HEADER HYDROLASE 20-APR-07 2PLQ TITLE CRYSTAL STRUCTURE OF THE AMIDASE FROM GEOBACILLUS PALLIDUS RAPC8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALIPHATIC AMIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACYLAMIDE AMIDOHYDROLASE; COMPND 5 EC: 3.5.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS PALLIDUS; SOURCE 3 ORGANISM_TAXID: 33936; SOURCE 4 STRAIN: RAPC8; SOURCE 5 GENE: AMIE, AMI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21A; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNH223 KEYWDS NITRILASE FOLD, ALPHA-BETA-BETA-ALPHA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.W.KIMANI,B.T.SEWELL,V.B.AGARKAR,M.F.SAYED,D.A.COWAN REVDAT 5 30-AUG-23 2PLQ 1 REMARK REVDAT 4 18-OCT-17 2PLQ 1 REMARK REVDAT 3 13-JUL-11 2PLQ 1 VERSN REVDAT 2 24-FEB-09 2PLQ 1 VERSN REVDAT 1 01-MAY-07 2PLQ 0 JRNL AUTH V.B.AGARKAR,S.W.KIMANI,D.A.COWAN,M.F.SAYED,B.T.SEWELL JRNL TITL THE QUATERNARY STRUCTURE OF THE AMIDASE FROM GEOBACILLUS JRNL TITL 2 PALLIDUS RAPC8 IS REVEALED BY ITS CRYSTAL PACKING. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 62 1174 2006 JRNL REFN ESSN 1744-3091 JRNL PMID 17142891 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.W.KIMANI REMARK 1 TITL THE CRYSTAL STRUCTURE OF AN ALIPHATIC AMIDASE FROM REMARK 1 TITL 2 GEOBACILLUS PALLIDUS RAPC8 REMARK 1 REF THESIS 1 2007 REMARK 1 REFERENCE 2 REMARK 1 TITL THE CRYSTAL STRUCTURE OF AN ALIPHATIC AMIDASE FROM REMARK 1 TITL 2 GEOBACILLUS PALLIDUS RAPC8 REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 30253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1501 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1978 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.1760 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.104 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.013 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.290 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; 6.759 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ;33.307 ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ;12.557 ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ;18.259 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 0.091 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; 0.005 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DENSITY SUFFICIENT TO ACCOMMODATE TWO ADDITIONAL REMARK 3 ATOMS CONNECTED TO THE SULFUR OF CYS 166 WAS OBSERVED IN THE REMARK 3 ACTIVE SITE. THIS DENSITY WAS INTERPRETED TO INDICATE OXIDATION REMARK 3 OF THE CYSTEINE TO SULFINIC ACID BUT THIS WAS NOT CONFIRMED AND REMARK 3 CO-ORDINATES OF THESE ATOMS ARE NOT INCLUDED IN THE DEPOSITION. REMARK 4 REMARK 4 2PLQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042515. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : AXCO PX50 0.1MM FOCUS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30300 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.31500 REMARK 200 R SYM FOR SHELL (I) : 0.31500 REMARK 200 FOR SHELL : 3.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, PHENIX REMARK 200 STARTING MODEL: 1J31 WITH NON-IDENTICAL SIDE CHAINS REPLACED BY REMARK 200 ALANINE. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PURIFIED ENZYME WAS CONCENTRATED REMARK 280 TO 10 MG ML-1 AND THEN CRYSTALLIZED WITH 1.2 M SODIUM CITRATE, REMARK 280 400 MM NACL, 100 MM SODIUM ACETATE, PH 5.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 14555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 16555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 17555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 18555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 19555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 20555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 21555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 22555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 23555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 24555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 65.19900 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 65.19900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 65.19900 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 65.19900 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 65.19900 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 65.19900 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 65.19900 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 65.19900 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 65.19900 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 65.19900 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 65.19900 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 65.19900 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 65.19900 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 65.19900 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 65.19900 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 65.19900 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 65.19900 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 65.19900 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 65.19900 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 65.19900 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 65.19900 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 65.19900 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 65.19900 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 65.19900 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 65.19900 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 65.19900 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 65.19900 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 65.19900 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 65.19900 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 65.19900 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 65.19900 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 65.19900 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 65.19900 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 65.19900 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 65.19900 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 65.19900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: FOUR BIOLOGICAL ASSEMBLIES ARE GENERATED BY APPLYING THE REMARK 300 SPACE GROUP SYMMETRY OPERATORS. OUR NOMENCLATURE A,B,C,D,E,F REFERS REMARK 300 TO A HEXAMER GENERATED AS FOLLOWS: A -X, Y, -Z B -Z+1/2, -Y+1/2, -X+ REMARK 300 1/2 C Y, Z, X D -Y+1/2, X+1/2, Z+1/2 E Z, -X, -Y F X+1/2, -Z+1/2, Y+ REMARK 300 1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 43030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -243.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 65.19900 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 -65.19900 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -65.19900 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 65.19900 REMARK 350 BIOMT2 5 0.000000 0.000000 -1.000000 -65.19900 REMARK 350 BIOMT3 5 0.000000 -1.000000 0.000000 -65.19900 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 65.19900 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 -65.19900 REMARK 350 BIOMT3 6 1.000000 0.000000 0.000000 -65.19900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1038 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1050 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1083 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1108 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1158 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1305 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 341 REMARK 465 LYS A 342 REMARK 465 THR A 343 REMARK 465 LYS A 344 REMARK 465 GLU A 345 REMARK 465 ILE A 346 REMARK 465 GLY A 347 REMARK 465 VAL A 348 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 26 -21.07 -140.36 REMARK 500 LYS A 157 19.77 57.96 REMARK 500 CYS A 166 -109.15 45.65 REMARK 500 ALA A 196 48.81 -80.30 REMARK 500 VAL A 226 -55.79 -127.24 REMARK 500 GLN A 271 -64.63 -123.57 REMARK 500 ASP A 311 71.01 -152.19 REMARK 500 THR A 323 -94.18 -121.60 REMARK 500 CYS A 332 71.13 -150.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SOURCE ORGANISM IS LISTED IN GENBANK ENTRY AAO23013 REMARK 999 AND UNP ENTRY Q9L543 AS BACILLUS SP. IT IS CORRECTLY REMARK 999 CLASSIFIED BY ITS 16S RNA SEQUENCE AS GEOBACILLUS PALLIDUS. DBREF 2PLQ A 1 348 UNP Q9L543 AMIE_BACSP 1 348 SEQRES 1 A 348 MET ARG HIS GLY ASP ILE SER SER SER HIS ASP THR VAL SEQRES 2 A 348 GLY ILE ALA VAL VAL ASN TYR LYS MET PRO ARG LEU HIS SEQRES 3 A 348 THR LYS ALA GLU VAL ILE GLU ASN ALA LYS LYS ILE ALA SEQRES 4 A 348 ASP MET VAL VAL GLY MET LYS GLN GLY LEU PRO GLY MET SEQRES 5 A 348 ASP LEU VAL VAL PHE PRO GLU TYR SER THR MET GLY ILE SEQRES 6 A 348 MET TYR ASP GLN ASP GLU MET PHE ALA THR ALA ALA SER SEQRES 7 A 348 ILE PRO GLY GLU GLU THR ALA ILE PHE ALA GLU ALA CYS SEQRES 8 A 348 LYS LYS ALA ASP THR TRP GLY VAL PHE SER LEU THR GLY SEQRES 9 A 348 GLU LYS HIS GLU ASP HIS PRO ASN LYS ALA PRO TYR ASN SEQRES 10 A 348 THR LEU VAL LEU ILE ASN ASN LYS GLY GLU ILE VAL GLN SEQRES 11 A 348 LYS TYR ARG LYS ILE ILE PRO TRP CYS PRO ILE GLU GLY SEQRES 12 A 348 TRP TYR PRO GLY ASP THR THR TYR VAL THR GLU GLY PRO SEQRES 13 A 348 LYS GLY LEU LYS ILE SER LEU ILE VAL CYS ASP ASP GLY SEQRES 14 A 348 ASN TYR PRO GLU ILE TRP ARG ASP CYS ALA MET LYS GLY SEQRES 15 A 348 ALA GLU LEU ILE VAL ARG CYS GLN GLY TYR MET TYR PRO SEQRES 16 A 348 ALA LYS GLU GLN GLN ILE MET MET ALA LYS ALA MET ALA SEQRES 17 A 348 TRP ALA ASN ASN THR TYR VAL ALA VAL ALA ASN ALA THR SEQRES 18 A 348 GLY PHE ASP GLY VAL TYR SER TYR PHE GLY HIS SER ALA SEQRES 19 A 348 ILE ILE GLY PHE ASP GLY ARG THR LEU GLY GLU CYS GLY SEQRES 20 A 348 THR GLU GLU ASN GLY ILE GLN TYR ALA GLU VAL SER ILE SEQRES 21 A 348 SER GLN ILE ARG ASP PHE ARG LYS ASN ALA GLN SER GLN SEQRES 22 A 348 ASN HIS LEU PHE LYS LEU LEU HIS ARG GLY TYR THR GLY SEQRES 23 A 348 LEU ILE ASN SER GLY GLU GLY ASP ARG GLY VAL ALA GLU SEQRES 24 A 348 CYS PRO PHE ASP PHE TYR ARG THR TRP VAL LEU ASP ALA SEQRES 25 A 348 GLU LYS ALA ARG GLU ASN VAL GLU LYS ILE THR ARG SER SEQRES 26 A 348 THR VAL GLY THR ALA GLU CYS PRO ILE GLN GLY ILE PRO SEQRES 27 A 348 ASN GLU GLY LYS THR LYS GLU ILE GLY VAL FORMUL 2 HOH *305(H2 O) HELIX 1 1 THR A 27 LEU A 49 1 23 HELIX 2 2 ASP A 68 ALA A 76 1 9 HELIX 3 3 GLY A 81 ASP A 95 1 15 HELIX 4 4 PRO A 156 GLY A 158 5 3 HELIX 5 5 ASP A 167 ASN A 170 5 4 HELIX 6 6 TYR A 171 LYS A 181 1 11 HELIX 7 7 ALA A 196 ASN A 211 1 16 HELIX 8 8 ILE A 260 ALA A 270 1 11 HELIX 9 9 ASN A 274 LEU A 280 1 7 HELIX 10 10 GLY A 283 SER A 290 1 8 HELIX 11 11 PHE A 302 ASP A 311 1 10 HELIX 12 12 ASP A 311 THR A 323 1 13 SHEET 1 A 6 ILE A 128 ARG A 133 0 SHEET 2 A 6 TYR A 116 ILE A 122 -1 N LEU A 121 O VAL A 129 SHEET 3 A 6 TRP A 97 GLU A 105 -1 N GLU A 105 O TYR A 116 SHEET 4 A 6 MET A 52 VAL A 56 1 N ASP A 53 O TRP A 97 SHEET 5 A 6 THR A 12 VAL A 18 1 N GLY A 14 O ASP A 53 SHEET 6 A 6 ILE A 253 SER A 259 -1 O ALA A 256 N ILE A 15 SHEET 1 B 6 THR A 153 GLU A 154 0 SHEET 2 B 6 LYS A 160 VAL A 165 -1 O ILE A 161 N THR A 153 SHEET 3 B 6 LEU A 185 GLN A 190 1 O VAL A 187 N SER A 162 SHEET 4 B 6 TYR A 214 ASN A 219 1 O ALA A 216 N ARG A 188 SHEET 5 B 6 ALA A 234 ILE A 236 -1 O ALA A 234 N VAL A 217 SHEET 6 B 6 THR A 242 GLU A 245 -1 O LEU A 243 N ILE A 235 SHEET 1 C 2 THR A 221 PHE A 223 0 SHEET 2 C 2 SER A 228 PHE A 230 -1 O TYR A 229 N GLY A 222 CISPEP 1 ILE A 79 PRO A 80 0 0.01 CISPEP 2 THR A 103 GLY A 104 0 7.05 CISPEP 3 HIS A 110 PRO A 111 0 -2.26 CISPEP 4 CYS A 139 PRO A 140 0 5.06 CISPEP 5 TYR A 194 PRO A 195 0 17.49 CRYST1 130.398 130.398 130.398 90.00 90.00 90.00 P 42 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007669 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007669 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007669 0.00000