HEADER TRANSCRIPTION 23-APR-07 2PN0 TITLE PROKARYOTIC TRANSCRIPTION ELONGATION FACTOR GREA/GREB FROM TITLE 2 NITROSOMONAS EUROPAEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROKARYOTIC TRANSCRIPTION ELONGATION FACTOR COMPND 3 GREA/GREB; COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA; SOURCE 3 ORGANISM_TAXID: 915; SOURCE 4 STRAIN: IFO 14298; SOURCE 5 ATCC: 19718; SOURCE 6 GENE: RNK, NE2130; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B MODIFIED KEYWDS TRANSCRIPTION ELONGATION FACTOR, GREA/GREB, STRUCTURAL KEYWDS 2 GENOMICS, APC6349, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,E.EVDOKIMOVA,O.KAGAN,A.SAVCHENKO,A.EDWARDS, AUTHOR 2 A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 24-FEB-09 2PN0 1 VERSN REVDAT 1 22-MAY-07 2PN0 0 JRNL AUTH J.OSIPIUK,E.EVDOKIMOVA,O.KAGAN,A.SAVCHENKO, JRNL AUTH 2 A.EDWARDS,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PROKARYOTIC TRANSCRIPTION JRNL TITL 2 ELONGATION FACTOR GREA/GREB FROM NITROSOMONAS JRNL TITL 3 EUROPAEA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 55435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2950 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3680 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 209 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3983 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 571 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.823 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4078 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5607 ; 1.580 ; 2.013 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 556 ; 6.062 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;35.319 ;24.831 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 752 ;13.179 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;17.254 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 670 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3070 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2113 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2874 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 453 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 97 ; 0.256 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2659 ; 1.049 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4226 ; 1.508 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1578 ; 2.395 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1344 ; 3.756 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2PN0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-07. REMARK 100 THE RCSB ID CODE IS RCSB042557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58450 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 39.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.60900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, SOLVE/RESOLVE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M CALCIUM CHLORIDE, 0.1 M NA REMARK 280 ACETATE, 20% PEG3350, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.69350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.69350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.31400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.41900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.31400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.41900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.69350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.31400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.41900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.69350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.31400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.41900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 AUTHORS STATE THAT THE ASSEMBLY OF THE BIOLOGICAL UNIT REMARK 300 THAT IS SHOWN IN REMARK 350 IS PUTATIVE AT THE TIME OF REMARK 300 DEPOSITION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 ILE A 3 REMARK 465 GLN A 128 REMARK 465 PRO A 129 REMARK 465 GLU A 130 REMARK 465 ARG A 131 REMARK 465 SER A 132 REMARK 465 GLY A 133 REMARK 465 GLU A 134 REMARK 465 TYR A 135 REMARK 465 TYR A 136 REMARK 465 ARG A 137 REMARK 465 GLY A 138 REMARK 465 SER A 139 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 ILE B 3 REMARK 465 GLN B 128 REMARK 465 PRO B 129 REMARK 465 GLU B 130 REMARK 465 ARG B 131 REMARK 465 SER B 132 REMARK 465 GLY B 133 REMARK 465 GLU B 134 REMARK 465 TYR B 135 REMARK 465 TYR B 136 REMARK 465 ARG B 137 REMARK 465 GLY B 138 REMARK 465 SER B 139 REMARK 465 GLY C -1 REMARK 465 HIS C 0 REMARK 465 MSE C 1 REMARK 465 SER C 2 REMARK 465 ILE C 3 REMARK 465 LYS C 4 REMARK 465 PRO C 5 REMARK 465 GLN C 128 REMARK 465 PRO C 129 REMARK 465 GLU C 130 REMARK 465 ARG C 131 REMARK 465 SER C 132 REMARK 465 GLY C 133 REMARK 465 GLU C 134 REMARK 465 TYR C 135 REMARK 465 TYR C 136 REMARK 465 ARG C 137 REMARK 465 GLY C 138 REMARK 465 SER C 139 REMARK 465 GLY D -1 REMARK 465 HIS D 0 REMARK 465 MSE D 1 REMARK 465 SER D 2 REMARK 465 ILE D 3 REMARK 465 GLN D 26 REMARK 465 ASN D 27 REMARK 465 ALA D 28 REMARK 465 GLN D 128 REMARK 465 PRO D 129 REMARK 465 GLU D 130 REMARK 465 ARG D 131 REMARK 465 SER D 132 REMARK 465 GLY D 133 REMARK 465 GLU D 134 REMARK 465 TYR D 135 REMARK 465 TYR D 136 REMARK 465 ARG D 137 REMARK 465 GLY D 138 REMARK 465 SER D 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 182 O HOH C 275 2.01 REMARK 500 NH1 ARG A 16 OE1 GLU B 18 2.10 REMARK 500 O HOH B 274 O HOH C 204 2.11 REMARK 500 O HOH D 202 O HOH D 252 2.14 REMARK 500 CD1 LEU D 12 O HOH D 266 2.17 REMARK 500 O HOH B 252 O HOH C 166 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 24 36.33 -89.33 REMARK 500 ALA A 69 16.58 59.69 REMARK 500 VAL A 95 -56.92 78.40 REMARK 500 VAL B 95 -59.39 78.58 REMARK 500 VAL C 95 -54.08 76.02 REMARK 500 VAL D 95 -56.29 78.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6349 RELATED DB: TARGETDB REMARK 900 RELATED ID: 2EUL RELATED DB: PDB REMARK 900 STRUCTURE OF THE TRANSCRIPTION FACTOR GFH1 DBREF 2PN0 A 1 137 UNP Q82T10 Q82T10_NITEU 1 137 DBREF 2PN0 B 1 137 UNP Q82T10 Q82T10_NITEU 1 137 DBREF 2PN0 C 1 137 UNP Q82T10 Q82T10_NITEU 1 137 DBREF 2PN0 D 1 137 UNP Q82T10 Q82T10_NITEU 1 137 SEQADV 2PN0 GLY A -1 UNP Q82T10 CLONING ARTIFACT SEQADV 2PN0 HIS A 0 UNP Q82T10 CLONING ARTIFACT SEQADV 2PN0 MSE A 1 UNP Q82T10 MET 1 MODIFIED RESIDUE SEQADV 2PN0 MSE A 8 UNP Q82T10 MET 8 MODIFIED RESIDUE SEQADV 2PN0 MSE A 57 UNP Q82T10 MET 57 MODIFIED RESIDUE SEQADV 2PN0 OCS A 73 UNP Q82T10 CYS 73 MODIFIED RESIDUE SEQADV 2PN0 GLY A 138 UNP Q82T10 CLONING ARTIFACT SEQADV 2PN0 SER A 139 UNP Q82T10 CLONING ARTIFACT SEQADV 2PN0 GLY B -1 UNP Q82T10 CLONING ARTIFACT SEQADV 2PN0 HIS B 0 UNP Q82T10 CLONING ARTIFACT SEQADV 2PN0 MSE B 1 UNP Q82T10 MET 1 MODIFIED RESIDUE SEQADV 2PN0 MSE B 8 UNP Q82T10 MET 8 MODIFIED RESIDUE SEQADV 2PN0 MSE B 57 UNP Q82T10 MET 57 MODIFIED RESIDUE SEQADV 2PN0 OCS B 73 UNP Q82T10 CYS 73 MODIFIED RESIDUE SEQADV 2PN0 GLY B 138 UNP Q82T10 CLONING ARTIFACT SEQADV 2PN0 SER B 139 UNP Q82T10 CLONING ARTIFACT SEQADV 2PN0 GLY C -1 UNP Q82T10 CLONING ARTIFACT SEQADV 2PN0 HIS C 0 UNP Q82T10 CLONING ARTIFACT SEQADV 2PN0 MSE C 1 UNP Q82T10 MET 1 MODIFIED RESIDUE SEQADV 2PN0 MSE C 8 UNP Q82T10 MET 8 MODIFIED RESIDUE SEQADV 2PN0 MSE C 57 UNP Q82T10 MET 57 MODIFIED RESIDUE SEQADV 2PN0 OCS C 73 UNP Q82T10 CYS 73 MODIFIED RESIDUE SEQADV 2PN0 GLY C 138 UNP Q82T10 CLONING ARTIFACT SEQADV 2PN0 SER C 139 UNP Q82T10 CLONING ARTIFACT SEQADV 2PN0 GLY D -1 UNP Q82T10 CLONING ARTIFACT SEQADV 2PN0 HIS D 0 UNP Q82T10 CLONING ARTIFACT SEQADV 2PN0 MSE D 1 UNP Q82T10 MET 1 MODIFIED RESIDUE SEQADV 2PN0 MSE D 8 UNP Q82T10 MET 8 MODIFIED RESIDUE SEQADV 2PN0 MSE D 57 UNP Q82T10 MET 57 MODIFIED RESIDUE SEQADV 2PN0 OCS D 73 UNP Q82T10 CYS 73 MODIFIED RESIDUE SEQADV 2PN0 GLY D 138 UNP Q82T10 CLONING ARTIFACT SEQADV 2PN0 SER D 139 UNP Q82T10 CLONING ARTIFACT SEQRES 1 A 141 GLY HIS MSE SER ILE LYS PRO LYS ILE MSE ILE SER SER SEQRES 2 A 141 LEU ASP ALA GLU ARG LEU GLU ILE LEU LEU GLU THR LEU SEQRES 3 A 141 SER GLN ASN ALA PHE PRO GLY ARG ASP ASP LEU GLU ALA SEQRES 4 A 141 GLU LEU ALA ARG ALA GLU VAL VAL ASP PRO GLU GLU ILE SEQRES 5 A 141 PRO PRO THR VAL VAL THR MSE ASN SER THR VAL ARG PHE SEQRES 6 A 141 ARG VAL GLU SER SER ALA GLU GLU PHE OCS LEU THR LEU SEQRES 7 A 141 VAL TYR PRO LYS ASP VAL ASP THR SER GLY GLU LYS ILE SEQRES 8 A 141 SER ILE LEU ALA PRO VAL GLY SER ALA LEU LEU GLY LEU SEQRES 9 A 141 ALA GLN GLY ASP GLU ILE GLU TRP PRO LYS PRO GLY GLY SEQRES 10 A 141 GLY VAL LEU ARG VAL ARG ILE VAL GLU VAL THR TYR GLN SEQRES 11 A 141 PRO GLU ARG SER GLY GLU TYR TYR ARG GLY SER SEQRES 1 B 141 GLY HIS MSE SER ILE LYS PRO LYS ILE MSE ILE SER SER SEQRES 2 B 141 LEU ASP ALA GLU ARG LEU GLU ILE LEU LEU GLU THR LEU SEQRES 3 B 141 SER GLN ASN ALA PHE PRO GLY ARG ASP ASP LEU GLU ALA SEQRES 4 B 141 GLU LEU ALA ARG ALA GLU VAL VAL ASP PRO GLU GLU ILE SEQRES 5 B 141 PRO PRO THR VAL VAL THR MSE ASN SER THR VAL ARG PHE SEQRES 6 B 141 ARG VAL GLU SER SER ALA GLU GLU PHE OCS LEU THR LEU SEQRES 7 B 141 VAL TYR PRO LYS ASP VAL ASP THR SER GLY GLU LYS ILE SEQRES 8 B 141 SER ILE LEU ALA PRO VAL GLY SER ALA LEU LEU GLY LEU SEQRES 9 B 141 ALA GLN GLY ASP GLU ILE GLU TRP PRO LYS PRO GLY GLY SEQRES 10 B 141 GLY VAL LEU ARG VAL ARG ILE VAL GLU VAL THR TYR GLN SEQRES 11 B 141 PRO GLU ARG SER GLY GLU TYR TYR ARG GLY SER SEQRES 1 C 141 GLY HIS MSE SER ILE LYS PRO LYS ILE MSE ILE SER SER SEQRES 2 C 141 LEU ASP ALA GLU ARG LEU GLU ILE LEU LEU GLU THR LEU SEQRES 3 C 141 SER GLN ASN ALA PHE PRO GLY ARG ASP ASP LEU GLU ALA SEQRES 4 C 141 GLU LEU ALA ARG ALA GLU VAL VAL ASP PRO GLU GLU ILE SEQRES 5 C 141 PRO PRO THR VAL VAL THR MSE ASN SER THR VAL ARG PHE SEQRES 6 C 141 ARG VAL GLU SER SER ALA GLU GLU PHE OCS LEU THR LEU SEQRES 7 C 141 VAL TYR PRO LYS ASP VAL ASP THR SER GLY GLU LYS ILE SEQRES 8 C 141 SER ILE LEU ALA PRO VAL GLY SER ALA LEU LEU GLY LEU SEQRES 9 C 141 ALA GLN GLY ASP GLU ILE GLU TRP PRO LYS PRO GLY GLY SEQRES 10 C 141 GLY VAL LEU ARG VAL ARG ILE VAL GLU VAL THR TYR GLN SEQRES 11 C 141 PRO GLU ARG SER GLY GLU TYR TYR ARG GLY SER SEQRES 1 D 141 GLY HIS MSE SER ILE LYS PRO LYS ILE MSE ILE SER SER SEQRES 2 D 141 LEU ASP ALA GLU ARG LEU GLU ILE LEU LEU GLU THR LEU SEQRES 3 D 141 SER GLN ASN ALA PHE PRO GLY ARG ASP ASP LEU GLU ALA SEQRES 4 D 141 GLU LEU ALA ARG ALA GLU VAL VAL ASP PRO GLU GLU ILE SEQRES 5 D 141 PRO PRO THR VAL VAL THR MSE ASN SER THR VAL ARG PHE SEQRES 6 D 141 ARG VAL GLU SER SER ALA GLU GLU PHE OCS LEU THR LEU SEQRES 7 D 141 VAL TYR PRO LYS ASP VAL ASP THR SER GLY GLU LYS ILE SEQRES 8 D 141 SER ILE LEU ALA PRO VAL GLY SER ALA LEU LEU GLY LEU SEQRES 9 D 141 ALA GLN GLY ASP GLU ILE GLU TRP PRO LYS PRO GLY GLY SEQRES 10 D 141 GLY VAL LEU ARG VAL ARG ILE VAL GLU VAL THR TYR GLN SEQRES 11 D 141 PRO GLU ARG SER GLY GLU TYR TYR ARG GLY SER MODRES 2PN0 MSE A 8 MET SELENOMETHIONINE MODRES 2PN0 MSE A 57 MET SELENOMETHIONINE MODRES 2PN0 OCS A 73 CYS CYSTEINESULFONIC ACID MODRES 2PN0 MSE B 8 MET SELENOMETHIONINE MODRES 2PN0 MSE B 57 MET SELENOMETHIONINE MODRES 2PN0 OCS B 73 CYS CYSTEINESULFONIC ACID MODRES 2PN0 MSE C 8 MET SELENOMETHIONINE MODRES 2PN0 MSE C 57 MET SELENOMETHIONINE MODRES 2PN0 OCS C 73 CYS CYSTEINESULFONIC ACID MODRES 2PN0 MSE D 8 MET SELENOMETHIONINE MODRES 2PN0 MSE D 57 MET SELENOMETHIONINE MODRES 2PN0 OCS D 73 CYS CYSTEINESULFONIC ACID HET MSE A 8 8 HET MSE A 57 8 HET OCS A 73 9 HET MSE B 8 13 HET MSE B 57 8 HET OCS B 73 9 HET MSE C 8 8 HET MSE C 57 8 HET OCS C 73 9 HET MSE D 8 13 HET MSE D 57 8 HET OCS D 73 9 HETNAM MSE SELENOMETHIONINE HETNAM OCS CYSTEINESULFONIC ACID FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 1 OCS 4(C3 H7 N O5 S) FORMUL 5 HOH *567(H2 O) HELIX 1 1 SER A 11 LEU A 24 1 14 HELIX 2 2 GLY A 31 ARG A 41 1 11 HELIX 3 3 ASP A 46 ILE A 50 5 5 HELIX 4 4 TYR A 78 VAL A 82 5 5 HELIX 5 5 VAL A 95 LEU A 100 1 6 HELIX 6 6 SER B 11 GLU B 22 1 12 HELIX 7 7 GLY B 31 ALA B 42 1 12 HELIX 8 8 ASP B 46 ILE B 50 5 5 HELIX 9 9 TYR B 78 VAL B 82 5 5 HELIX 10 10 VAL B 95 LEU B 100 1 6 HELIX 11 11 SER C 11 LEU C 24 1 14 HELIX 12 12 GLY C 31 ALA C 42 1 12 HELIX 13 13 ASP C 46 ILE C 50 5 5 HELIX 14 14 TYR C 78 VAL C 82 5 5 HELIX 15 15 VAL C 95 LEU C 100 1 6 HELIX 16 16 SER D 11 THR D 23 1 13 HELIX 17 17 GLY D 31 ARG D 41 1 11 HELIX 18 18 ASP D 46 ILE D 50 5 5 HELIX 19 19 TYR D 78 VAL D 82 5 5 HELIX 20 20 VAL D 95 LEU D 100 1 6 SHEET 1 A 2 MSE A 8 SER A 10 0 SHEET 2 A 2 GLU A 43 VAL A 45 1 O VAL A 45 N ILE A 9 SHEET 1 B 5 LYS A 88 SER A 90 0 SHEET 2 B 5 GLU A 71 VAL A 77 1 N THR A 75 O ILE A 89 SHEET 3 B 5 THR A 60 VAL A 65 -1 N PHE A 63 O PHE A 72 SHEET 4 B 5 VAL A 117 THR A 126 -1 O THR A 126 N THR A 60 SHEET 5 B 5 GLU A 107 PRO A 111 -1 N TRP A 110 O LEU A 118 SHEET 1 C 2 MSE B 8 SER B 10 0 SHEET 2 C 2 GLU B 43 VAL B 45 1 O VAL B 45 N ILE B 9 SHEET 1 D 5 LYS B 88 SER B 90 0 SHEET 2 D 5 GLU B 71 VAL B 77 1 N THR B 75 O ILE B 89 SHEET 3 D 5 THR B 60 VAL B 65 -1 N VAL B 61 O LEU B 74 SHEET 4 D 5 VAL B 117 THR B 126 -1 O THR B 126 N THR B 60 SHEET 5 D 5 GLU B 107 PRO B 111 -1 N TRP B 110 O LEU B 118 SHEET 1 E 2 MSE C 8 SER C 10 0 SHEET 2 E 2 GLU C 43 VAL C 45 1 O VAL C 45 N ILE C 9 SHEET 1 F 5 LYS C 88 SER C 90 0 SHEET 2 F 5 GLU C 71 VAL C 77 1 N VAL C 77 O ILE C 89 SHEET 3 F 5 THR C 60 VAL C 65 -1 N PHE C 63 O PHE C 72 SHEET 4 F 5 VAL C 117 THR C 126 -1 O THR C 126 N THR C 60 SHEET 5 F 5 GLU C 107 PRO C 111 -1 N TRP C 110 O LEU C 118 SHEET 1 G 2 MSE D 8 SER D 10 0 SHEET 2 G 2 GLU D 43 VAL D 45 1 O GLU D 43 N ILE D 9 SHEET 1 H 5 LYS D 88 SER D 90 0 SHEET 2 H 5 GLU D 71 VAL D 77 1 N VAL D 77 O ILE D 89 SHEET 3 H 5 THR D 60 VAL D 65 -1 N PHE D 63 O PHE D 72 SHEET 4 H 5 VAL D 117 THR D 126 -1 O THR D 126 N THR D 60 SHEET 5 H 5 GLU D 107 PRO D 111 -1 N TRP D 110 O LEU D 118 LINK C ILE A 7 N MSE A 8 1555 1555 1.33 LINK C MSE A 8 N ILE A 9 1555 1555 1.34 LINK C THR A 56 N MSE A 57 1555 1555 1.32 LINK C MSE A 57 N ASN A 58 1555 1555 1.34 LINK C PHE A 72 N OCS A 73 1555 1555 1.33 LINK C OCS A 73 N LEU A 74 1555 1555 1.34 LINK C ILE B 7 N MSE B 8 1555 1555 1.32 LINK C MSE B 8 N ILE B 9 1555 1555 1.34 LINK C THR B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N ASN B 58 1555 1555 1.33 LINK C PHE B 72 N OCS B 73 1555 1555 1.33 LINK C OCS B 73 N LEU B 74 1555 1555 1.33 LINK C ILE C 7 N MSE C 8 1555 1555 1.33 LINK C MSE C 8 N ILE C 9 1555 1555 1.33 LINK C THR C 56 N MSE C 57 1555 1555 1.33 LINK C MSE C 57 N ASN C 58 1555 1555 1.33 LINK C PHE C 72 N OCS C 73 1555 1555 1.33 LINK C OCS C 73 N LEU C 74 1555 1555 1.33 LINK C ILE D 7 N MSE D 8 1555 1555 1.33 LINK C MSE D 8 N ILE D 9 1555 1555 1.32 LINK C THR D 56 N MSE D 57 1555 1555 1.33 LINK C MSE D 57 N ASN D 58 1555 1555 1.34 LINK C PHE D 72 N OCS D 73 1555 1555 1.32 LINK C OCS D 73 N LEU D 74 1555 1555 1.33 CRYST1 76.628 80.838 171.387 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013050 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012370 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005835 0.00000