HEADER TRANSFERASE 17-APR-07 2PKM TITLE CRYSTAL STRUCTURE OF M TUBERCULOSIS ADENOSINE KINASE COMPLEXED WITH TITLE 2 ADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.20; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: RV2202; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MYCOBACTERIUM TUBERCULOSIS, ADENOSINE KINASE, ADENOSINE, TRANSFERASE, KEYWDS 2 STRUCTURAL GENOMICS, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, PSI- KEYWDS 3 2, PROTEIN STRUCTURE INITIATIVE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.M.REDDY,S.K.PALANINATHAN,N.D.SHETTY,J.L.OWEN,M.D.WATSON, AUTHOR 2 J.C.SACCHETTINI,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 7 03-APR-24 2PKM 1 REMARK REVDAT 6 21-FEB-24 2PKM 1 REMARK SEQADV REVDAT 5 13-JUL-11 2PKM 1 VERSN REVDAT 4 24-FEB-09 2PKM 1 VERSN REVDAT 3 12-FEB-08 2PKM 1 REMARK REVDAT 2 09-OCT-07 2PKM 1 JRNL REVDAT 1 26-JUN-07 2PKM 0 JRNL AUTH M.C.M.REDDY,S.K.PALANINATHAN,N.D.SHETTY,J.L.OWEN,M.D.WATSON, JRNL AUTH 2 J.C.SACCHETTINI JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURES OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS ADENOSINE KINASE: INSIGHTS INTO THE MECHANISM JRNL TITL 3 AND SPECIFICITY OF THIS NOVEL PROKARYOTIC ENZYME JRNL REF J.BIOL.CHEM. V. 282 27334 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17597075 JRNL DOI 10.1074/JBC.M703290200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 24855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1299 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1801 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.4180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2444 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.187 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.878 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2522 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3434 ; 1.336 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 6.091 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;36.423 ;23.832 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 381 ;13.830 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.533 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 398 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1921 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1248 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1721 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 193 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 86 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.226 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1675 ; 2.458 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2583 ; 3.308 ; 7.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 972 ; 4.331 ; 9.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 851 ; 5.746 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000042479. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5412 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24855 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 62.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: APO MTB ADK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE OBTAINED IN CONDITIONS REMARK 280 CONTAINING 0.1 M HEPES-NA, PH 7.5 AND 1.4 M TRISODIUM CITRATE REMARK 280 DIHYDRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.93333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.86667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.86667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.93333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 73.86667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A -2 CG CD OE1 NE2 REMARK 470 LEU A 26 CG CD1 CD2 REMARK 470 LEU A 30 CG CD1 CD2 REMARK 470 HIS A 31 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 300 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 27 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 ASP A 299 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 27 7.55 -67.15 REMARK 500 ASP A 73 -6.69 -59.31 REMARK 500 SER A 171 -85.76 -1.92 REMARK 500 PRO A 234 -50.45 -20.16 REMARK 500 ASP A 299 69.83 -177.85 REMARK 500 TYR A 300 -20.61 -38.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 234 12.50 REMARK 500 ASP A 299 12.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RKA RELATED DB: PDB REMARK 900 RELATED ID: 1RKD RELATED DB: PDB REMARK 900 RELATED ID: 1BX4 RELATED DB: PDB REMARK 900 RELATED ID: 2PKF RELATED DB: PDB REMARK 900 RELATED ID: 2PKK RELATED DB: PDB REMARK 900 RELATED ID: 2PKN RELATED DB: PDB REMARK 900 RELATED ID: RV2202C RELATED DB: TARGETDB DBREF 2PKM A 1 324 UNP P83734 ADOK_MYCTU 1 324 SEQADV 2PKM GLY A -9 UNP P83734 CLONING ARTIFACT SEQADV 2PKM THR A -8 UNP P83734 CLONING ARTIFACT SEQADV 2PKM GLU A -7 UNP P83734 CLONING ARTIFACT SEQADV 2PKM ASP A -6 UNP P83734 CLONING ARTIFACT SEQADV 2PKM LEU A -5 UNP P83734 CLONING ARTIFACT SEQADV 2PKM TYR A -4 UNP P83734 CLONING ARTIFACT SEQADV 2PKM PHE A -3 UNP P83734 CLONING ARTIFACT SEQADV 2PKM GLN A -2 UNP P83734 CLONING ARTIFACT SEQADV 2PKM SER A -1 UNP P83734 CLONING ARTIFACT SEQADV 2PKM HIS A 0 UNP P83734 CLONING ARTIFACT SEQRES 1 A 334 GLY THR GLU ASP LEU TYR PHE GLN SER HIS MET THR ILE SEQRES 2 A 334 ALA VAL THR GLY SER ILE ALA THR ASP HIS LEU MET ARG SEQRES 3 A 334 PHE PRO GLY ARG PHE SER GLU GLN LEU LEU PRO GLU HIS SEQRES 4 A 334 LEU HIS LYS VAL SER LEU SER PHE LEU VAL ASP ASP LEU SEQRES 5 A 334 VAL MET HIS ARG GLY GLY VAL ALA GLY ASN MET ALA PHE SEQRES 6 A 334 ALA ILE GLY VAL LEU GLY GLY GLU VAL ALA LEU VAL GLY SEQRES 7 A 334 ALA ALA GLY ALA ASP PHE ALA ASP TYR ARG ASP TRP LEU SEQRES 8 A 334 LYS ALA ARG GLY VAL ASN CYS ASP HIS VAL LEU ILE SER SEQRES 9 A 334 GLU THR ALA HIS THR ALA ARG PHE THR CYS THR THR ASP SEQRES 10 A 334 VAL ASP MET ALA GLN ILE ALA SER PHE TYR PRO GLY ALA SEQRES 11 A 334 MET SER GLU ALA ARG ASN ILE LYS LEU ALA ASP VAL VAL SEQRES 12 A 334 SER ALA ILE GLY LYS PRO GLU LEU VAL ILE ILE GLY ALA SEQRES 13 A 334 ASN ASP PRO GLU ALA MET PHE LEU HIS THR GLU GLU CYS SEQRES 14 A 334 ARG LYS LEU GLY LEU ALA PHE ALA ALA ASP PRO SER GLN SEQRES 15 A 334 GLN LEU ALA ARG LEU SER GLY GLU GLU ILE ARG ARG LEU SEQRES 16 A 334 VAL ASN GLY ALA ALA TYR LEU PHE THR ASN ASP TYR GLU SEQRES 17 A 334 TRP ASP LEU LEU LEU SER LYS THR GLY TRP SER GLU ALA SEQRES 18 A 334 ASP VAL MET ALA GLN ILE ASP LEU ARG VAL THR THR LEU SEQRES 19 A 334 GLY PRO LYS GLY VAL ASP LEU VAL GLU PRO ASP GLY THR SEQRES 20 A 334 THR ILE HIS VAL GLY VAL VAL PRO GLU THR SER GLN THR SEQRES 21 A 334 ASP PRO THR GLY VAL GLY ASP ALA PHE ARG ALA GLY PHE SEQRES 22 A 334 LEU THR GLY ARG SER ALA GLY LEU GLY LEU GLU ARG SER SEQRES 23 A 334 ALA GLN LEU GLY SER LEU VAL ALA VAL LEU VAL LEU GLU SEQRES 24 A 334 SER THR GLY THR GLN GLU TRP GLN TRP ASP TYR GLU ALA SEQRES 25 A 334 ALA ALA SER ARG LEU ALA GLY ALA TYR GLY GLU HIS ALA SEQRES 26 A 334 ALA ALA GLU ILE VAL ALA VAL LEU ALA HET ADN A 501 19 HETNAM ADN ADENOSINE FORMUL 2 ADN C10 H13 N5 O4 FORMUL 3 HOH *225(H2 O) HELIX 1 1 ARG A 20 LEU A 25 1 6 HELIX 2 2 GLU A 28 LYS A 32 5 5 HELIX 3 3 GLY A 48 LEU A 60 1 13 HELIX 4 4 GLY A 71 ASP A 73 5 3 HELIX 5 5 PHE A 74 ALA A 83 1 10 HELIX 6 6 PRO A 118 ILE A 127 5 10 HELIX 7 7 LYS A 128 GLY A 137 1 10 HELIX 8 8 ASP A 148 GLY A 163 1 16 HELIX 9 9 PRO A 170 LEU A 174 5 5 HELIX 10 10 SER A 178 ARG A 184 1 7 HELIX 11 11 ASP A 196 GLY A 207 1 12 HELIX 12 12 SER A 209 ALA A 215 1 7 HELIX 13 13 GLY A 225 LYS A 227 5 3 HELIX 14 14 GLY A 254 ALA A 269 1 16 HELIX 15 15 GLY A 272 GLU A 289 1 18 HELIX 16 16 ASP A 299 GLY A 312 1 14 HELIX 17 17 GLY A 312 VAL A 322 1 11 SHEET 1 A 9 VAL A 86 ASN A 87 0 SHEET 2 A 9 VAL A 64 VAL A 67 1 N LEU A 66 O ASN A 87 SHEET 3 A 9 ILE A 3 THR A 6 1 N VAL A 5 O ALA A 65 SHEET 4 A 9 LEU A 141 GLY A 145 1 O ILE A 143 N ALA A 4 SHEET 5 A 9 PHE A 166 ASP A 169 1 O ALA A 167 N ILE A 144 SHEET 6 A 9 TYR A 191 ASN A 195 1 O TYR A 191 N ALA A 168 SHEET 7 A 9 ARG A 220 THR A 223 1 O VAL A 221 N LEU A 192 SHEET 8 A 9 VAL A 229 VAL A 232 -1 O VAL A 232 N ARG A 220 SHEET 9 A 9 THR A 238 VAL A 241 -1 O ILE A 239 N LEU A 231 SHEET 1 B 4 LEU A 42 GLY A 47 0 SHEET 2 B 4 ALA A 10 ARG A 16 -1 N LEU A 14 O VAL A 43 SHEET 3 B 4 ALA A 100 THR A 106 1 O PHE A 102 N HIS A 13 SHEET 4 B 4 GLN A 112 TYR A 117 -1 O TYR A 117 N ARG A 101 SHEET 1 C 2 ALA A 69 ALA A 70 0 SHEET 2 C 2 LEU A 92 ILE A 93 1 O LEU A 92 N ALA A 70 SITE 1 AC1 13 SER A 8 ASP A 12 SER A 36 GLY A 47 SITE 2 AC1 13 GLY A 48 VAL A 49 ASN A 52 PHE A 102 SITE 3 AC1 13 PHE A 116 GLN A 172 GLN A 173 ASP A 257 SITE 4 AC1 13 HOH A 573 CRYST1 71.900 71.900 110.800 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013908 0.008030 0.000000 0.00000 SCALE2 0.000000 0.016060 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009025 0.00000