HEADER OXIDOREDUCTASE 17-APR-07 2PK3 TITLE CRYSTAL STRUCTURE OF A GDP-4-KETO-6-DEOXY-D-MANNOSE REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDP-6-DEOXY-D-LYXO-4-HEXULOSE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANEURINIBACILLUS THERMOAEROPHILUS; SOURCE 3 ORGANISM_TAXID: 143495; SOURCE 4 STRAIN: L420-91T; SOURCE 5 GENE: RMD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE80 KEYWDS SDR, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, ROSSMANN FOLD, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.A.WEBB,R.M.GARAVITO REVDAT 5 30-AUG-23 2PK3 1 REMARK SEQADV REVDAT 4 13-JUL-11 2PK3 1 VERSN REVDAT 3 23-MAR-10 2PK3 1 JRNL REVDAT 2 24-FEB-09 2PK3 1 VERSN REVDAT 1 25-MAR-08 2PK3 0 JRNL AUTH J.D.KING,K.K.POON,N.A.WEBB,E.M.ANDERSON,D.J.MCNALLY, JRNL AUTH 2 J.R.BRISSON,P.MESSNER,R.M.GARAVITO,J.S.LAM JRNL TITL THE STRUCTURAL BASIS FOR CATALYTIC FUNCTION OF GMD AND RMD, JRNL TITL 2 TWO CLOSELY RELATED ENZYMES FROM THE GDP-D-RHAMNOSE JRNL TITL 3 BIOSYNTHESIS PATHWAY. JRNL REF FEBS J. V. 276 2686 2009 JRNL REFN ISSN 1742-464X JRNL PMID 19459932 JRNL DOI 10.1111/J.1742-4658.2009.06993.X REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 60922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3207 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4472 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 235 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4810 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 158 REMARK 3 SOLVENT ATOMS : 350 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : 0.72000 REMARK 3 B23 (A**2) : -0.30000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.346 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5220 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7120 ; 1.476 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 643 ; 5.808 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;39.509 ;24.554 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 899 ;13.678 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;19.139 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 816 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3852 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2516 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3590 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 363 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.208 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.207 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3264 ; 0.877 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5137 ; 1.350 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2252 ; 2.310 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1983 ; 3.547 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1120 18.7860 29.0590 REMARK 3 T TENSOR REMARK 3 T11: .0495 T22: -.1004 REMARK 3 T33: -.0164 T12: .0545 REMARK 3 T13: .0513 T23: .0385 REMARK 3 L TENSOR REMARK 3 L11: .7888 L22: 1.2987 REMARK 3 L33: 1.4064 L12: .0966 REMARK 3 L13: -.2094 L23: .0518 REMARK 3 S TENSOR REMARK 3 S11: -.0474 S12: -.2079 S13: -.1023 REMARK 3 S21: .3238 S22: -.0262 S23: -.0752 REMARK 3 S31: .3469 S32: .2030 S33: .0736 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 308 REMARK 3 ORIGIN FOR THE GROUP (A): 47.4650 1.0560 -.6780 REMARK 3 T TENSOR REMARK 3 T11: -.1142 T22: -.1413 REMARK 3 T33: .0358 T12: .0391 REMARK 3 T13: .0538 T23: -.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.3167 L22: 1.3148 REMARK 3 L33: .6118 L12: .1118 REMARK 3 L13: -.2838 L23: -.0491 REMARK 3 S TENSOR REMARK 3 S11: -.0272 S12: .1085 S13: -.2469 REMARK 3 S21: -.1058 S22: -.0046 S23: -.2737 REMARK 3 S31: .1161 S32: .1170 S33: .0318 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PK3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000042465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64129 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 29.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: 1RPN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PENTAERYTHRITOL PROPOXYLATE (5/4 REMARK 280 PO/OH), 100 MM TRIS, 200 MM NACL, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMODIMER, THE CONTECTS OF THE REMARK 300 ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET B -11 REMARK 465 ARG B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 33 CG OD1 ND2 REMARK 470 ASN A 34 CG OD1 ND2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 LYS B 258 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 417 O HOH A 559 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 53 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 53 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 VAL B 128 CB - CA - C ANGL. DEV. = -11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 81 64.92 -114.32 REMARK 500 ASN A 81 65.39 -115.20 REMARK 500 ALA B 36 -134.14 -80.21 REMARK 500 LYS B 37 127.28 129.70 REMARK 500 ASN B 81 60.85 -117.41 REMARK 500 ASN B 81 66.06 -114.66 REMARK 500 PRO B 198 49.63 -70.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A2R A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A2R B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDD A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDD B 411 DBREF 2PK3 A 1 309 UNP Q6T1X6 Q6T1X6_ANETH 1 309 DBREF 2PK3 B 1 309 UNP Q6T1X6 Q6T1X6_ANETH 1 309 SEQADV 2PK3 MET A -11 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 ARG A -10 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 GLY A -9 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 SER A -8 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 HIS A -7 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 HIS A -6 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 HIS A -5 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 HIS A -4 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 HIS A -3 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 HIS A -2 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 GLY A -1 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 SER A 0 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 MET B -11 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 ARG B -10 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 GLY B -9 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 SER B -8 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 HIS B -7 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 HIS B -6 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 HIS B -5 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 HIS B -4 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 HIS B -3 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 HIS B -2 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 GLY B -1 UNP Q6T1X6 EXPRESSION TAG SEQADV 2PK3 SER B 0 UNP Q6T1X6 EXPRESSION TAG SEQRES 1 A 321 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 321 ARG ALA LEU ILE THR GLY VAL ALA GLY PHE VAL GLY LYS SEQRES 3 A 321 TYR LEU ALA ASN HIS LEU THR GLU GLN ASN VAL GLU VAL SEQRES 4 A 321 PHE GLY THR SER ARG ASN ASN GLU ALA LYS LEU PRO ASN SEQRES 5 A 321 VAL GLU MET ILE SER LEU ASP ILE MET ASP SER GLN ARG SEQRES 6 A 321 VAL LYS LYS VAL ILE SER ASP ILE LYS PRO ASP TYR ILE SEQRES 7 A 321 PHE HIS LEU ALA ALA LYS SER SER VAL LYS ASP SER TRP SEQRES 8 A 321 LEU ASN LYS LYS GLY THR PHE SER THR ASN VAL PHE GLY SEQRES 9 A 321 THR LEU HIS VAL LEU ASP ALA VAL ARG ASP SER ASN LEU SEQRES 10 A 321 ASP CYS ARG ILE LEU THR ILE GLY SER SER GLU GLU TYR SEQRES 11 A 321 GLY MET ILE LEU PRO GLU GLU SER PRO VAL SER GLU GLU SEQRES 12 A 321 ASN GLN LEU ARG PRO MET SER PRO TYR GLY VAL SER LYS SEQRES 13 A 321 ALA SER VAL GLY MET LEU ALA ARG GLN TYR VAL LYS ALA SEQRES 14 A 321 TYR GLY MET ASP ILE ILE HIS THR ARG THR PHE ASN HIS SEQRES 15 A 321 ILE GLY PRO GLY GLN SER LEU GLY PHE VAL THR GLN ASP SEQRES 16 A 321 PHE ALA LYS GLN ILE VAL ASP ILE GLU MET GLU LYS GLN SEQRES 17 A 321 GLU PRO ILE ILE LYS VAL GLY ASN LEU GLU ALA VAL ARG SEQRES 18 A 321 ASP PHE THR ASP VAL ARG ASP ILE VAL GLN ALA TYR TRP SEQRES 19 A 321 LEU LEU SER GLN TYR GLY LYS THR GLY ASP VAL TYR ASN SEQRES 20 A 321 VAL CYS SER GLY ILE GLY THR ARG ILE GLN ASP VAL LEU SEQRES 21 A 321 ASP LEU LEU LEU ALA MET ALA ASN VAL LYS ILE ASP THR SEQRES 22 A 321 GLU LEU ASN PRO LEU GLN LEU ARG PRO SER GLU VAL PRO SEQRES 23 A 321 THR LEU ILE GLY SER ASN LYS ARG LEU LYS ASP SER THR SEQRES 24 A 321 GLY TRP LYS PRO ARG ILE PRO LEU GLU LYS SER LEU PHE SEQRES 25 A 321 GLU ILE LEU GLN SER TYR ARG GLN ALA SEQRES 1 B 321 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 B 321 ARG ALA LEU ILE THR GLY VAL ALA GLY PHE VAL GLY LYS SEQRES 3 B 321 TYR LEU ALA ASN HIS LEU THR GLU GLN ASN VAL GLU VAL SEQRES 4 B 321 PHE GLY THR SER ARG ASN ASN GLU ALA LYS LEU PRO ASN SEQRES 5 B 321 VAL GLU MET ILE SER LEU ASP ILE MET ASP SER GLN ARG SEQRES 6 B 321 VAL LYS LYS VAL ILE SER ASP ILE LYS PRO ASP TYR ILE SEQRES 7 B 321 PHE HIS LEU ALA ALA LYS SER SER VAL LYS ASP SER TRP SEQRES 8 B 321 LEU ASN LYS LYS GLY THR PHE SER THR ASN VAL PHE GLY SEQRES 9 B 321 THR LEU HIS VAL LEU ASP ALA VAL ARG ASP SER ASN LEU SEQRES 10 B 321 ASP CYS ARG ILE LEU THR ILE GLY SER SER GLU GLU TYR SEQRES 11 B 321 GLY MET ILE LEU PRO GLU GLU SER PRO VAL SER GLU GLU SEQRES 12 B 321 ASN GLN LEU ARG PRO MET SER PRO TYR GLY VAL SER LYS SEQRES 13 B 321 ALA SER VAL GLY MET LEU ALA ARG GLN TYR VAL LYS ALA SEQRES 14 B 321 TYR GLY MET ASP ILE ILE HIS THR ARG THR PHE ASN HIS SEQRES 15 B 321 ILE GLY PRO GLY GLN SER LEU GLY PHE VAL THR GLN ASP SEQRES 16 B 321 PHE ALA LYS GLN ILE VAL ASP ILE GLU MET GLU LYS GLN SEQRES 17 B 321 GLU PRO ILE ILE LYS VAL GLY ASN LEU GLU ALA VAL ARG SEQRES 18 B 321 ASP PHE THR ASP VAL ARG ASP ILE VAL GLN ALA TYR TRP SEQRES 19 B 321 LEU LEU SER GLN TYR GLY LYS THR GLY ASP VAL TYR ASN SEQRES 20 B 321 VAL CYS SER GLY ILE GLY THR ARG ILE GLN ASP VAL LEU SEQRES 21 B 321 ASP LEU LEU LEU ALA MET ALA ASN VAL LYS ILE ASP THR SEQRES 22 B 321 GLU LEU ASN PRO LEU GLN LEU ARG PRO SER GLU VAL PRO SEQRES 23 B 321 THR LEU ILE GLY SER ASN LYS ARG LEU LYS ASP SER THR SEQRES 24 B 321 GLY TRP LYS PRO ARG ILE PRO LEU GLU LYS SER LEU PHE SEQRES 25 B 321 GLU ILE LEU GLN SER TYR ARG GLN ALA HET A2R A 401 40 HET GDD A 410 39 HET A2R B 402 40 HET GDD B 411 39 HETNAM A2R [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4- HETNAM 2 A2R (PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4R, HETNAM 3 A2R 5R)-3,4,5-TRIHYDROXYTETRAHYDROFURAN-2-YL]METHYL HETNAM 4 A2R DIHYDROGEN DIPHOSPHATE HETNAM GDD GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE FORMUL 3 A2R 2(C15 H24 N5 O17 P3) FORMUL 4 GDD 2(C16 H25 N5 O16 P2) FORMUL 7 HOH *350(H2 O) HELIX 1 1 GLY A 10 GLN A 23 1 14 HELIX 2 2 ASP A 50 LYS A 62 1 13 HELIX 3 3 SER A 74 TRP A 79 1 6 HELIX 4 4 ASN A 81 ASN A 104 1 24 HELIX 5 5 GLU A 116 TYR A 118 5 3 HELIX 6 6 LEU A 122 SER A 126 5 5 HELIX 7 7 SER A 138 GLY A 159 1 22 HELIX 8 8 PHE A 179 MET A 193 1 15 HELIX 9 9 VAL A 214 GLY A 228 1 15 HELIX 10 10 ILE A 244 ALA A 255 1 12 HELIX 11 11 PRO A 265 LEU A 268 5 4 HELIX 12 12 ASN A 280 GLY A 288 1 9 HELIX 13 13 PRO A 294 GLN A 308 1 15 HELIX 14 14 GLY B 10 GLU B 22 1 13 HELIX 15 15 ASP B 50 LYS B 62 1 13 HELIX 16 16 SER B 74 TRP B 79 1 6 HELIX 17 17 ASN B 81 ASN B 104 1 24 HELIX 18 18 GLU B 116 TYR B 118 5 3 HELIX 19 19 LEU B 122 SER B 126 5 5 HELIX 20 20 SER B 138 GLY B 159 1 22 HELIX 21 21 PHE B 179 MET B 193 1 15 HELIX 22 22 VAL B 214 GLY B 228 1 15 HELIX 23 23 ILE B 244 ALA B 255 1 12 HELIX 24 24 PRO B 265 LEU B 268 5 4 HELIX 25 25 ASN B 280 GLY B 288 1 9 HELIX 26 26 PRO B 294 GLN B 308 1 15 SHEET 1 A 7 VAL A 41 SER A 45 0 SHEET 2 A 7 GLU A 26 SER A 31 1 N GLY A 29 O GLU A 42 SHEET 3 A 7 ARG A 2 THR A 6 1 N ALA A 3 O PHE A 28 SHEET 4 A 7 TYR A 65 HIS A 68 1 O TYR A 65 N LEU A 4 SHEET 5 A 7 ARG A 108 SER A 114 1 O LEU A 110 N ILE A 66 SHEET 6 A 7 ASP A 161 THR A 167 1 O ASP A 161 N ILE A 109 SHEET 7 A 7 VAL A 233 VAL A 236 1 O TYR A 234 N ARG A 166 SHEET 1 B 3 ASN A 169 ILE A 171 0 SHEET 2 B 3 VAL A 208 ASP A 213 1 O THR A 212 N ILE A 171 SHEET 3 B 3 GLY A 241 ARG A 243 -1 O THR A 242 N ARG A 209 SHEET 1 C 2 ILE A 199 VAL A 202 0 SHEET 2 C 2 ASP A 260 LEU A 263 1 O ASP A 260 N ILE A 200 SHEET 1 D 7 VAL B 41 SER B 45 0 SHEET 2 D 7 GLU B 26 SER B 31 1 N GLY B 29 O GLU B 42 SHEET 3 D 7 ARG B 2 THR B 6 1 N ALA B 3 O GLU B 26 SHEET 4 D 7 TYR B 65 HIS B 68 1 O PHE B 67 N LEU B 4 SHEET 5 D 7 ARG B 108 SER B 114 1 O LEU B 110 N ILE B 66 SHEET 6 D 7 ASP B 161 THR B 167 1 O ASP B 161 N ILE B 109 SHEET 7 D 7 VAL B 233 VAL B 236 1 O TYR B 234 N ARG B 166 SHEET 1 E 3 ASN B 169 ILE B 171 0 SHEET 2 E 3 VAL B 208 ASP B 213 1 O THR B 212 N ILE B 171 SHEET 3 E 3 GLY B 241 ARG B 243 -1 O THR B 242 N ARG B 209 SHEET 1 F 2 ILE B 199 VAL B 202 0 SHEET 2 F 2 ASP B 260 LEU B 263 1 O ASP B 260 N ILE B 200 CISPEP 1 SER A 126 PRO A 127 0 -8.25 CISPEP 2 SER B 126 PRO B 127 0 -7.50 SITE 1 AC1 29 GLY A 10 PHE A 11 ARG A 32 LEU A 46 SITE 2 AC1 29 ASP A 47 ILE A 48 LEU A 69 ALA A 70 SITE 3 AC1 29 ALA A 71 SER A 73 ILE A 112 TYR A 140 SITE 4 AC1 29 LYS A 144 HIS A 170 HOH A 418 HOH A 424 SITE 5 AC1 29 HOH A 425 HOH A 430 HOH A 438 HOH A 449 SITE 6 AC1 29 HOH A 451 HOH A 475 HOH A 484 HOH A 493 SITE 7 AC1 29 HOH A 508 HOH A 509 HOH A 511 HOH A 524 SITE 8 AC1 29 HOH A 543 SITE 1 AC2 29 GLY B 10 PHE B 11 ARG B 32 LEU B 46 SITE 2 AC2 29 ASP B 47 ILE B 48 LEU B 69 ALA B 70 SITE 3 AC2 29 ALA B 71 SER B 73 THR B 88 ILE B 112 SITE 4 AC2 29 TYR B 140 LYS B 144 HIS B 170 HOH B 419 SITE 5 AC2 29 HOH B 426 HOH B 442 HOH B 450 HOH B 452 SITE 6 AC2 29 HOH B 457 HOH B 460 HOH B 469 HOH B 482 SITE 7 AC2 29 HOH B 485 HOH B 488 HOH B 495 HOH B 506 SITE 8 AC2 29 HOH B 569 SITE 1 AC3 29 SER A 73 SER A 114 SER A 115 TYR A 140 SITE 2 AC3 29 THR A 167 PHE A 168 ASN A 169 HIS A 170 SITE 3 AC3 29 GLY A 178 PHE A 179 ASP A 183 PHE A 184 SITE 4 AC3 29 GLY A 203 ASN A 204 ALA A 207 ARG A 209 SITE 5 AC3 29 ILE A 244 GLN A 267 ARG A 269 GLU A 272 SITE 6 AC3 29 HOH A 414 HOH A 421 HOH A 426 HOH A 432 SITE 7 AC3 29 HOH A 445 HOH A 450 HOH A 484 HOH A 494 SITE 8 AC3 29 HOH A 521 SITE 1 AC4 29 SER B 73 SER B 114 SER B 115 TYR B 140 SITE 2 AC4 29 THR B 167 PHE B 168 ASN B 169 HIS B 170 SITE 3 AC4 29 GLY B 178 PHE B 179 ASP B 183 PHE B 184 SITE 4 AC4 29 GLY B 203 ASN B 204 ALA B 207 ARG B 209 SITE 5 AC4 29 ILE B 244 GLN B 267 ARG B 269 GLU B 272 SITE 6 AC4 29 HOH B 413 HOH B 418 HOH B 420 HOH B 427 SITE 7 AC4 29 HOH B 455 HOH B 475 HOH B 480 HOH B 511 SITE 8 AC4 29 HOH B 566 CRYST1 46.882 55.744 79.244 72.54 82.95 75.61 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021330 -0.005473 -0.001148 0.00000 SCALE2 0.000000 0.018520 -0.005411 0.00000 SCALE3 0.000000 0.000000 0.013247 0.00000