HEADER TRANSFERASE 23-APR-07 2PML TITLE CRYSTAL STRUCTURE OF PFPK7 IN COMPLEX WITH AN ATP ANALOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SER/THR PROTEIN KINASE; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: PFPK7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM; SOURCE 4 ORGANISM_TAXID: 5833; SOURCE 5 GENE: PFB0605W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS SER/THR PROTEIN KINASE; PLASMODIUM FALCIPARUM; PHOSPHORYLATION; KEYWDS 2 TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MERCKX,A.ECHALIER,M.NOBLE,J.ENDICOTT REVDAT 4 21-FEB-24 2PML 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2PML 1 VERSN REVDAT 2 24-FEB-09 2PML 1 VERSN REVDAT 1 22-JAN-08 2PML 0 JRNL AUTH A.MERCKX,A.ECHALIER,K.LANGFORD,A.SICARD,G.LANGSLEY,J.JOORE, JRNL AUTH 2 C.DOERIG,M.NOBLE,J.ENDICOTT JRNL TITL STRUCTURES OF PFPK7 AN ATYPICAL PROTEIN KINASE FROM P. JRNL TITL 2 FALCIPARUM IDENTIFY A NOVEL ACTIVATION MOTIF AND LEADS FOR JRNL TITL 3 INHIBITOR DESIGN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.327 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 629 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 862 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2856 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.477 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.421 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.346 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.868 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2963 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3991 ; 1.349 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 6.484 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;39.601 ;24.830 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 575 ;20.824 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.501 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2190 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1445 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2019 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 101 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1759 ; 0.478 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2775 ; 0.813 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1385 ; 0.931 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1216 ; 1.470 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 10 X 340 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0520 16.6300 -20.7480 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: -0.0963 REMARK 3 T33: -0.2840 T12: -0.0404 REMARK 3 T13: 0.0855 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 3.6646 L22: 4.3743 REMARK 3 L33: 3.2981 L12: -0.1880 REMARK 3 L13: 0.4667 L23: -1.2475 REMARK 3 S TENSOR REMARK 3 S11: 0.1714 S12: 0.3739 S13: 0.2149 REMARK 3 S21: -0.4295 S22: -0.0846 S23: 0.1516 REMARK 3 S31: 0.1407 S32: 0.0859 S33: -0.0868 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PML COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042543. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762, 0.9791, 0.9792, 0.9686 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13019 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH7.5; 20% PEG 10K, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.13650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.13650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.27700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.89750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.27700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.89750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.13650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.27700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.89750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.13650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.27700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.89750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). AUTHORS STATE THAT THE BIOLOGICAL REMARK 300 UNIT IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4690 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -69.13650 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN X 280 REMARK 465 LYS X 281 REMARK 465 LYS X 282 REMARK 465 SER X 283 REMARK 465 THR X 284 REMARK 465 CYS X 285 REMARK 465 SER X 286 REMARK 465 ASN X 287 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU X 266 CD GLU X 266 OE1 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP X 27 -24.00 85.73 REMARK 500 PHE X 39 -64.69 -127.42 REMARK 500 ASN X 40 -82.24 -67.98 REMARK 500 LYS X 41 133.93 93.96 REMARK 500 ASP X 48 -104.75 62.46 REMARK 500 LYS X 65 71.38 91.95 REMARK 500 THR X 69 -156.39 -75.27 REMARK 500 LYS X 70 -125.19 -73.60 REMARK 500 SER X 71 -56.88 -162.58 REMARK 500 ASN X 72 -58.02 67.66 REMARK 500 ASP X 74 -2.13 62.54 REMARK 500 LYS X 75 48.06 -85.56 REMARK 500 ILE X 76 -177.07 46.94 REMARK 500 ASP X 111 -71.54 -135.91 REMARK 500 ASP X 123 -150.91 57.02 REMARK 500 ASP X 129 -76.60 -147.89 REMARK 500 THR X 140 -89.46 -71.36 REMARK 500 CYS X 141 118.63 64.15 REMARK 500 ASP X 172 43.12 -158.89 REMARK 500 ASP X 190 93.56 51.66 REMARK 500 LYS X 200 -7.14 71.52 REMARK 500 LYS X 203 -81.16 -39.39 REMARK 500 SER X 205 90.06 64.51 REMARK 500 ARG X 206 141.96 -171.90 REMARK 500 SER X 218 -168.90 -102.09 REMARK 500 SER X 221 -28.04 83.48 REMARK 500 PRO X 246 -111.20 -54.46 REMARK 500 SER X 248 -107.96 -48.39 REMARK 500 LEU X 249 156.10 63.82 REMARK 500 ILE X 251 97.01 38.40 REMARK 500 LYS X 263 136.14 151.24 REMARK 500 PRO X 268 -148.35 -82.92 REMARK 500 ASP X 270 -74.00 19.71 REMARK 500 ASN X 272 -48.66 -149.75 REMARK 500 LEU X 290 -157.57 -72.59 REMARK 500 ASN X 292 -54.46 -17.90 REMARK 500 LYS X 341 14.00 37.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN X 383 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN X 177 OD1 REMARK 620 2 ASP X 190 OD2 112.1 REMARK 620 3 ANP X 381 O2A 98.8 94.2 REMARK 620 4 ANP X 381 O3G 125.2 120.9 90.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN X 383 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP X 381 DBREF 2PML X 1 343 UNP Q7YTF7 Q7YTF7_PLAF7 1 343 SEQADV 2PML GLY X -4 UNP Q7YTF7 EXPRESSION TAG SEQADV 2PML PRO X -3 UNP Q7YTF7 EXPRESSION TAG SEQADV 2PML LEU X -2 UNP Q7YTF7 EXPRESSION TAG SEQADV 2PML GLY X -1 UNP Q7YTF7 EXPRESSION TAG SEQADV 2PML SER X 0 UNP Q7YTF7 EXPRESSION TAG SEQRES 1 X 348 GLY PRO LEU GLY SER MET LYS ASP ILE LEU SER ASN TYR SEQRES 2 X 348 SER ASN LEU ILE TYR LEU ASN LYS TYR VAL LYS GLU LYS SEQRES 3 X 348 ASP LYS TYR ILE ASN ASP TYR ARG ILE ILE ARG THR LEU SEQRES 4 X 348 ASN GLN GLY LYS PHE ASN LYS ILE ILE LEU CYS GLU LYS SEQRES 5 X 348 ASP ASN LYS PHE TYR ALA LEU LYS LYS TYR GLU LYS SER SEQRES 6 X 348 LEU LEU GLU LYS LYS ARG ASP PHE THR LYS SER ASN ASN SEQRES 7 X 348 ASP LYS ILE SER ILE LYS SER LYS TYR ASP ASP PHE LYS SEQRES 8 X 348 ASN GLU LEU GLN ILE ILE THR ASP ILE LYS ASN GLU TYR SEQRES 9 X 348 CYS LEU THR CYS GLU GLY ILE ILE THR ASN TYR ASP GLU SEQRES 10 X 348 VAL TYR ILE ILE TYR GLU TYR MET GLU ASN ASP SER ILE SEQRES 11 X 348 LEU LYS PHE ASP GLU TYR PHE PHE VAL LEU ASP LYS ASN SEQRES 12 X 348 TYR THR CYS PHE ILE PRO ILE GLN VAL ILE LYS CYS ILE SEQRES 13 X 348 ILE LYS SER VAL LEU ASN SER PHE SER TYR ILE HIS ASN SEQRES 14 X 348 GLU LYS ASN ILE CYS HIS ARG ASP VAL LYS PRO SER ASN SEQRES 15 X 348 ILE LEU MET ASP LYS ASN GLY ARG VAL LYS LEU SER ASP SEQRES 16 X 348 PHE GLY GLU SER GLU TYR MET VAL ASP LYS LYS ILE LYS SEQRES 17 X 348 GLY SER ARG GLY THR TYR GLU PHE MET PRO PRO GLU PHE SEQRES 18 X 348 PHE SER ASN GLU SER SER TYR ASN GLY ALA LYS VAL ASP SEQRES 19 X 348 ILE TRP SER LEU GLY ILE CYS LEU TYR VAL MET PHE TYR SEQRES 20 X 348 ASN VAL VAL PRO PHE SER LEU LYS ILE SER LEU VAL GLU SEQRES 21 X 348 LEU PHE ASN ASN ILE ARG THR LYS ASN ILE GLU TYR PRO SEQRES 22 X 348 LEU ASP ARG ASN HIS PHE LEU TYR PRO LEU THR ASN LYS SEQRES 23 X 348 LYS SER THR CYS SER ASN ASN PHE LEU SER ASN GLU ASP SEQRES 24 X 348 ILE ASP PHE LEU LYS LEU PHE LEU ARG LYS ASN PRO ALA SEQRES 25 X 348 GLU ARG ILE THR SER GLU ASP ALA LEU LYS HIS GLU TRP SEQRES 26 X 348 LEU ALA ASP THR ASN ILE GLU ASP LEU ARG GLU PHE SER SEQRES 27 X 348 LYS GLU LEU TYR LYS LYS ARG LYS LYS LEU HET MN X 383 1 HET ANP X 381 31 HETNAM MN MANGANESE (II) ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 2 MN MN 2+ FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 HOH *27(H2 O) HELIX 1 1 SER X 0 SER X 6 1 7 HELIX 2 2 LYS X 59 GLU X 63 1 5 HELIX 3 3 LYS X 81 THR X 93 1 13 HELIX 4 4 PRO X 144 GLU X 165 1 22 HELIX 5 5 LYS X 174 SER X 176 5 3 HELIX 6 6 THR X 208 MET X 212 5 5 HELIX 7 7 PRO X 213 SER X 218 5 6 HELIX 8 8 GLY X 225 ASN X 243 1 19 HELIX 9 9 LEU X 253 ARG X 261 1 9 HELIX 10 10 SER X 291 LEU X 302 1 12 HELIX 11 11 ASN X 305 ARG X 309 5 5 HELIX 12 12 THR X 311 LYS X 317 1 7 HELIX 13 13 HIS X 318 ALA X 322 5 5 HELIX 14 14 ASN X 325 ARG X 340 1 16 SHEET 1 A 8 LEU X 11 TYR X 13 0 SHEET 2 A 8 GLY X 105 THR X 108 1 O ILE X 106 N ILE X 12 SHEET 3 A 8 GLU X 112 GLU X 118 -1 O TYR X 114 N ILE X 107 SHEET 4 A 8 LYS X 50 GLU X 58 -1 N TYR X 57 O VAL X 113 SHEET 5 A 8 ILE X 42 LYS X 47 -1 N ILE X 43 O LEU X 54 SHEET 6 A 8 TYR X 28 ASN X 35 -1 N ARG X 29 O GLU X 46 SHEET 7 A 8 LYS X 23 ILE X 25 -1 N ILE X 25 O TYR X 28 SHEET 8 A 8 LYS X 16 VAL X 18 -1 N TYR X 17 O TYR X 24 SHEET 1 B 2 ARG X 66 PHE X 68 0 SHEET 2 B 2 ILE X 78 SER X 80 -1 O LYS X 79 N ASP X 67 SHEET 1 C 2 LYS X 127 PHE X 128 0 SHEET 2 C 2 PHE X 132 PHE X 133 -1 O PHE X 133 N LYS X 127 SHEET 1 D 2 ILE X 168 CYS X 169 0 SHEET 2 D 2 GLU X 195 TYR X 196 -1 O GLU X 195 N CYS X 169 SHEET 1 E 2 ILE X 178 MET X 180 0 SHEET 2 E 2 VAL X 186 LEU X 188 -1 O LYS X 187 N LEU X 179 SHEET 1 F 2 LYS X 201 ILE X 202 0 SHEET 2 F 2 TYR X 223 ASN X 224 -1 O TYR X 223 N ILE X 202 LINK OD1 ASN X 177 MN MN X 383 1555 1555 2.46 LINK OD2 ASP X 190 MN MN X 383 1555 1555 2.42 LINK O2A ANP X 381 MN MN X 383 1555 1555 2.28 LINK O3G ANP X 381 MN MN X 383 1555 1555 1.75 CISPEP 1 ILE X 251 SER X 252 0 0.81 SITE 1 AC1 4 LYS X 174 ASN X 177 ASP X 190 ANP X 381 SITE 1 AC2 17 ASN X 35 ASN X 40 ILE X 42 ALA X 53 SITE 2 AC2 17 LYS X 55 LEU X 101 GLU X 118 TYR X 119 SITE 3 AC2 17 MET X 120 ASP X 123 LYS X 174 SER X 176 SITE 4 AC2 17 ASN X 177 LEU X 179 ASP X 190 MN X 383 SITE 5 AC2 17 HOH X 401 CRYST1 72.554 81.795 138.273 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013783 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007232 0.00000