data_2PJW # _entry.id 2PJW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2PJW RCSB RCSB042458 WWPDB D_1000042458 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1YD8 _pdbx_database_related.details 'Human GGA3 GAT DOMAIN' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PJW _pdbx_database_status.recvd_initial_deposition_date 2007-04-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Prag, G.' 1 'Hurley, J.H.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The Vps27/Hse1 Complex Is a GAT Domain-Based Scaffold for Ubiquitin-Dependent Sorting.' Dev.Cell 12 973 986 2007 ? US 1534-5807 ? ? 17543868 10.1016/j.devcel.2007.04.013 1 ;Structural mechanism for ubiquitinated-cargo recognition by the Golgi-localized, {gamma}-ear-containing, ADP-ribosylation-factor-binding proteins ; Proc.Natl.Acad.Sci.USA 102 2334 2339 2005 PNASA6 US 0027-8424 0040 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Prag, G.' 1 primary 'Watson, H.' 2 primary 'Kim, Y.C.' 3 primary 'Beach, B.M.' 4 primary 'Ghirlando, R.' 5 primary 'Hummer, G.' 6 primary 'Bonifacino, J.S.' 7 primary 'Hurley, J.H.' 8 1 'Prag, G.' 9 1 'Lee, S.' 10 1 'Mattera, R.' 11 1 'Arighi, C.N.' 12 1 'Beach, B.M.' 13 1 'Bonifacino, J.S.' 14 1 'Hurley, J.H.' 15 # _cell.entry_id 2PJW _cell.length_a 62.400 _cell.length_b 62.400 _cell.length_c 94.560 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PJW _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein YHL002W' 10049.697 1 ? ? ? ? 2 polymer man 'Vacuolar protein sorting-associated protein 27' 10770.648 1 ? ? ? ? 3 water nat water 18.015 29 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;KEAIVFSQKTTIDQLHNSLNAASKTGNSNEVLQDPHIGD(MSE)YGSVTPLRPQVTR(MSE)LGKYAKEKED(MSE)LSL RQVLANAERSYNQL(MSE)DRAAN ; ;KEAIVFSQKTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLANAERSYN QLMDRAAN ; H ? 2 'polypeptide(L)' no yes ;VDLSDEEKDSIY(MSE)FASLVEK(MSE)KSRPLNEILEDSKLQNLAQRVFASKARLNYALNDKAQKYNTLIE(MSE)NG KISEI(MSE)NIYDRLLEQQLQSINLS ; ;VDLSDEEKDSIYMFASLVEKMKSRPLNEILEDSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIMNIYDRL LEQQLQSINLS ; V ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 GLU n 1 3 ALA n 1 4 ILE n 1 5 VAL n 1 6 PHE n 1 7 SER n 1 8 GLN n 1 9 LYS n 1 10 THR n 1 11 THR n 1 12 ILE n 1 13 ASP n 1 14 GLN n 1 15 LEU n 1 16 HIS n 1 17 ASN n 1 18 SER n 1 19 LEU n 1 20 ASN n 1 21 ALA n 1 22 ALA n 1 23 SER n 1 24 LYS n 1 25 THR n 1 26 GLY n 1 27 ASN n 1 28 SER n 1 29 ASN n 1 30 GLU n 1 31 VAL n 1 32 LEU n 1 33 GLN n 1 34 ASP n 1 35 PRO n 1 36 HIS n 1 37 ILE n 1 38 GLY n 1 39 ASP n 1 40 MSE n 1 41 TYR n 1 42 GLY n 1 43 SER n 1 44 VAL n 1 45 THR n 1 46 PRO n 1 47 LEU n 1 48 ARG n 1 49 PRO n 1 50 GLN n 1 51 VAL n 1 52 THR n 1 53 ARG n 1 54 MSE n 1 55 LEU n 1 56 GLY n 1 57 LYS n 1 58 TYR n 1 59 ALA n 1 60 LYS n 1 61 GLU n 1 62 LYS n 1 63 GLU n 1 64 ASP n 1 65 MSE n 1 66 LEU n 1 67 SER n 1 68 LEU n 1 69 ARG n 1 70 GLN n 1 71 VAL n 1 72 LEU n 1 73 ALA n 1 74 ASN n 1 75 ALA n 1 76 GLU n 1 77 ARG n 1 78 SER n 1 79 TYR n 1 80 ASN n 1 81 GLN n 1 82 LEU n 1 83 MSE n 1 84 ASP n 1 85 ARG n 1 86 ALA n 1 87 ALA n 1 88 ASN n 2 1 VAL n 2 2 ASP n 2 3 LEU n 2 4 SER n 2 5 ASP n 2 6 GLU n 2 7 GLU n 2 8 LYS n 2 9 ASP n 2 10 SER n 2 11 ILE n 2 12 TYR n 2 13 MSE n 2 14 PHE n 2 15 ALA n 2 16 SER n 2 17 LEU n 2 18 VAL n 2 19 GLU n 2 20 LYS n 2 21 MSE n 2 22 LYS n 2 23 SER n 2 24 ARG n 2 25 PRO n 2 26 LEU n 2 27 ASN n 2 28 GLU n 2 29 ILE n 2 30 LEU n 2 31 GLU n 2 32 ASP n 2 33 SER n 2 34 LYS n 2 35 LEU n 2 36 GLN n 2 37 ASN n 2 38 LEU n 2 39 ALA n 2 40 GLN n 2 41 ARG n 2 42 VAL n 2 43 PHE n 2 44 ALA n 2 45 SER n 2 46 LYS n 2 47 ALA n 2 48 ARG n 2 49 LEU n 2 50 ASN n 2 51 TYR n 2 52 ALA n 2 53 LEU n 2 54 ASN n 2 55 ASP n 2 56 LYS n 2 57 ALA n 2 58 GLN n 2 59 LYS n 2 60 TYR n 2 61 ASN n 2 62 THR n 2 63 LEU n 2 64 ILE n 2 65 GLU n 2 66 MSE n 2 67 ASN n 2 68 GLY n 2 69 LYS n 2 70 ILE n 2 71 SER n 2 72 GLU n 2 73 ILE n 2 74 MSE n 2 75 ASN n 2 76 ILE n 2 77 TYR n 2 78 ASP n 2 79 ARG n 2 80 LEU n 2 81 LEU n 2 82 GLU n 2 83 GLN n 2 84 GLN n 2 85 LEU n 2 86 GLN n 2 87 SER n 2 88 ILE n 2 89 ASN n 2 90 LEU n 2 91 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ;baker's yeast ; Saccharomyces hse1 ? ? ? ? ? ? 'Saccharomyces cerevisiae' 4932 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? B834 ? ? ? ? ? ? ? PLASMID ? ? ? pST39 ? ? 2 1 sample ? ? ? ;baker's yeast ; Saccharomyces 'VPS27, GRD11' ? ? ? ? ? ? 'Saccharomyces cerevisiae' 4932 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? B834 ? ? ? ? ? ? ? PLASMID ? ? ? pST39 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP YHA2_YEAST P38753 1 ;KEAIVFSQKTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLANAERSYN QLMDRAAN ; 288 ? 2 UNP VPS27_YEAST P40343 2 ;VDLSDEEKDSIYMFASLVEKMKSRPLNEILEDSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIMNIYDRL LEQQLQSINLS ; 348 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2PJW H 1 ? 88 ? P38753 288 ? 375 ? 288 375 2 2 2PJW V 1 ? 91 ? P40343 348 ? 438 ? 348 438 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2PJW MSE H 40 ? UNP P38753 MET 327 'MODIFIED RESIDUE' 327 1 1 2PJW MSE H 54 ? UNP P38753 MET 341 'MODIFIED RESIDUE' 341 2 1 2PJW MSE H 65 ? UNP P38753 MET 352 'MODIFIED RESIDUE' 352 3 1 2PJW MSE H 83 ? UNP P38753 MET 370 'MODIFIED RESIDUE' 370 4 2 2PJW MSE V 13 ? UNP P40343 MET 360 'MODIFIED RESIDUE' 360 5 2 2PJW MSE V 21 ? UNP P40343 MET 368 'MODIFIED RESIDUE' 368 6 2 2PJW MSE V 66 ? UNP P40343 MET 413 'MODIFIED RESIDUE' 413 7 2 2PJW MSE V 74 ? UNP P40343 MET 421 'MODIFIED RESIDUE' 421 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2PJW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_percent_sol 46.91 _exptl_crystal.description 'The structure factor file contains Friedel pairs.' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 288 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.85 _exptl_crystal_grow.pdbx_details ;1.1-1.4 M ammonium sulfate, 0.1 M Tris-HCl. Then micro-seeding into 1.25 M ammonium sulfate, 0.1 M Tris-HCl, pH 8.85, VAPOR DIFFUSION, SITTING DROP, temperature 288K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2006-07-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979493 1.0 2 0.972425 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.979493, 0.972425' # _reflns.entry_id 2PJW _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 46.92 _reflns.d_resolution_high 3.01 _reflns.number_obs 7506 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.052 _reflns.pdbx_netI_over_sigmaI 18.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.01 _reflns_shell.d_res_low 3.14 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2PJW _refine.ls_number_reflns_obs 7506 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 276902.72 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.92 _refine.ls_d_res_high 3.01 _refine.ls_percent_reflns_obs 91.9 _refine.ls_R_factor_obs 0.222 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.222 _refine.ls_R_factor_R_free 0.285 _refine.ls_R_factor_R_free_error 0.015 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 381 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 70.7 _refine.aniso_B[1][1] 14.90 _refine.aniso_B[2][2] 14.90 _refine.aniso_B[3][3] -29.79 _refine.aniso_B[1][2] 13.81 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.370494 _refine.solvent_model_param_bsol 69.289 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED. The Friedel pairs were used for phasing.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'TWO WAVELENGTH MAD' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2PJW _refine_analyze.Luzzati_coordinate_error_obs 0.39 _refine_analyze.Luzzati_sigma_a_obs 0.65 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.59 _refine_analyze.Luzzati_sigma_a_free 0.69 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1429 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 29 _refine_hist.number_atoms_total 1458 _refine_hist.d_res_high 3.01 _refine_hist.d_res_low 46.92 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 16.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.79 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.00 _refine_ls_shell.d_res_low 3.19 _refine_ls_shell.number_reflns_R_work 831 _refine_ls_shell.R_factor_R_work 0.4 _refine_ls_shell.percent_reflns_obs 64.2 _refine_ls_shell.R_factor_R_free 0.387 _refine_ls_shell.R_factor_R_free_error 0.062 _refine_ls_shell.percent_reflns_R_free 4.5 _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2PJW _struct.title 'The Vps27/Hse1 complex is a GAT domain-based scaffold for ubiquitin-dependent sorting' _struct.pdbx_descriptor 'Uncharacterized protein YHL002W, Vacuolar protein sorting-associated protein 27' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PJW _struct_keywords.pdbx_keywords ENDOCYTOSIS/EXOCYTOSIS _struct_keywords.text 'GAT domain, Core complex, Doamin Swap, ENDOCYTOSIS-EXOCYTOSIS COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 2 ? SER A 23 ? GLU H 289 SER H 310 1 ? 22 HELX_P HELX_P2 2 ASN A 29 ? LEU A 32 ? ASN H 316 LEU H 319 1 ? 4 HELX_P HELX_P3 3 PRO A 35 ? ASP A 84 ? PRO H 322 ASP H 371 1 ? 50 HELX_P HELX_P4 4 ASP B 5 ? GLU B 19 ? ASP V 352 GLU V 366 1 ? 15 HELX_P HELX_P5 5 ASN B 27 ? GLU B 31 ? ASN V 374 GLU V 378 1 ? 5 HELX_P HELX_P6 6 LYS B 34 ? ASN B 89 ? LYS V 381 ASN V 436 1 ? 56 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ASP 39 C ? ? ? 1_555 A MSE 40 N ? ? H ASP 326 H MSE 327 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 40 C ? ? ? 1_555 A TYR 41 N ? ? H MSE 327 H TYR 328 1_555 ? ? ? ? ? ? ? 1.325 ? covale3 covale ? ? A ARG 53 C ? ? ? 1_555 A MSE 54 N ? ? H ARG 340 H MSE 341 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? A MSE 54 C ? ? ? 1_555 A LEU 55 N ? ? H MSE 341 H LEU 342 1_555 ? ? ? ? ? ? ? 1.328 ? covale5 covale ? ? A ASP 64 C ? ? ? 1_555 A MSE 65 N ? ? H ASP 351 H MSE 352 1_555 ? ? ? ? ? ? ? 1.324 ? covale6 covale ? ? A MSE 65 C ? ? ? 1_555 A LEU 66 N ? ? H MSE 352 H LEU 353 1_555 ? ? ? ? ? ? ? 1.332 ? covale7 covale ? ? A LEU 82 C ? ? ? 1_555 A MSE 83 N ? ? H LEU 369 H MSE 370 1_555 ? ? ? ? ? ? ? 1.328 ? covale8 covale ? ? A MSE 83 C ? ? ? 1_555 A ASP 84 N ? ? H MSE 370 H ASP 371 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale ? ? B TYR 12 C ? ? ? 1_555 B MSE 13 N ? ? V TYR 359 V MSE 360 1_555 ? ? ? ? ? ? ? 1.327 ? covale10 covale ? ? B MSE 13 C ? ? ? 1_555 B PHE 14 N ? ? V MSE 360 V PHE 361 1_555 ? ? ? ? ? ? ? 1.333 ? covale11 covale ? ? B LYS 20 C ? ? ? 1_555 B MSE 21 N ? ? V LYS 367 V MSE 368 1_555 ? ? ? ? ? ? ? 1.330 ? covale12 covale ? ? B MSE 21 C ? ? ? 1_555 B LYS 22 N ? ? V MSE 368 V LYS 369 1_555 ? ? ? ? ? ? ? 1.325 ? covale13 covale ? ? B GLU 65 C ? ? ? 1_555 B MSE 66 N ? ? V GLU 412 V MSE 413 1_555 ? ? ? ? ? ? ? 1.326 ? covale14 covale ? ? B MSE 66 C ? ? ? 1_555 B ASN 67 N ? ? V MSE 413 V ASN 414 1_555 ? ? ? ? ? ? ? 1.320 ? covale15 covale ? ? B ILE 73 C ? ? ? 1_555 B MSE 74 N ? ? V ILE 420 V MSE 421 1_555 ? ? ? ? ? ? ? 1.324 ? covale16 covale ? ? B MSE 74 C ? ? ? 1_555 B ASN 75 N ? ? V MSE 421 V ASN 422 1_555 ? ? ? ? ? ? ? 1.323 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2PJW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2PJW _atom_sites.fract_transf_matrix[1][1] 0.016026 _atom_sites.fract_transf_matrix[1][2] 0.009252 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018505 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010575 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 288 288 LYS LYS H . n A 1 2 GLU 2 289 289 GLU GLU H . n A 1 3 ALA 3 290 290 ALA ALA H . n A 1 4 ILE 4 291 291 ILE ILE H . n A 1 5 VAL 5 292 292 VAL VAL H . n A 1 6 PHE 6 293 293 PHE PHE H . n A 1 7 SER 7 294 294 SER SER H . n A 1 8 GLN 8 295 295 GLN GLN H . n A 1 9 LYS 9 296 296 LYS LYS H . n A 1 10 THR 10 297 297 THR THR H . n A 1 11 THR 11 298 298 THR THR H . n A 1 12 ILE 12 299 299 ILE ILE H . n A 1 13 ASP 13 300 300 ASP ASP H . n A 1 14 GLN 14 301 301 GLN GLN H . n A 1 15 LEU 15 302 302 LEU LEU H . n A 1 16 HIS 16 303 303 HIS HIS H . n A 1 17 ASN 17 304 304 ASN ASN H . n A 1 18 SER 18 305 305 SER SER H . n A 1 19 LEU 19 306 306 LEU LEU H . n A 1 20 ASN 20 307 307 ASN ASN H . n A 1 21 ALA 21 308 308 ALA ALA H . n A 1 22 ALA 22 309 309 ALA ALA H . n A 1 23 SER 23 310 310 SER SER H . n A 1 24 LYS 24 311 311 LYS LYS H . n A 1 25 THR 25 312 312 THR THR H . n A 1 26 GLY 26 313 313 GLY GLY H . n A 1 27 ASN 27 314 314 ASN ASN H . n A 1 28 SER 28 315 315 SER SER H . n A 1 29 ASN 29 316 316 ASN ASN H . n A 1 30 GLU 30 317 317 GLU GLU H . n A 1 31 VAL 31 318 318 VAL VAL H . n A 1 32 LEU 32 319 319 LEU LEU H . n A 1 33 GLN 33 320 320 GLN GLN H . n A 1 34 ASP 34 321 321 ASP ASP H . n A 1 35 PRO 35 322 322 PRO PRO H . n A 1 36 HIS 36 323 323 HIS HIS H . n A 1 37 ILE 37 324 324 ILE ILE H . n A 1 38 GLY 38 325 325 GLY GLY H . n A 1 39 ASP 39 326 326 ASP ASP H . n A 1 40 MSE 40 327 327 MSE MSE H . n A 1 41 TYR 41 328 328 TYR TYR H . n A 1 42 GLY 42 329 329 GLY GLY H . n A 1 43 SER 43 330 330 SER SER H . n A 1 44 VAL 44 331 331 VAL VAL H . n A 1 45 THR 45 332 332 THR THR H . n A 1 46 PRO 46 333 333 PRO PRO H . n A 1 47 LEU 47 334 334 LEU LEU H . n A 1 48 ARG 48 335 335 ARG ARG H . n A 1 49 PRO 49 336 336 PRO PRO H . n A 1 50 GLN 50 337 337 GLN GLN H . n A 1 51 VAL 51 338 338 VAL VAL H . n A 1 52 THR 52 339 339 THR THR H . n A 1 53 ARG 53 340 340 ARG ARG H . n A 1 54 MSE 54 341 341 MSE MSE H . n A 1 55 LEU 55 342 342 LEU LEU H . n A 1 56 GLY 56 343 343 GLY GLY H . n A 1 57 LYS 57 344 344 LYS LYS H . n A 1 58 TYR 58 345 345 TYR TYR H . n A 1 59 ALA 59 346 346 ALA ALA H . n A 1 60 LYS 60 347 347 LYS LYS H . n A 1 61 GLU 61 348 348 GLU GLU H . n A 1 62 LYS 62 349 349 LYS LYS H . n A 1 63 GLU 63 350 350 GLU GLU H . n A 1 64 ASP 64 351 351 ASP ASP H . n A 1 65 MSE 65 352 352 MSE MSE H . n A 1 66 LEU 66 353 353 LEU LEU H . n A 1 67 SER 67 354 354 SER SER H . n A 1 68 LEU 68 355 355 LEU LEU H . n A 1 69 ARG 69 356 356 ARG ARG H . n A 1 70 GLN 70 357 357 GLN GLN H . n A 1 71 VAL 71 358 358 VAL VAL H . n A 1 72 LEU 72 359 359 LEU LEU H . n A 1 73 ALA 73 360 360 ALA ALA H . n A 1 74 ASN 74 361 361 ASN ASN H . n A 1 75 ALA 75 362 362 ALA ALA H . n A 1 76 GLU 76 363 363 GLU GLU H . n A 1 77 ARG 77 364 364 ARG ARG H . n A 1 78 SER 78 365 365 SER SER H . n A 1 79 TYR 79 366 366 TYR TYR H . n A 1 80 ASN 80 367 367 ASN ASN H . n A 1 81 GLN 81 368 368 GLN GLN H . n A 1 82 LEU 82 369 369 LEU LEU H . n A 1 83 MSE 83 370 370 MSE MSE H . n A 1 84 ASP 84 371 371 ASP ASP H . n A 1 85 ARG 85 372 372 ARG ARG H . n A 1 86 ALA 86 373 373 ALA ALA H . n A 1 87 ALA 87 374 374 ALA ALA H . n A 1 88 ASN 88 375 375 ASN ASN H . n B 2 1 VAL 1 348 348 VAL VAL V . n B 2 2 ASP 2 349 349 ASP ASP V . n B 2 3 LEU 3 350 350 LEU LEU V . n B 2 4 SER 4 351 351 SER SER V . n B 2 5 ASP 5 352 352 ASP ASP V . n B 2 6 GLU 6 353 353 GLU GLU V . n B 2 7 GLU 7 354 354 GLU GLU V . n B 2 8 LYS 8 355 355 LYS LYS V . n B 2 9 ASP 9 356 356 ASP ASP V . n B 2 10 SER 10 357 357 SER SER V . n B 2 11 ILE 11 358 358 ILE ILE V . n B 2 12 TYR 12 359 359 TYR TYR V . n B 2 13 MSE 13 360 360 MSE MSE V . n B 2 14 PHE 14 361 361 PHE PHE V . n B 2 15 ALA 15 362 362 ALA ALA V . n B 2 16 SER 16 363 363 SER SER V . n B 2 17 LEU 17 364 364 LEU LEU V . n B 2 18 VAL 18 365 365 VAL VAL V . n B 2 19 GLU 19 366 366 GLU GLU V . n B 2 20 LYS 20 367 367 LYS LYS V . n B 2 21 MSE 21 368 368 MSE MSE V . n B 2 22 LYS 22 369 369 LYS LYS V . n B 2 23 SER 23 370 370 SER SER V . n B 2 24 ARG 24 371 371 ARG ARG V . n B 2 25 PRO 25 372 372 PRO PRO V . n B 2 26 LEU 26 373 373 LEU LEU V . n B 2 27 ASN 27 374 374 ASN ASN V . n B 2 28 GLU 28 375 375 GLU GLU V . n B 2 29 ILE 29 376 376 ILE ILE V . n B 2 30 LEU 30 377 377 LEU LEU V . n B 2 31 GLU 31 378 378 GLU GLU V . n B 2 32 ASP 32 379 379 ASP ASP V . n B 2 33 SER 33 380 380 SER SER V . n B 2 34 LYS 34 381 381 LYS LYS V . n B 2 35 LEU 35 382 382 LEU LEU V . n B 2 36 GLN 36 383 383 GLN GLN V . n B 2 37 ASN 37 384 384 ASN ASN V . n B 2 38 LEU 38 385 385 LEU LEU V . n B 2 39 ALA 39 386 386 ALA ALA V . n B 2 40 GLN 40 387 387 GLN GLN V . n B 2 41 ARG 41 388 388 ARG ARG V . n B 2 42 VAL 42 389 389 VAL VAL V . n B 2 43 PHE 43 390 390 PHE PHE V . n B 2 44 ALA 44 391 391 ALA ALA V . n B 2 45 SER 45 392 392 SER SER V . n B 2 46 LYS 46 393 393 LYS LYS V . n B 2 47 ALA 47 394 394 ALA ALA V . n B 2 48 ARG 48 395 395 ARG ARG V . n B 2 49 LEU 49 396 396 LEU LEU V . n B 2 50 ASN 50 397 397 ASN ASN V . n B 2 51 TYR 51 398 398 TYR TYR V . n B 2 52 ALA 52 399 399 ALA ALA V . n B 2 53 LEU 53 400 400 LEU LEU V . n B 2 54 ASN 54 401 401 ASN ASN V . n B 2 55 ASP 55 402 402 ASP ASP V . n B 2 56 LYS 56 403 403 LYS LYS V . n B 2 57 ALA 57 404 404 ALA ALA V . n B 2 58 GLN 58 405 405 GLN GLN V . n B 2 59 LYS 59 406 406 LYS LYS V . n B 2 60 TYR 60 407 407 TYR TYR V . n B 2 61 ASN 61 408 408 ASN ASN V . n B 2 62 THR 62 409 409 THR THR V . n B 2 63 LEU 63 410 410 LEU LEU V . n B 2 64 ILE 64 411 411 ILE ILE V . n B 2 65 GLU 65 412 412 GLU GLU V . n B 2 66 MSE 66 413 413 MSE MSE V . n B 2 67 ASN 67 414 414 ASN ASN V . n B 2 68 GLY 68 415 415 GLY GLY V . n B 2 69 LYS 69 416 416 LYS LYS V . n B 2 70 ILE 70 417 417 ILE ILE V . n B 2 71 SER 71 418 418 SER SER V . n B 2 72 GLU 72 419 419 GLU GLU V . n B 2 73 ILE 73 420 420 ILE ILE V . n B 2 74 MSE 74 421 421 MSE MSE V . n B 2 75 ASN 75 422 422 ASN ASN V . n B 2 76 ILE 76 423 423 ILE ILE V . n B 2 77 TYR 77 424 424 TYR TYR V . n B 2 78 ASP 78 425 425 ASP ASP V . n B 2 79 ARG 79 426 426 ARG ARG V . n B 2 80 LEU 80 427 427 LEU LEU V . n B 2 81 LEU 81 428 428 LEU LEU V . n B 2 82 GLU 82 429 429 GLU GLU V . n B 2 83 GLN 83 430 430 GLN GLN V . n B 2 84 GLN 84 431 431 GLN GLN V . n B 2 85 LEU 85 432 432 LEU LEU V . n B 2 86 GLN 86 433 433 GLN GLN V . n B 2 87 SER 87 434 434 SER SER V . n B 2 88 ILE 88 435 435 ILE ILE V . n B 2 89 ASN 89 436 436 ASN ASN V . n B 2 90 LEU 90 437 437 LEU LEU V . n B 2 91 SER 91 438 438 SER SER V . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 4 4 HOH HOH H . C 3 HOH 2 5 5 HOH HOH H . C 3 HOH 3 7 7 HOH HOH H . C 3 HOH 4 9 9 HOH HOH H . C 3 HOH 5 12 12 HOH HOH H . C 3 HOH 6 13 13 HOH HOH H . C 3 HOH 7 14 14 HOH HOH H . C 3 HOH 8 15 15 HOH HOH H . C 3 HOH 9 18 18 HOH HOH H . C 3 HOH 10 21 21 HOH HOH H . C 3 HOH 11 22 22 HOH HOH H . C 3 HOH 12 24 24 HOH HOH H . C 3 HOH 13 25 25 HOH HOH H . C 3 HOH 14 29 29 HOH HOH H . D 3 HOH 1 1 1 HOH HOH V . D 3 HOH 2 2 2 HOH HOH V . D 3 HOH 3 3 3 HOH HOH V . D 3 HOH 4 6 6 HOH HOH V . D 3 HOH 5 8 8 HOH HOH V . D 3 HOH 6 10 10 HOH HOH V . D 3 HOH 7 11 11 HOH HOH V . D 3 HOH 8 16 16 HOH HOH V . D 3 HOH 9 17 17 HOH HOH V . D 3 HOH 10 19 19 HOH HOH V . D 3 HOH 11 20 20 HOH HOH V . D 3 HOH 12 23 23 HOH HOH V . D 3 HOH 13 26 26 HOH HOH V . D 3 HOH 14 27 27 HOH HOH V . D 3 HOH 15 28 28 HOH HOH V . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 40 H MSE 327 ? MET SELENOMETHIONINE 2 A MSE 54 H MSE 341 ? MET SELENOMETHIONINE 3 A MSE 65 H MSE 352 ? MET SELENOMETHIONINE 4 A MSE 83 H MSE 370 ? MET SELENOMETHIONINE 5 B MSE 13 V MSE 360 ? MET SELENOMETHIONINE 6 B MSE 21 V MSE 368 ? MET SELENOMETHIONINE 7 B MSE 66 V MSE 413 ? MET SELENOMETHIONINE 8 B MSE 74 V MSE 421 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4220 ? 1 MORE -39 ? 1 'SSA (A^2)' 10730 ? 2 'ABSA (A^2)' 10700 ? 2 MORE -98 ? 2 'SSA (A^2)' 19180 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 31.5200000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-06-05 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 DENZO 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SnB phasing . ? 5 # _pdbx_database_remark.id 650 _pdbx_database_remark.text ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CG2 _pdbx_validate_symm_contact.auth_asym_id_1 H _pdbx_validate_symm_contact.auth_comp_id_1 THR _pdbx_validate_symm_contact.auth_seq_id_1 332 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 CG2 _pdbx_validate_symm_contact.auth_asym_id_2 H _pdbx_validate_symm_contact.auth_comp_id_2 THR _pdbx_validate_symm_contact.auth_seq_id_2 332 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_555 _pdbx_validate_symm_contact.dist 2.14 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN H 295 ? ? -58.31 3.09 2 1 SER H 310 ? ? -48.81 -8.43 3 1 THR H 312 ? ? -148.49 -25.90 4 1 SER H 315 ? ? 25.91 -90.34 5 1 GLU H 317 ? ? -38.00 -71.35 6 1 GLN H 320 ? ? -88.00 -139.76 7 1 ASP H 321 ? ? 62.05 111.42 8 1 LYS H 344 ? ? -51.39 -72.88 9 1 ARG H 372 ? ? -61.18 6.68 10 1 LYS V 369 ? ? -38.80 -39.27 11 1 PRO V 372 ? ? -38.22 14.38 12 1 GLU V 378 ? ? -69.08 42.34 13 1 SER V 380 ? ? 171.73 -80.68 14 1 LYS V 381 ? ? -35.48 -39.60 15 1 MSE V 421 ? ? -67.07 24.75 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #