HEADER HYDROLASE 19-APR-07 2PL3 TITLE HUMAN DEAD-BOX RNA HELICASE DDX10, DEAD DOMAIN IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ATP-DEPENDENT RNA HELICASE DDX10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DEAD DOMAIN; COMPND 5 SYNONYM: DEAD BOX PROTEIN 10; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDX10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS RNA, HELICASE, DEAD, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,L.LEHTIO,C.H.ARROWSMITH,H.BERGLUND,R.D.BUSAM,R.COLLINS, AUTHOR 2 L.G.DAHLGREN,A.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,B.M.HALLBERG, AUTHOR 3 M.HAMMARSTROM,I.JOHANSSON,A.KALLAS,T.KOTENYOVA,M.MOCHE,P.NORDLUND, AUTHOR 4 T.NYMAN,C.PERSSON,J.SAGEMARK,P.STENMARK,M.SUNDSTROM,A.G.THORSELL, AUTHOR 5 S.VAN DEN BERG,J.WEIGELT,L.HOLMBERG-SCHIAVONE,STRUCTURAL GENOMICS AUTHOR 6 CONSORTIUM (SGC) REVDAT 6 30-AUG-23 2PL3 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2PL3 1 REMARK REVDAT 4 13-JUL-11 2PL3 1 VERSN REVDAT 3 27-OCT-10 2PL3 1 JRNL REVDAT 2 24-FEB-09 2PL3 1 VERSN REVDAT 1 01-MAY-07 2PL3 0 JRNL AUTH P.SCHUTZ,T.KARLBERG,S.VAN DEN BERG,R.COLLINS,L.LEHTIO, JRNL AUTH 2 M.HOGBOM,L.HOLMBERG-SCHIAVONE,W.TEMPEL,H.W.PARK, JRNL AUTH 3 M.HAMMARSTROM,M.MOCHE,A.G.THORSELL,H.SCHULER JRNL TITL COMPARATIVE STRUCTURAL ANALYSIS OF HUMAN DEAD-BOX RNA JRNL TITL 2 HELICASES. JRNL REF PLOS ONE V. 5 12791 2010 JRNL REFN ESSN 1932-6203 JRNL PMID 20941364 JRNL DOI 10.1371/JOURNAL.PONE.0012791 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1045 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1422 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1814 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.234 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1881 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1263 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2541 ; 1.695 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3093 ; 1.034 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 6.684 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;37.855 ;24.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 343 ;15.813 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.476 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 301 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2022 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 354 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 344 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1270 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 874 ; 0.177 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 974 ; 0.096 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 151 ; 0.171 ; 0.300 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.104 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 41 ; 0.284 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.356 ; 0.300 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1188 ; 0.949 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 475 ; 0.202 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1857 ; 1.564 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 782 ; 2.248 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 683 ; 3.490 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8060 -32.4700 -6.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: -0.0154 REMARK 3 T33: -0.1055 T12: 0.2017 REMARK 3 T13: 0.0411 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 14.6083 L22: 30.3815 REMARK 3 L33: 0.0000 L12: -3.9720 REMARK 3 L13: -0.1874 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.3848 S12: -0.3073 S13: -0.0220 REMARK 3 S21: 0.5616 S22: 0.4356 S23: -0.0503 REMARK 3 S31: -0.3125 S32: -0.9057 S33: -0.0508 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): -13.1670 -20.9870 3.3910 REMARK 3 T TENSOR REMARK 3 T11: 0.0229 T22: -0.1666 REMARK 3 T33: -0.0983 T12: 0.0610 REMARK 3 T13: 0.0322 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 1.5458 L22: 2.5761 REMARK 3 L33: 3.3154 L12: -0.2355 REMARK 3 L13: 0.3958 L23: -0.1020 REMARK 3 S TENSOR REMARK 3 S11: -0.0905 S12: 0.0925 S13: -0.1568 REMARK 3 S21: -0.0189 S22: 0.0084 S23: 0.2556 REMARK 3 S31: 0.6357 S32: 0.1857 S33: 0.0822 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): -5.9590 -25.0490 21.2170 REMARK 3 T TENSOR REMARK 3 T11: 0.4344 T22: -0.1138 REMARK 3 T33: -0.1985 T12: 0.2583 REMARK 3 T13: 0.0672 T23: 0.2122 REMARK 3 L TENSOR REMARK 3 L11: 9.0208 L22: 5.4530 REMARK 3 L33: 13.6122 L12: 2.1047 REMARK 3 L13: 6.4454 L23: 2.8393 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: -1.0661 S13: -0.4288 REMARK 3 S21: 2.0297 S22: 0.3011 S23: -0.2848 REMARK 3 S31: 2.0965 S32: 0.6237 S33: -0.3503 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 189 A 278 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8460 -9.8380 12.9300 REMARK 3 T TENSOR REMARK 3 T11: -0.0510 T22: 0.0593 REMARK 3 T33: -0.1719 T12: 0.0718 REMARK 3 T13: -0.0331 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 0.9850 L22: 3.3747 REMARK 3 L33: 3.5477 L12: -0.5630 REMARK 3 L13: -0.3574 L23: -0.2052 REMARK 3 S TENSOR REMARK 3 S11: -0.1534 S12: -0.2295 S13: 0.0356 REMARK 3 S21: 0.3981 S22: 0.0690 S23: -0.1024 REMARK 3 S31: 0.0280 S32: 0.6979 S33: 0.0843 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042496. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04123 REMARK 200 MONOCHROMATOR : BENT GERMANIUM CRYSTAL, REMARK 200 HORIZONTAL FOCUSING REMARK 200 OPTICS : MULTILAYER MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20889 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 25.40 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.01700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 54.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.50 REMARK 200 R MERGE FOR SHELL (I) : 0.16000 REMARK 200 R SYM FOR SHELL (I) : 0.04700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 24.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2GXS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% ETHANOL, 50MM SODIUM CHLORIDE, REMARK 280 100MM TRIS-HCL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.33667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 202.67333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 152.00500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 253.34167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.66833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 101.33667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 202.67333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 253.34167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 152.00500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 50.66833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE MONOMER IN THE ASU IS THE BIOLOGICAL ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 179 REMARK 465 ASP A 180 REMARK 465 LYS A 279 REMARK 465 ALA A 280 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 LEU A 181 CG CD1 CD2 REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 90 O LEU A 134 8445 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 270 64.23 36.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 45 MET A 46 -48.66 REMARK 500 MET A 46 GLN A 47 -145.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 223 OE2 REMARK 620 2 ADP A 300 O1B 94.3 REMARK 620 3 HOH A 404 O 85.4 84.9 REMARK 620 4 HOH A 405 O 91.7 173.9 95.3 REMARK 620 5 HOH A 406 O 178.9 86.3 93.7 87.7 REMARK 620 6 HOH A 469 O 89.0 86.5 169.3 93.9 92.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 403 DBREF 2PL3 A 47 280 UNP Q13206 DDX10_HUMAN 47 280 SEQADV 2PL3 SER A 45 UNP Q13206 CLONING ARTIFACT SEQADV 2PL3 MET A 46 UNP Q13206 CLONING ARTIFACT SEQRES 1 A 236 SER MET GLN VAL GLU ARG GLU SER ILE SER ARG LEU MET SEQRES 2 A 236 GLN ASN TYR GLU LYS ILE ASN VAL ASN GLU ILE THR ARG SEQRES 3 A 236 PHE SER ASP PHE PRO LEU SER LYS LYS THR LEU LYS GLY SEQRES 4 A 236 LEU GLN GLU ALA GLN TYR ARG LEU VAL THR GLU ILE GLN SEQRES 5 A 236 LYS GLN THR ILE GLY LEU ALA LEU GLN GLY LYS ASP VAL SEQRES 6 A 236 LEU GLY ALA ALA LYS THR GLY SER GLY LYS THR LEU ALA SEQRES 7 A 236 PHE LEU VAL PRO VAL LEU GLU ALA LEU TYR ARG LEU GLN SEQRES 8 A 236 TRP THR SER THR ASP GLY LEU GLY VAL LEU ILE ILE SER SEQRES 9 A 236 PRO THR ARG GLU LEU ALA TYR GLN THR PHE GLU VAL LEU SEQRES 10 A 236 ARG LYS VAL GLY LYS ASN HIS ASP PHE SER ALA GLY LEU SEQRES 11 A 236 ILE ILE GLY GLY LYS ASP LEU LYS HIS GLU ALA GLU ARG SEQRES 12 A 236 ILE ASN ASN ILE ASN ILE LEU VAL CYS THR PRO GLY ARG SEQRES 13 A 236 LEU LEU GLN HIS MET ASP GLU THR VAL SER PHE HIS ALA SEQRES 14 A 236 THR ASP LEU GLN MET LEU VAL LEU ASP GLU ALA ASP ARG SEQRES 15 A 236 ILE LEU ASP MET GLY PHE ALA ASP THR MET ASN ALA VAL SEQRES 16 A 236 ILE GLU ASN LEU PRO LYS LYS ARG GLN THR LEU LEU PHE SEQRES 17 A 236 SER ALA THR GLN THR LYS SER VAL LYS ASP LEU ALA ARG SEQRES 18 A 236 LEU SER LEU LYS ASN PRO GLU TYR VAL TRP VAL HIS GLU SEQRES 19 A 236 LYS ALA HET MG A 301 1 HET ADP A 300 27 HET EOH A 400 3 HET EOH A 401 3 HET EOH A 402 3 HET EOH A 403 3 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM EOH ETHANOL FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 EOH 4(C2 H6 O) FORMUL 8 HOH *66(H2 O) HELIX 1 1 MET A 46 ASN A 59 1 14 HELIX 2 2 ASN A 64 ILE A 68 5 5 HELIX 3 3 ARG A 70 PHE A 74 5 5 HELIX 4 4 SER A 77 ALA A 87 1 11 HELIX 5 5 THR A 93 GLN A 105 1 13 HELIX 6 6 GLY A 118 LEU A 134 1 17 HELIX 7 7 THR A 137 GLY A 141 5 5 HELIX 8 8 THR A 150 GLY A 165 1 16 HELIX 9 9 LEU A 181 ASN A 189 1 9 HELIX 10 10 THR A 197 THR A 208 1 12 HELIX 11 11 GLU A 223 MET A 230 1 8 HELIX 12 12 PHE A 232 ASN A 242 1 11 HELIX 13 13 THR A 257 SER A 267 1 11 SHEET 1 A 7 ALA A 172 ILE A 175 0 SHEET 2 A 7 ILE A 193 CYS A 196 1 O VAL A 195 N ILE A 175 SHEET 3 A 7 VAL A 144 ILE A 147 1 N ILE A 146 O LEU A 194 SHEET 4 A 7 MET A 218 LEU A 221 1 O VAL A 220 N ILE A 147 SHEET 5 A 7 GLN A 248 SER A 253 1 O LEU A 250 N LEU A 219 SHEET 6 A 7 VAL A 109 ALA A 112 1 N VAL A 109 O LEU A 251 SHEET 7 A 7 GLU A 272 TRP A 275 1 O GLU A 272 N LEU A 110 LINK OE2 GLU A 223 MG MG A 301 1555 1555 2.07 LINK O1B ADP A 300 MG MG A 301 1555 1555 2.11 LINK MG MG A 301 O HOH A 404 1555 1555 2.16 LINK MG MG A 301 O HOH A 405 1555 1555 2.18 LINK MG MG A 301 O HOH A 406 1555 1555 2.15 LINK MG MG A 301 O HOH A 469 1555 1555 2.20 SITE 1 AC1 6 GLU A 223 ADP A 300 HOH A 404 HOH A 405 SITE 2 AC1 6 HOH A 406 HOH A 469 SITE 1 AC2 22 SER A 45 MET A 46 GLN A 47 ARG A 50 SITE 2 AC2 22 PHE A 71 TYR A 89 LEU A 91 GLN A 96 SITE 3 AC2 22 THR A 115 GLY A 116 SER A 117 GLY A 118 SITE 4 AC2 22 LYS A 119 THR A 120 GLU A 223 MG A 301 SITE 5 AC2 22 HOH A 404 HOH A 406 HOH A 410 HOH A 415 SITE 6 AC2 22 HOH A 448 HOH A 469 SITE 1 AC3 1 LEU A 153 SITE 1 AC4 5 GLN A 98 GLN A 256 LYS A 258 LYS A 261 SITE 2 AC4 5 HOH A 417 SITE 1 AC5 5 ALA A 112 ALA A 254 TRP A 275 VAL A 276 SITE 2 AC5 5 HIS A 277 SITE 1 AC6 4 ALA A 233 ASN A 237 LEU A 263 LEU A 266 CRYST1 63.500 63.500 304.010 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015748 0.009092 0.000000 0.00000 SCALE2 0.000000 0.018184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003289 0.00000