HEADER TOXIN 27-APR-07 2POS TITLE CRYSTAL STRUCTURE OF SYLVATICIN, A NEW SECRETED PROTEIN FROM PYTHIUM TITLE 2 SYLVATICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYLVATICIN; COMPND 3 CHAIN: A, B, C, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYTHIUM SYLVATICUM; SOURCE 3 ORGANISM_TAXID: 82950; SOURCE 4 STRAIN: STRAIN 37 KEYWDS SYLVATICIN, ELICITIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR M.B.LASCOMBE,T.PRANGE REVDAT 3 03-APR-24 2POS 1 REMARK LINK REVDAT 2 24-FEB-09 2POS 1 VERSN REVDAT 1 18-MAR-08 2POS 0 JRNL AUTH M.B.LASCOMBE,P.RETAILLEAU,M.PONCHET,B.INDUSTRI,J.P.BLEIN, JRNL AUTH 2 T.PRANGE JRNL TITL STRUCTURE OF SYLVATICIN, A NEW ALPHA-ELICITIN-LIKE PROTEIN JRNL TITL 2 FROM PYTHIUM SYLVATICUM. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 1102 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17881828 JRNL DOI 10.1107/S0907444907043363 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.B.LASCOMBE,M.PONCHET,L.CARDIN,M.L.MILAT,J.P.BLEIN,T.PRANGE REMARK 1 TITL PURIFICATION,CRYSTALLISATION AND PRELIMINARY X-RAY STUDIES REMARK 1 TITL 2 OF SYLVATICIN, AN ELICITIN-LIKE PROTEIN FROM PYTHIUM REMARK 1 TITL 3 SYLVATICUM REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. D60 362 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 40262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2024 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2875 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.1640 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 734 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.630 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3057 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4176 ; 1.110 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 4.767 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;27.403 ;26.033 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 494 ;11.806 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 6.956 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 467 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2296 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1580 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2181 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 578 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.007 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 129 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 93 ; 0.109 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1970 ; 0.497 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3120 ; 0.897 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1223 ; 1.610 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1056 ; 2.647 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2POS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40560 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 33.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.12000 REMARK 200 R SYM FOR SHELL (I) : 0.10000 REMARK 200 FOR SHELL : 9.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SYLVATICIN C2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 2000MME, 10MM NICL2, 0.1M REMARK 280 TRIS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 77 CL CL A 3000 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 4 -33.09 -134.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 100 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 1 N REMARK 620 2 TRP A 1 O 81.0 REMARK 620 3 TRS A2003 N 102.0 173.1 REMARK 620 4 TRS A2003 O1 95.0 92.6 81.1 REMARK 620 5 TRS A2003 O2 176.0 95.6 81.1 83.1 REMARK 620 6 PHE B 94 OXT 88.3 94.6 91.7 172.5 94.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 100 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 94 OXT REMARK 620 2 HOH A3173 O 88.4 REMARK 620 3 TRP B 1 N 86.3 167.9 REMARK 620 4 TRP B 1 O 99.0 90.0 80.2 REMARK 620 5 TRS B2000 O3 164.5 91.9 96.1 96.6 REMARK 620 6 TRS B2000 N 85.6 89.4 101.0 175.4 78.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 100 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP C 1 N REMARK 620 2 TRP C 1 O 81.2 REMARK 620 3 TRS C2001 O2 96.5 97.4 REMARK 620 4 TRS C2001 N 103.1 175.6 81.3 REMARK 620 5 HOH C2018 O 167.0 88.2 92.3 87.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI D 100 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP D 1 N REMARK 620 2 TRP D 1 O 79.9 REMARK 620 3 TRS D2002 O1 94.7 93.3 REMARK 620 4 TRS D2002 N 96.6 168.9 76.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI D 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 3000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS C 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS D 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 2003 DBREF 2POS A 1 94 PDB 2POS 2POS 1 94 DBREF 2POS B 1 94 PDB 2POS 2POS 1 94 DBREF 2POS C 1 94 PDB 2POS 2POS 1 94 DBREF 2POS D 1 94 PDB 2POS 2POS 1 94 SEQRES 1 A 94 TRP GLU GLU THR LYS GLU CYS ALA PHE THR GLU PHE PHE SEQRES 2 A 94 LYS LEU ALA PRO LEU ALA SER ASN PRO ALA LEU SER VAL SEQRES 3 A 94 CYS GLN ASP ALA SER GLY TRP GLN MET LEU PRO PRO ALA SEQRES 4 A 94 GLY TYR PRO THR PRO GLU GLN LEU LYS LEU MET CYS GLY SEQRES 5 A 94 THR ALA GLU CYS PHE THR LEU ILE ASP ALA ILE LYS ALA SEQRES 6 A 94 LEU ASN PRO ASN ASP CYS ILE LEU VAL PHE GLY ASP VAL SEQRES 7 A 94 ARG LEU ASN VAL LYS LYS LEU VAL THR GLU PHE GLU PRO SEQRES 8 A 94 SER CYS PHE SEQRES 1 B 94 TRP GLU GLU THR LYS GLU CYS ALA PHE THR GLU PHE PHE SEQRES 2 B 94 LYS LEU ALA PRO LEU ALA SER ASN PRO ALA LEU SER VAL SEQRES 3 B 94 CYS GLN ASP ALA SER GLY TRP GLN MET LEU PRO PRO ALA SEQRES 4 B 94 GLY TYR PRO THR PRO GLU GLN LEU LYS LEU MET CYS GLY SEQRES 5 B 94 THR ALA GLU CYS PHE THR LEU ILE ASP ALA ILE LYS ALA SEQRES 6 B 94 LEU ASN PRO ASN ASP CYS ILE LEU VAL PHE GLY ASP VAL SEQRES 7 B 94 ARG LEU ASN VAL LYS LYS LEU VAL THR GLU PHE GLU PRO SEQRES 8 B 94 SER CYS PHE SEQRES 1 C 94 TRP GLU GLU THR LYS GLU CYS ALA PHE THR GLU PHE PHE SEQRES 2 C 94 LYS LEU ALA PRO LEU ALA SER ASN PRO ALA LEU SER VAL SEQRES 3 C 94 CYS GLN ASP ALA SER GLY TRP GLN MET LEU PRO PRO ALA SEQRES 4 C 94 GLY TYR PRO THR PRO GLU GLN LEU LYS LEU MET CYS GLY SEQRES 5 C 94 THR ALA GLU CYS PHE THR LEU ILE ASP ALA ILE LYS ALA SEQRES 6 C 94 LEU ASN PRO ASN ASP CYS ILE LEU VAL PHE GLY ASP VAL SEQRES 7 C 94 ARG LEU ASN VAL LYS LYS LEU VAL THR GLU PHE GLU PRO SEQRES 8 C 94 SER CYS PHE SEQRES 1 D 94 TRP GLU GLU THR LYS GLU CYS ALA PHE THR GLU PHE PHE SEQRES 2 D 94 LYS LEU ALA PRO LEU ALA SER ASN PRO ALA LEU SER VAL SEQRES 3 D 94 CYS GLN ASP ALA SER GLY TRP GLN MET LEU PRO PRO ALA SEQRES 4 D 94 GLY TYR PRO THR PRO GLU GLN LEU LYS LEU MET CYS GLY SEQRES 5 D 94 THR ALA GLU CYS PHE THR LEU ILE ASP ALA ILE LYS ALA SEQRES 6 D 94 LEU ASN PRO ASN ASP CYS ILE LEU VAL PHE GLY ASP VAL SEQRES 7 D 94 ARG LEU ASN VAL LYS LYS LEU VAL THR GLU PHE GLU PRO SEQRES 8 D 94 SER CYS PHE HET NI A 100 1 HET CL A3000 1 HET TRS A2003 8 HET NI B 100 1 HET TRS B2000 8 HET NI C 100 1 HET TRS C2001 8 HET NI D 100 1 HET TRS D2002 8 HETNAM NI NICKEL (II) ION HETNAM CL CHLORIDE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 5 NI 4(NI 2+) FORMUL 6 CL CL 1- FORMUL 7 TRS 4(C4 H12 N O3 1+) FORMUL 14 HOH *734(H2 O) HELIX 1 1 PHE A 9 LYS A 14 1 6 HELIX 2 2 LEU A 15 SER A 20 5 6 HELIX 3 3 ASN A 21 GLY A 32 1 12 HELIX 4 4 THR A 43 GLY A 52 1 10 HELIX 5 5 THR A 53 ALA A 65 1 13 HELIX 6 6 ASN A 81 CYS A 93 1 13 HELIX 7 7 PHE B 9 LYS B 14 1 6 HELIX 8 8 LEU B 15 SER B 20 5 6 HELIX 9 9 ASN B 21 GLY B 32 1 12 HELIX 10 10 THR B 43 GLY B 52 1 10 HELIX 11 11 THR B 53 LEU B 66 1 14 HELIX 12 12 VAL B 82 CYS B 93 1 12 HELIX 13 13 PHE C 9 LYS C 14 1 6 HELIX 14 14 LEU C 15 SER C 20 5 6 HELIX 15 15 ASN C 21 GLY C 32 1 12 HELIX 16 16 THR C 43 GLY C 52 1 10 HELIX 17 17 THR C 53 ALA C 65 1 13 HELIX 18 18 VAL C 82 CYS C 93 1 12 HELIX 19 19 ALA D 8 SER D 20 5 13 HELIX 20 20 ASN D 21 GLY D 32 1 12 HELIX 21 21 THR D 43 GLY D 52 1 10 HELIX 22 22 THR D 53 ALA D 65 1 13 HELIX 23 23 ASN D 81 CYS D 93 1 13 SHEET 1 A 2 LEU A 73 PHE A 75 0 SHEET 2 A 2 VAL A 78 LEU A 80 -1 O LEU A 80 N LEU A 73 SHEET 1 B 2 ILE B 72 PHE B 75 0 SHEET 2 B 2 VAL B 78 ASN B 81 -1 O LEU B 80 N LEU B 73 SHEET 1 C 2 ILE C 72 PHE C 75 0 SHEET 2 C 2 VAL C 78 ASN C 81 -1 O LEU C 80 N LEU C 73 SHEET 1 D 2 LEU D 73 PHE D 75 0 SHEET 2 D 2 VAL D 78 LEU D 80 -1 O LEU D 80 N LEU D 73 SSBOND 1 CYS A 7 CYS A 71 1555 1555 2.03 SSBOND 2 CYS A 27 CYS A 56 1555 1555 2.05 SSBOND 3 CYS A 51 CYS A 93 1555 1555 2.02 SSBOND 4 CYS B 7 CYS B 71 1555 1555 2.05 SSBOND 5 CYS B 27 CYS B 56 1555 1555 2.05 SSBOND 6 CYS B 51 CYS B 93 1555 1555 2.03 SSBOND 7 CYS C 7 CYS C 71 1555 1555 2.04 SSBOND 8 CYS C 27 CYS C 56 1555 1555 2.06 SSBOND 9 CYS C 51 CYS C 93 1555 1555 2.02 SSBOND 10 CYS D 7 CYS D 71 1555 1555 2.03 SSBOND 11 CYS D 27 CYS D 56 1555 1555 2.05 SSBOND 12 CYS D 51 CYS D 93 1555 1555 2.02 LINK N TRP A 1 NI NI A 100 1555 1555 2.10 LINK O TRP A 1 NI NI A 100 1555 1555 2.05 LINK OXT PHE A 94 NI NI B 100 1555 1555 2.01 LINK NI NI A 100 N TRS A2003 1555 1555 2.16 LINK NI NI A 100 O1 TRS A2003 1555 1555 2.07 LINK NI NI A 100 O2 TRS A2003 1555 1555 2.09 LINK NI NI A 100 OXT PHE B 94 1555 1555 1.94 LINK O HOH A3173 NI NI B 100 1555 1555 2.11 LINK N TRP B 1 NI NI B 100 1555 1555 2.14 LINK O TRP B 1 NI NI B 100 1555 1555 2.15 LINK NI NI B 100 O3 TRS B2000 1555 1555 2.03 LINK NI NI B 100 N TRS B2000 1555 1555 2.23 LINK N TRP C 1 NI NI C 100 1555 1555 2.19 LINK O TRP C 1 NI NI C 100 1555 1555 2.04 LINK NI NI C 100 O2 TRS C2001 1555 1555 2.13 LINK NI NI C 100 N TRS C2001 1555 1555 2.11 LINK NI NI C 100 O HOH C2018 1555 1555 2.12 LINK N TRP D 1 NI NI D 100 1555 1555 2.23 LINK O TRP D 1 NI NI D 100 1555 1555 2.03 LINK NI NI D 100 O1 TRS D2002 1555 1555 1.90 LINK NI NI D 100 N TRS D2002 1555 1555 2.18 CISPEP 1 LEU A 36 PRO A 37 0 -6.09 CISPEP 2 LEU B 36 PRO B 37 0 -5.00 CISPEP 3 LEU C 36 PRO C 37 0 -8.11 CISPEP 4 LEU D 36 PRO D 37 0 -3.19 SITE 1 AC1 4 PRO A 91 PHE A 94 HOH A3173 TRP B 1 SITE 1 AC2 3 TRP C 1 HOH C2018 PHE D 94 SITE 1 AC3 3 PHE C 94 HOH C2062 TRP D 1 SITE 1 AC4 3 TRP A 1 PRO B 91 PHE B 94 SITE 1 AC5 6 ASP A 77 HOH A3052 HOH A3084 HOH A3170 SITE 2 AC5 6 HOH A3179 HOH A3182 SITE 1 AC6 10 PRO A 91 SER A 92 PHE A 94 HOH A3173 SITE 2 AC6 10 TRP B 1 GLU B 3 HOH B2026 HOH B2058 SITE 3 AC6 10 HOH B2175 ALA C 65 SITE 1 AC7 9 ALA B 65 HOH B2141 TRP C 1 GLU C 3 SITE 2 AC7 9 HOH C2018 PRO D 91 SER D 92 PHE D 94 SITE 3 AC7 9 HOH D2023 SITE 1 AC8 8 PRO C 91 SER C 92 PHE C 94 HOH C2046 SITE 2 AC8 8 HOH C2062 HOH C2091 TRP D 1 GLU D 3 SITE 1 AC9 7 TRP A 1 GLU A 3 HOH A3062 HOH A3172 SITE 2 AC9 7 PRO B 91 PHE B 94 HOH B2064 CRYST1 36.220 46.000 55.730 85.20 71.27 74.63 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027609 -0.007589 -0.009373 0.00000 SCALE2 0.000000 0.022545 0.000035 0.00000 SCALE3 0.000000 0.000000 0.018947 0.00000