HEADER BLOOD CLOTTING 23-APR-07 2PMM OBSLTE 22-MAY-07 2PMM 2PUQ TITLE CRYSTAL STRUCTURE OF ACTIVE SITE INHIBITED COAGULATION TITLE 2 FACTOR VIIA IN COMPLEX WITH SOLUBLE TISSUE FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR VII; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: LIGHT CHAIN; COMPND 5 SYNONYM: SERUM PROTHROMBIN CONVERSION ACCELERATOR; SPCA; COMPND 6 PROCONVERTIN; EPTACOG ALFA; COMPND 7 EC: 3.4.21.21; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: COAGULATION FACTOR VII; COMPND 11 CHAIN: H; COMPND 12 FRAGMENT: HEAVY CHAIN; COMPND 13 SYNONYM: SERUM PROTHROMBIN CONVERSION ACCELERATOR; SPCA; COMPND 14 PROCONVERTIN; EPTACOG ALFA; COMPND 15 EC: 3.4.21.21; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: TISSUE FACTOR; COMPND 19 CHAIN: T; COMPND 20 SYNONYM: SOLUBLE TISSUE FACTOR; TF; COAGULATION FACTOR COMPND 21 III; THROMBOPLASTIN; CD142 ANTIGEN; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 4; COMPND 24 MOLECULE: CHLOROMETHYL KETONE D-TRP-TYR-THR-ARG SUBSTRATE COMPND 25 MIMICKING INHIBITOR; COMPND 26 CHAIN: I; COMPND 27 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: F7; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: CHO-K1; SOURCE 8 EXPRESSION_SYSTEM_CELL: HAMPSTER OVARY CELLS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEE-ACEDELTA36NJ; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 GENE: F7; SOURCE 15 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: CHO-K1; SOURCE 18 EXPRESSION_SYSTEM_CELL: HAMPSTER OVARY CELLS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PEE-ACEDELTA36NJ; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 GENE: ACE; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 26 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 27 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 28 MOL_ID: 4; SOURCE 29 SYNTHETIC: YES KEYWDS ACTIVE SITE INHIBITOR; SUBSTRATE PROFILE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.BJELKE,H.B.RASMUSSEN REVDAT 2 22-MAY-07 2PMM 1 OBSLTE REVDAT 1 08-MAY-07 2PMM 0 JRNL AUTH K.S.LARSEN,H.OSTERGAARD,J.R.BJELKE,O.H.OLSEN, JRNL AUTH 2 H.B.RASMUSSEN,L.CHRISTENSEN,B.B.KRAGELUND, JRNL AUTH 3 H.R.STENNICKE JRNL TITL ENGINEERING THE SUBSTRATE AND INHIBITOR JRNL TITL 2 SPECIFICITIES OF HUMAN COAGULATION FACTOR VIIA JRNL REF TO BE PUBLISHED 2007 JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 52510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2626 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3617 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 4303 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.14000 REMARK 3 B22 (A**2) : -1.45000 REMARK 3 B33 (A**2) : 4.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.69000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.160 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4221 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5754 ; 2.495 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 535 ;15.640 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;32.609 ;24.205 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 630 ;17.341 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.084 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 652 ; 0.194 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3201 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1829 ; 0.289 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2870 ; 0.338 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 404 ; 0.262 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.055 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.263 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.208 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2730 ; 2.759 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4307 ; 3.894 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1710 ; 2.720 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1447 ; 3.719 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 0 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 0 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2PMM COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PRAGUE ON 25-APR-2007. REMARK 100 THE RCSB ID CODE IS RCSB042544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-2005 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : OTHER REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52511 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 39.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1DAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, PH 5.6, 16.0 REMARK 280 % (W/V) PEG 4000, 12 % (V/V) 1-PROPANOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,1/2+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.41350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, T, I, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP T 158 REMARK 465 LYS T 159 REMARK 465 SER T 160 REMARK 465 SER T 161 REMARK 465 SER T 162 REMARK 465 SER T 163 REMARK 465 GLY T 164 REMARK 465 LYS T 165 REMARK 465 ASP T 180 REMARK 465 LYS T 181 REMARK 465 GLY T 182 REMARK 465 GLU T 183 REMARK 465 ASN T 184 REMARK 465 TYR T 185 REMARK 465 DTR I 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER L 53 CB OG REMARK 470 LYS L 62 CG CD CE NZ REMARK 470 GLN L 66 CD OE1 NE2 REMARK 470 LEU L 73 CG CD1 CD2 REMARK 470 LYS H 197 CE NZ REMARK 470 LYS H 199 CB CG CD CE NZ REMARK 470 ASN H 200 CB CG OD1 ND2 REMARK 470 ARG H 202 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG H 224 CG CD NE CZ NH1 NH2 REMARK 470 HIS H 249 CE1 NE2 REMARK 470 LEU H 288 CD1 CD2 REMARK 470 ARG H 290 CG CD NE CZ NH1 NH2 REMARK 470 LYS H 316 CG CD CE NZ REMARK 470 ASP H 319 CB CG OD1 OD2 REMARK 470 LYS H 341 CD CE NZ REMARK 470 GLU H 385 CD OE1 OE2 REMARK 470 LYS H 389 CG CD CE NZ REMARK 470 GLU H 394 CB CG CD OE1 OE2 REMARK 470 PHE H 405 CB REMARK 470 THR T 21 O REMARK 470 LYS T 41 CG CD CE NZ REMARK 470 PRO T 92 O REMARK 470 PHE T 116 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU T 117 CB CG CD OE1 OE2 REMARK 470 GLN T 118 CB CG CD OE1 NE2 REMARK 470 VAL T 119 CB CG1 CG2 REMARK 470 LYS T 122 CG CD CE NZ REMARK 470 VAL T 123 CG2 REMARK 470 ASP T 129 CB CG OD1 OD2 REMARK 470 GLU T 130 CG CD OE1 OE2 REMARK 470 ARG T 136 CG CD NE CZ NH1 NH2 REMARK 470 ASN T 138 CB CG OD1 ND2 REMARK 470 LYS T 149 CB CG CD CE NZ REMARK 470 LYS T 166 CD CE NZ REMARK 470 GLU T 174 CG CD OE1 OE2 REMARK 470 ARG T 200 CG CD NE CZ NH1 NH2 REMARK 470 LYS T 201 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 OG SER H 344 C ARG I 3 1.38 REMARK 500 C ARG I 3 C CH2 I 4 1.62 REMARK 500 O VAL H 158 O HOH 201 1.80 REMARK 500 OG SER H 344 O ARG I 3 1.88 REMARK 500 NH2 ARG H 353 O HOH 164 1.96 REMARK 500 O GLN L 49 O6 GLC G 52 1.99 REMARK 500 OG SER L 52 O5 GLC G 52 2.00 REMARK 500 OG SER L 60 O5 FUC G 60 2.03 REMARK 500 O HOH 22 O HOH 111 2.03 REMARK 500 OG SER H 344 C CH2 I 4 2.07 REMARK 500 OG1 THR T 86 O HOH 118 2.07 REMARK 500 OG SER T 88 O HOH 262 2.09 REMARK 500 CB SER H 344 O ARG I 3 2.11 REMARK 500 N GLN L 64 O SER L 67 2.12 REMARK 500 OE1 GLN H 176 O HOH 25 2.17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL H 302 CA VAL H 302 CB 0.247 REMARK 500 ALA H 330 N ALA H 330 CA 0.256 REMARK 500 VAL H 362 CB VAL H 362 CG2 0.287 REMARK 500 TYR H 377 CD1 TYR H 377 CE1 0.232 REMARK 500 LYS T 15 CE LYS T 15 NZ -0.364 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU H 204 N - CA - C ANGL. DEV. = 15.8 DEGREES REMARK 500 HIS H 216 N - CA - C ANGL. DEV. =-15.1 DEGREES REMARK 500 ARG H 290 C - N - CA ANGL. DEV. =-17.8 DEGREES REMARK 500 PRO H 303 C - N - CD ANGL. DEV. =-16.1 DEGREES REMARK 500 ALA H 330 N - CA - C ANGL. DEV. =-23.4 DEGREES REMARK 500 ALA T 80 N - CA - C ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU H 215 178.88 129.43 REMARK 500 ALA T 80 -105.83 49.38 REMARK 500 VAL T 83 48.25 117.64 REMARK 500 SER T 115 137.95 120.03 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP L 86 ASP L 87 -148.91 REMARK 500 ASN H 203 LEU H 204 103.03 REMARK 500 GLU H 215 HIS H 216 -114.47 REMARK 500 GLY H 218 ASP H 219 -137.58 REMARK 500 ASP H 256 HIS H 257 -136.13 REMARK 500 TRP H 364 GLY H 365 -120.37 REMARK 500 PRO T 79 ALA T 80 143.30 REMARK 500 ASN T 82 VAL T 83 -81.29 DBREF 2PMM L 49 142 UNP P08709 FA7_HUMAN 109 202 DBREF 2PMM H 153 406 UNP P08709 FA7_HUMAN 213 466 DBREF 2PMM T 6 209 UNP P13726 TF_HUMAN 38 241 SEQRES 1 L 94 GLN CYS ALA SER SER PRO CYS GLN ASN GLY GLY SER CYS SEQRES 2 L 94 LYS ASP GLN LEU GLN SER TYR ILE CYS PHE CYS LEU PRO SEQRES 3 L 94 ALA PHE GLU GLY ARG ASN CYS GLU THR HIS LYS ASP ASP SEQRES 4 L 94 GLN LEU ILE CYS VAL ASN GLU ASN GLY GLY CYS GLU GLN SEQRES 5 L 94 TYR CYS SER ASP HIS THR GLY THR LYS ARG SER CYS ARG SEQRES 6 L 94 CYS HIS GLU GLY TYR SER LEU LEU ALA ASP GLY VAL SER SEQRES 7 L 94 CYS THR PRO THR VAL GLU TYR PRO CYS GLY LYS ILE PRO SEQRES 8 L 94 ILE LEU GLU SEQRES 1 H 254 ILE VAL GLY GLY LYS VAL CYS PRO LYS GLY GLU CYS PRO SEQRES 2 H 254 TRP GLN VAL LEU LEU LEU VAL ASN GLY ALA GLN LEU CYS SEQRES 3 H 254 GLY GLY THR LEU ILE ASN THR ILE TRP VAL VAL SER ALA SEQRES 4 H 254 ALA HIS CYS PHE ASP LYS ILE LYS ASN TRP ARG ASN LEU SEQRES 5 H 254 ILE ALA VAL LEU GLY GLU HIS ASP LEU SER GLU HIS ASP SEQRES 6 H 254 GLY ASP GLU GLN SER ARG ARG VAL ALA GLN VAL ILE ILE SEQRES 7 H 254 PRO SER THR TYR VAL PRO GLY THR THR ASN HIS ASP ILE SEQRES 8 H 254 ALA LEU LEU ARG LEU HIS GLN PRO VAL VAL LEU THR ASP SEQRES 9 H 254 HIS VAL VAL PRO LEU CYS LEU PRO GLU ARG THR PHE SER SEQRES 10 H 254 GLU ARG THR LEU ALA PHE VAL ARG PHE SER LEU VAL SER SEQRES 11 H 254 GLY TRP GLY GLN LEU LEU ASP ARG GLY ALA THR ALA LEU SEQRES 12 H 254 GLU LEU MET VAL LEU ASN VAL PRO ARG LEU MET THR GLN SEQRES 13 H 254 ASP CYS LEU GLN GLN SER ARG LYS VAL GLY ASP SER PRO SEQRES 14 H 254 ASN ILE THR GLU TYR MET PHE CYS ALA GLY TYR SER ASP SEQRES 15 H 254 GLY SER LYS ASP SER CYS LYS GLY ASP SER GLY GLY PRO SEQRES 16 H 254 HIS ALA THR HIS TYR ARG GLY THR TRP TYR LEU THR GLY SEQRES 17 H 254 ILE VAL SER TRP GLY GLN GLY CYS ALA THR VAL GLY HIS SEQRES 18 H 254 PHE GLY VAL TYR THR ARG VAL SER GLN TYR ILE GLU TRP SEQRES 19 H 254 LEU GLN LYS LEU MET ARG SER GLU PRO ARG PRO GLY VAL SEQRES 20 H 254 LEU LEU ARG ALA PRO PHE PRO SEQRES 1 T 204 THR VAL ALA ALA TYR ASN LEU THR TRP LYS SER THR ASN SEQRES 2 T 204 PHE LYS THR ILE LEU GLU TRP GLU PRO LYS PRO VAL ASN SEQRES 3 T 204 GLN VAL TYR THR VAL GLN ILE SER THR LYS SER GLY ASP SEQRES 4 T 204 TRP LYS SER LYS CYS PHE TYR THR THR ASP THR GLU CYS SEQRES 5 T 204 ASP LEU THR ASP GLU ILE VAL LYS ASP VAL LYS GLN THR SEQRES 6 T 204 TYR LEU ALA ARG VAL PHE SER TYR PRO ALA GLY ASN VAL SEQRES 7 T 204 GLU SER THR GLY SER ALA GLY GLU PRO LEU TYR GLU ASN SEQRES 8 T 204 SER PRO GLU PHE THR PRO TYR LEU GLU THR ASN LEU GLY SEQRES 9 T 204 GLN PRO THR ILE GLN SER PHE GLU GLN VAL GLY THR LYS SEQRES 10 T 204 VAL ASN VAL THR VAL GLU ASP GLU ARG THR LEU VAL ARG SEQRES 11 T 204 ARG ASN ASN THR PHE LEU SER LEU ARG ASP VAL PHE GLY SEQRES 12 T 204 LYS ASP LEU ILE TYR THR LEU TYR TYR TRP LYS SER SER SEQRES 13 T 204 SER SER GLY LYS LYS THR ALA LYS THR ASN THR ASN GLU SEQRES 14 T 204 PHE LEU ILE ASP VAL ASP LYS GLY GLU ASN TYR CYS PHE SEQRES 15 T 204 SER VAL GLN ALA VAL ILE PRO SER ARG THR VAL ASN ARG SEQRES 16 T 204 LYS SER THR ASP SER PRO VAL GLU CYS SEQRES 1 I 4 DTR TYR THR ARG MODRES 2PMM SER L 60 SER GLYCOSYLATION SITE MODRES 2PMM SER L 52 SER GLYCOSYLATION SITE HET GLC G 52 11 HET FUC G 60 10 HET CA 1001 1 HET CH2 I 4 1 HETNAM GLC GLUCOSE HETNAM FUC ALPHA-L-FUCOSE HETNAM CA CALCIUM ION HETNAM CH2 METHYLENE GROUP FORMUL 5 GLC C6 H12 O6 FORMUL 6 FUC C6 H12 O5 FORMUL 7 CA CA 2+ FORMUL 8 CH2 C H2 FORMUL 9 HOH *187(H2 O) HELIX 1 1 GLN L 49 SER L 53 5 5 HELIX 2 2 ASP L 86 GLN L 88 5 3 HELIX 3 3 ASN L 93 CYS L 98 5 6 HELIX 4 4 ALA H 191 ASP H 196 5 6 HELIX 5 5 ASN H 200 ARG H 202 5 3 HELIX 6 6 GLU H 265 THR H 272 1 8 HELIX 7 7 LEU H 273 VAL H 276 5 4 HELIX 8 8 MET H 306 SER H 314 1 9 HELIX 9 9 TYR H 383 SER H 393 1 11 HELIX 10 10 LEU T 59 VAL T 64 1 6 HELIX 11 11 THR T 101 THR T 106 1 6 HELIX 12 12 LEU T 143 GLY T 148 1 6 HELIX 13 13 LYS T 149 LEU T 151 5 3 SHEET 1 A 2 SER L 60 CYS L 61 0 SHEET 2 A 2 CYS L 70 PHE L 71 -1 O PHE L 71 N SER L 60 SHEET 1 B 2 PHE L 76 GLU L 77 0 SHEET 2 B 2 THR L 83 HIS L 84 -1 O THR L 83 N GLU L 77 SHEET 1 C 2 TYR L 101 HIS L 105 0 SHEET 2 C 2 THR L 108 ARG L 113 -1 O SER L 111 N SER L 103 SHEET 1 D 2 TYR L 118 LEU L 120 0 SHEET 2 D 2 CYS L 127 PRO L 129 -1 O THR L 128 N SER L 119 SHEET 1 E 8 LYS H 157 VAL H 158 0 SHEET 2 E 8 MET H 298 LEU H 305 -1 O VAL H 299 N LYS H 157 SHEET 3 E 8 MET H 327 ALA H 330 -1 O CYS H 329 N LEU H 305 SHEET 4 E 8 GLY H 375 ARG H 379 -1 O TYR H 377 N PHE H 328 SHEET 5 E 8 THR H 355 TRP H 364 -1 N ILE H 361 O THR H 378 SHEET 6 E 8 PRO H 347 TYR H 352 -1 N HIS H 348 O GLY H 360 SHEET 7 E 8 PHE H 278 GLY H 283 -1 N LEU H 280 O ALA H 349 SHEET 8 E 8 MET H 298 LEU H 305 -1 O MET H 298 N GLY H 283 SHEET 1 F 8 LEU H 400 ALA H 403 0 SHEET 2 F 8 GLN H 221 PRO H 231 1 N VAL H 228 O LEU H 401 SHEET 3 F 8 ALA H 244 LEU H 248 -1 O LEU H 245 N ILE H 229 SHEET 4 F 8 TRP H 187 SER H 190 -1 N VAL H 188 O LEU H 246 SHEET 5 F 8 ALA H 175 ASN H 184 -1 N THR H 181 O VAL H 189 SHEET 6 F 8 GLN H 167 VAL H 172 -1 N VAL H 172 O ALA H 175 SHEET 7 F 8 LEU H 204 LEU H 208 -1 O VAL H 207 N LEU H 169 SHEET 8 F 8 GLN H 221 PRO H 231 -1 O ARG H 223 N ALA H 206 SHEET 1 G 3 TYR T 10 TRP T 14 0 SHEET 2 G 3 LEU T 23 GLU T 26 -1 O GLU T 26 N TYR T 10 SHEET 3 G 3 GLU T 56 CYS T 57 -1 O CYS T 57 N LEU T 23 SHEET 1 H 4 LYS T 46 THR T 52 0 SHEET 2 H 4 GLN T 32 THR T 40 -1 N ILE T 38 O LYS T 46 SHEET 3 H 4 TYR T 71 PRO T 79 -1 O PHE T 76 N THR T 35 SHEET 4 H 4 TYR T 94 ASN T 96 -1 O GLU T 95 N VAL T 75 SHEET 1 I 2 ARG T 131 ARG T 136 0 SHEET 2 I 2 THR T 139 SER T 142 -1 O LEU T 141 N THR T 132 SHEET 1 J 2 ILE T 152 TYR T 153 0 SHEET 2 J 2 ALA T 191 VAL T 192 -1 O VAL T 192 N ILE T 152 SSBOND 1 CYS L 50 CYS L 61 SSBOND 2 CYS L 55 CYS L 70 SSBOND 3 CYS L 72 CYS L 81 SSBOND 4 CYS L 91 CYS L 102 SSBOND 5 CYS L 98 CYS L 112 SSBOND 6 CYS L 114 CYS L 127 SSBOND 7 CYS L 135 CYS H 262 SSBOND 8 CYS H 159 CYS H 164 SSBOND 9 CYS H 178 CYS H 194 SSBOND 10 CYS H 310 CYS H 329 SSBOND 11 CYS H 340 CYS H 368 SSBOND 12 CYS T 49 CYS T 57 SSBOND 13 CYS T 186 CYS T 209 LINK C CH2 I 4 NE2 HIS H 193 LINK OG SER L 60 C1 FUC G 60 LINK OG SER L 52 C1 GLC G 52 LINK OE1 GLU H 210 CA CA 1001 LINK O ASP H 212 CA CA 1001 LINK O GLU H 215 CA CA 1001 LINK OE2 GLU H 220 CA CA 1001 LINK CA CA 1001 O HOH 128 LINK CA CA 1001 O HOH 189 CISPEP 1 PHE H 405 PRO H 406 0 -5.07 CISPEP 2 GLU T 26 PRO T 27 0 -0.13 CISPEP 3 ALA T 80 GLY T 81 0 1.91 CISPEP 4 GLU T 84 SER T 85 0 -0.82 CISPEP 5 GLY T 87 SER T 88 0 -6.82 CRYST1 78.312 68.827 78.732 90.00 90.74 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012769 0.000000 0.000164 0.00000 SCALE2 0.000000 0.014529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012702 0.00000