N 202 GLN O O N N 203 GLN CB C N N 204 GLN CG C N N 205 GLN CD C N N 206 GLN OE1 O N N 207 GLN NE2 N N N 208 GLN OXT O N N 209 GLN H H N N 210 GLN H2 H N N 211 GLN HA H N N 212 GLN HB2 H N N 213 GLN HB3 H N N 214 GLN HG2 H N N 215 GLN HG3 H N N 216 GLN HE21 H N N 217 GLN HE22 H N N 218 GLN HXT H N N 219 GLU N N N N 220 GLU CA C N S 221 GLU C C N N 222 GLU O O N N 223 GLU CB C N N 224 GLU CG C N N 225 GLU CD C N N 226 GLU OE1 O N N 227 GLU OE2 O N N 228 GLU OXT O N N 229 GLU H H N N 230 GLU H2 H N N 231 GLU HA H N N 232 GLU HB2 H N N 233 GLU HB3 H N N 234 GLU HG2 H N N 235 GLU HG3 H N N 236 GLU HE2 H N N 237 GLU HXT H N N 238 GLY N N N N 239 GLY CA C N N 240 GLY C C N N 241 GLY O O N N 242 GLY OXT O N N 243 GLY H H N N 244 GLY H2 H N N 245 GLY HA2 H N N 246 GLY HA3 H N N 247 GLY HXT H N N 248 HIS N N N N 249 HIS CA C N S 250 HIS C C N N 251 HIS O O N N 252 HIS CB C N N 253 HIS CG C Y N 254 HIS ND1 N Y N 255 HIS CD2 C Y N 256 HIS CE1 C Y N 257 HIS NE2 N Y N 258 HIS OXT O N N 259 HIS H H N N 260 HIS H2 H N N 261 HIS HA H N N 262 HIS HB2 H N N 263 HIS HB3 H N N 264 HIS HD1 H N N 265 HIS HD2 H N N 266 HIS HE1 H N N 267 HIS HE2 H N N 268 HIS HXT H N N 269 HOH O O N N 270 HOH H1 H N N 271 HOH H2 H N N 272 ILE N N N N 273 ILE CA C N S 274 ILE C C N N 275 ILE O O N N 276 ILE CB C N S 277 ILE CG1 C N N 278 ILE CG2 C N N 279 ILE CD1 C N N 280 ILE OXT O N N 281 ILE H H N N 282 ILE H2 H N N 283 ILE HA H N N 284 ILE HB H N N 285 ILE HG12 H N N 286 ILE HG13 H N N 287 ILE HG21 H N N 288 ILE HG22 H N N 289 ILE HG23 H N N 290 ILE HD11 H N N 291 ILE HD12 H N N 292 ILE HD13 H N N 293 ILE HXT H N N 294 LEU N N N N 295 LEU CA C N S 296 LEU C C N N 297 LEU O O N N 298 LEU CB C N N 299 LEU CG C N N 300 LEU CD1 C N N 301 LEU CD2 C N N 302 LEU OXT O N N 303 LEU H H N N 304 LEU H2 H N N 305 LEU HA H N N 306 LEU HB2 H N N 307 LEU HB3 H N N 308 LEU HG H N N 309 LEU HD11 H N N 310 LEU HD12 H N N 311 LEU HD13 H N N 312 LEU HD21 H N N 313 LEU HD22 H N N 314 LEU HD23 H N N 315 LEU HXT H N N 316 LYS N N N N 317 LYS CA C N S 318 LYS C C N N 319 LYS O O N N 320 LYS CB C N N 321 LYS CG C N N 322 LYS CD C N N 323 LYS CE C N N 324 LYS NZ N N N 325 LYS OXT O N N 326 LYS H H N N 327 LYS H2 H N N 328 LYS HA H N N 329 LYS HB2 H N N 330 LYS HB3 H N N 331 LYS HG2 H N N 332 LYS HG3 H N N 333 LYS HD2 H N N 334 LYS HD3 H N N 335 LYS HE2 H N N 336 LYS HE3 H N N 337 LYS HZ1 H N N 338 LYS HZ2 H N N 339 LYS HZ3 H N N 340 LYS HXT H N N 341 MET N N N N 342 MET CA C N S 343 MET C C N N 344 MET O O N N 345 MET CB C N N 346 MET CG C N N 347 MET SD S N N 348 MET CE C N N 349 MET OXT O N N 350 MET H H N N 351 MET H2 H N N 352 MET HA H N N 353 MET HB2 H N N 354 MET HB3 H N N 355 MET HG2 H N N 356 MET HG3 H N N 357 MET HE1 H N N 358 MET HE2 H N N 359 MET HE3 H N N 360 MET HXT H N N 361 MG MG MG N N 362 NA NA NA N N 363 PHE N N N N 364 PHE CA C N S 365 PHE C C N N 366 PHE O O N N 367 PHE CB C N N 368 PHE CG C Y N 369 PHE CD1 C Y N 370 PHE CD2 C Y N 371 PHE CE1 C Y N 372 PHE CE2 C Y N 373 PHE CZ C Y N 374 PHE OXT O N N 375 PHE H H N N 376 PHE H2 H N N 377 PHE HA H N N 378 PHE HB2 H N N 379 PHE HB3 H N N 380 PHE HD1 H N N 381 PHE HD2 H N N 382 PHE HE1 H N N 383 PHE HE2 H N N 384 PHE HZ H N N 385 PHE HXT H N N 386 PRO N N N N 387 PRO CA C N S 388 PRO C C N N 389 PRO O O N N 390 PRO CB C N N 391 PRO CG C N N 392 PRO CD C N N 393 PRO OXT O N N 394 PRO H H N N 395 PRO HA H N N 396 PRO HB2 H N N 397 PRO HB3 H N N 398 PRO HG2 H N N 399 PRO HG3 H N N 400 PRO HD2 H N N 401 PRO HD3 H N N 402 PRO HXT H N N 403 SER N N N N 404 SER CA C N S 405 SER C C N N 406 SER O O N N 407 SER CB C N N 408 SER OG O N N 409 SER OXT O N N 410 SER H H N N 411 SER H2 H N N 412 SER HA H N N 413 SER HB2 H N N 414 SER HB3 H N N 415 SER HG H N N 416 SER HXT H N N 417 THR N N N N 418 THR CA C N S 419 THR C C N N 420 THR O O N N 421 THR CB C N R 422 THR OG1 O N N 423 THR CG2 C N N 424 THR OXT O N N 425 THR H H N N 426 THR H2 H N N 427 THR HA H N N 428 THR HB H N N 429 THR HG1 H N N 430 THR HG21 H N N 431 THR HG22 H N N 432 THR HG23 H N N 433 THR HXT H N N 434 TRP N N N N 435 TRP CA C N S 436 TRP C C N N 437 TRP O O N N 438 TRP CB C N N 439 TRP CG C Y N 440 TRP CD1 C Y N 441 TRP CD2 C Y N 442 TRP NE1 N Y N 443 TRP CE2 C Y N 444 TRP CE3 C Y N 445 TRP CZ2 C Y N 446 TRP CZ3 C Y N 447 TRP CH2 C Y N 448 TRP OXT O N N 449 TRP H H N N 450 TRP H2 H N N 451 TRP HA H N N 452 TRP HB2 H N N 453 TRP HB3 H N N 454 TRP HD1 H N N 455 TRP HE1 H N N 456 TRP HE3 H N N 457 TRP HZ2 H N N 458 TRP HZ3 H N N 459 TRP HH2 H N N 460 TRP HXT H N N 461 TYR N N N N 462 TYR CA C N S 463 TYR C C N N 464 TYR O O N N 465 TYR CB C N N 466 TYR CG C Y N 467 TYR CD1 C Y N 468 TYR CD2 C Y N 469 TYR CE1 C Y N 470 TYR CE2 C Y N 471 TYR CZ C Y N 472 TYR OH O N N 473 TYR OXT O N N 474 TYR H H N N 475 TYR H2 H N N 476 TYR HA H N N 477 TYR HB2 H N N 478 TYR HB3 H N N 479 TYR HD1 H N N 480 TYR HD2 H N N 481 TYR HE1 H N N 482 TYR HE2 H N N 483 TYR HH H N N 484 TYR HXT H N N 485 U OP3 O N N 486 U P P N N 487 U OP1 O N N 488 U OP2 O N N 489 U "O5'" O N N 490 U "C5'" C N N 491 U "C4'" C N R 492 U "O4'" O N N 493 U "C3'" C N S 494 U "O3'" O N N 495 U "C2'" C N R 496 U "O2'" O N N 497 U "C1'" C N R 498 U N1 N N N 499 U C2 C N N 500 U O2 O N N 501 U N3 N N N 502 U C4 C N N 503 U O4 O N N 504 U C5 C N N 505 U C6 C N N 506 U HOP3 H N N 507 U HOP2 H N N 508 U "H5'" H N N 509 U "H5''" H N N 510 U "H4'" H N N 511 U "H3'" H N N 512 U "HO3'" H N N 513 U "H2'" H N N 514 U "HO2'" H N N 515 U "H1'" H N N 516 U H3 H N N 517 U H5 H N N 518 U H6 H N N 519 VAL N N N N 520 VAL CA C N S 521 VAL C C N N 522 VAL O O N N 523 VAL CB C N N 524 VAL CG1 C N N 525 VAL CG2 C N N 526 VAL OXT O N N 527 VAL H H N N 528 VAL H2 H N N 529 VAL HA H N N 530 VAL HB H N N 531 VAL HG11 H N N 532 VAL HG12 H N N 533 VAL HG13 H N N 534 VAL HG21 H N N 535 VAL HG22 H N N 536 VAL HG23 H N N 537 VAL HXT H N N 538 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 PHE N CA sing N N 352 PHE N H sing N N 353 PHE N H2 sing N N 354 PHE CA C sing N N 355 PHE CA CB sing N N 356 PHE CA HA sing N N 357 PHE C O doub N N 358 PHE C OXT sing N N 359 PHE CB CG sing N N 360 PHE CB HB2 sing N N 361 PHE CB HB3 sing N N 362 PHE CG CD1 doub Y N 363 PHE CG CD2 sing Y N 364 PHE CD1 CE1 sing Y N 365 PHE CD1 HD1 sing N N 366 PHE CD2 CE2 doub Y N 367 PHE CD2 HD2 sing N N 368 PHE CE1 CZ doub Y N 369 PHE CE1 HE1 sing N N 370 PHE CE2 CZ sing Y N 371 PHE CE2 HE2 sing N N 372 PHE CZ HZ sing N N 373 PHE OXT HXT sing N N 374 PRO N CA sing N N 375 PRO N CD sing N N 376 PRO N H sing N N 377 PRO CA C sing N N 378 PRO CA CB sing N N 379 PRO CA HA sing N N 380 PRO C O doub N N 381 PRO C OXT sing N N 382 PRO CB CG sing N N 383 PRO CB HB2 sing N N 384 PRO CB HB3 sing N N 385 PRO CG CD sing N N 386 PRO CG HG2 sing N N 387 PRO CG HG3 sing N N 388 PRO CD HD2 sing N N 389 PRO CD HD3 sing N N 390 PRO OXT HXT sing N N 391 SER N CA sing N N 392 SER N H sing N N 393 SER N H2 sing N N 394 SER CA C sing N N 395 SER CA CB sing N N 396 SER CA HA sing N N 397 SER C O doub N N 398 SER C OXT sing N N 399 SER CB OG sing N N 400 SER CB HB2 sing N N 401 SER CB HB3 sing N N 402 SER OG HG sing N N 403 SER OXT HXT sing N N 404 THR N CA sing N N 405 THR N H sing N N 406 THR N H2 sing N N 407 THR CA C sing N N 408 THR CA CB sing N N 409 THR CA HA sing N N 410 THR C O doub N N 411 THR C OXT sing N N 412 THR CB OG1 sing N N 413 THR CB CG2 sing N N 414 THR CB HB sing N N 415 THR OG1 HG1 sing N N 416 THR CG2 HG21 sing N N 417 THR CG2 HG22 sing N N 418 THR CG2 HG23 sing N N 419 THR OXT HXT sing N N 420 TRP N CA sing N N 421 TRP N H sing N N 422 TRP N H2 sing N N 423 TRP CA C sing N N 424 TRP CA CB sing N N 425 TRP CA HA sing N N 426 TRP C O doub N N 427 TRP C OXT sing N N 428 TRP CB CG sing N N 429 TRP CB HB2 sing N N 430 TRP CB HB3 sing N N 431 TRP CG CD1 doub Y N 432 TRP CG CD2 sing Y N 433 TRP CD1 NE1 sing Y N 434 TRP CD1 HD1 sing N N 435 TRP CD2 CE2 doub Y N 436 TRP CD2 CE3 sing Y N 437 TRP NE1 CE2 sing Y N 438 TRP NE1 HE1 sing N N 439 TRP CE2 CZ2 sing Y N 440 TRP CE3 CZ3 doub Y N 441 TRP CE3 HE3 sing N N 442 TRP CZ2 CH2 doub Y N 443 TRP CZ2 HZ2 sing N N 444 TRP CZ3 CH2 sing Y N 445 TRP CZ3 HZ3 sing N N 446 TRP CH2 HH2 sing N N 447 TRP OXT HXT sing N N 448 TYR N CA sing N N 449 TYR N H sing N N 450 TYR N H2 sing N N 451 TYR CA C sing N N 452 TYR CA CB sing N N 453 TYR CA HA sing N N 454 TYR C O doub N N 455 TYR C OXT sing N N 456 TYR CB CG sing N N 457 TYR CB HB2 sing N N 458 TYR CB HB3 sing N N 459 TYR CG CD1 doub Y N 460 TYR CG CD2 sing Y N 461 TYR CD1 CE1 sing Y N 462 TYR CD1 HD1 sing N N 463 TYR CD2 CE2 doub Y N 464 TYR CD2 HD2 sing N N 465 TYR CE1 CZ doub Y N 466 TYR CE1 HE1 sing N N 467 TYR CE2 CZ sing Y N 468 TYR CE2 HE2 sing N N 469 TYR CZ OH sing N N 470 TYR OH HH sing N N 471 TYR OXT HXT sing N N 472 U OP3 P sing N N 473 U OP3 HOP3 sing N N 474 U P OP1 doub N N 475 U P OP2 sing N N 476 U P "O5'" sing N N 477 U OP2 HOP2 sing N N 478 U "O5'" "C5'" sing N N 479 U "C5'" "C4'" sing N N 480 U "C5'" "H5'" sing N N 481 U "C5'" "H5''" sing N N 482 U "C4'" "O4'" sing N N 483 U "C4'" "C3'" sing N N 484 U "C4'" "H4'" sing N N 485 U "O4'" "C1'" sing N N 486 U "C3'" "O3'" sing N N 487 U "C3'" "C2'" sing N N 488 U "C3'" "H3'" sing N N 489 U "O3'" "HO3'" sing N N 490 U "C2'" "O2'" sing N N 491 U "C2'" "C1'" sing N N 492 U "C2'" "H2'" sing N N 493 U "O2'" "HO2'" sing N N 494 U "C1'" N1 sing N N 495 U "C1'" "H1'" sing N N 496 U N1 C2 sing N N 497 U N1 C6 sing N N 498 U C2 O2 doub N N 499 U C2 N3 sing N N 500 U N3 C4 sing N N 501 U N3 H3 sing N N 502 U C4 O4 doub N N 503 U C4 C5 sing N N 504 U C5 C6 doub N N 505 U C5 H5 sing N N 506 U C6 H6 sing N N 507 VAL N CA sing N N 508 VAL N H sing N N 509 VAL N H2 sing N N 510 VAL CA C sing N N 511 VAL CA CB sing N N 512 VAL CA HA sing N N 513 VAL C O doub N N 514 VAL C OXT sing N N 515 VAL CB CG1 sing N N 516 VAL CB CG2 sing N N 517 VAL CB HB sing N N 518 VAL CG1 HG11 sing N N 519 VAL CG1 HG12 sing N N 520 VAL CG1 HG13 sing N N 521 VAL CG2 HG21 sing N N 522 VAL CG2 HG22 sing N N 523 VAL CG2 HG23 sing N N 524 VAL OXT HXT sing N N 525 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2PJP 'double helix' 2PJP 'a-form double helix' 2PJP 'hairpin loop' 2PJP 'bulge loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 23 1_555 -0.202 -0.463 0.014 -6.646 -9.093 -1.619 1 B_G12:C34_B B 12 ? B 34 ? 19 1 1 A G 2 1_555 A C 22 1_555 -0.193 -0.048 0.312 2.248 -13.141 6.161 2 B_G13:C33_B B 13 ? B 33 ? 19 1 1 A C 3 1_555 A G 21 1_555 0.797 0.030 0.206 6.020 -12.714 5.018 3 B_C14:G32_B B 14 ? B 32 ? 19 1 1 A G 4 1_555 A C 20 1_555 0.064 -0.090 0.329 -6.514 -19.110 4.134 4 B_G15:C31_B B 15 ? B 31 ? 19 1 1 A G 5 1_555 A C 19 1_555 -0.235 -0.216 0.235 -4.038 -10.493 -2.199 5 B_G16:C30_B B 16 ? B 30 ? 19 1 1 A U 7 1_555 A A 18 1_555 0.017 -0.106 0.308 -2.190 -7.847 3.612 6 B_U18:A29_B B 18 ? B 29 ? 20 1 1 A G 8 1_555 A C 17 1_555 -0.374 -0.233 0.171 -1.747 -18.582 1.504 7 B_G19:C28_B B 19 ? B 28 ? 19 1 1 A C 9 1_555 A G 16 1_555 0.273 -0.226 -0.053 -2.659 -11.337 -0.865 8 B_C20:G27_B B 20 ? B 27 ? 19 1 1 A A 10 1_555 A U 15 1_555 0.119 -0.239 0.191 0.148 -12.918 -2.643 9 B_A21:U26_B B 21 ? B 26 ? 20 1 1 A G 11 1_555 A C 14 1_555 -0.321 -0.222 0.178 8.528 8.193 -3.329 10 B_G22:C25_B B 22 ? B 25 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 23 1_555 A G 2 1_555 A C 22 1_555 -0.470 -2.157 2.899 -3.106 7.682 29.110 -5.397 0.391 2.304 14.906 6.028 30.242 1 BB_G12G13:C33C34_BB B 12 ? B 34 ? B 13 ? B 33 ? 1 A G 2 1_555 A C 22 1_555 A C 3 1_555 A G 21 1_555 0.063 -1.280 3.146 1.272 8.491 35.805 -3.090 0.059 2.782 13.571 -2.033 36.787 2 BB_G13C14:G32C33_BB B 13 ? B 33 ? B 14 ? B 32 ? 1 A C 3 1_555 A G 21 1_555 A G 4 1_555 A C 20 1_555 0.370 -2.080 3.230 1.412 11.905 25.475 -6.670 -0.479 2.084 25.289 -3.000 28.112 3 BB_C14G15:C31G32_BB B 14 ? B 32 ? B 15 ? B 31 ? 1 A G 4 1_555 A C 20 1_555 A G 5 1_555 A C 19 1_555 -0.654 -1.816 2.907 -0.235 12.421 33.867 -4.344 1.032 2.135 20.486 0.388 36.011 4 BB_G15G16:C30C31_BB B 15 ? B 31 ? B 16 ? B 30 ? 1 A G 5 1_555 A C 19 1_555 A U 7 1_555 A A 18 1_555 -1.111 -1.408 3.203 -1.134 4.008 40.916 -2.423 1.464 3.086 5.715 1.617 41.119 5 BB_G16U18:A29C30_BB B 16 ? B 30 ? B 18 ? B 29 ? 1 A U 7 1_555 A A 18 1_555 A G 8 1_555 A C 17 1_555 -0.611 -2.043 2.958 0.041 9.958 30.683 -5.117 1.106 2.203 18.226 -0.075 32.221 6 BB_U18G19:C28A29_BB B 18 ? B 29 ? B 19 ? B 28 ? 1 A G 8 1_555 A C 17 1_555 A C 9 1_555 A G 16 1_555 -0.310 -1.240 3.294 -0.284 6.732 35.040 -2.975 0.466 3.014 11.054 0.466 35.662 7 BB_G19C20:G27C28_BB B 19 ? B 28 ? B 20 ? B 27 ? 1 A C 9 1_555 A G 16 1_555 A A 10 1_555 A U 15 1_555 0.316 -1.445 3.060 2.225 9.242 33.525 -3.657 -0.229 2.597 15.636 -3.764 34.809 8 BB_C20A21:U26G27_BB B 20 ? B 27 ? B 21 ? B 26 ? 1 A A 10 1_555 A U 15 1_555 A G 11 1_555 A C 14 1_555 0.249 -0.614 3.112 1.158 2.820 28.556 -1.836 -0.257 3.046 5.697 -2.339 28.715 9 BB_A21G22:C25U26_BB B 21 ? B 26 ? B 22 ? B 25 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 'CHLORIDE ION' CL 5 'CALCIUM ION' CA 6 'SODIUM ION' NA 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1WSU _pdbx_initial_refinement_model.details 'PDB ENTRY 1WSU' #