data_2PP6 # _entry.id 2PP6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2PP6 RCSB RCSB042628 WWPDB D_1000042628 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC23283 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PP6 _pdbx_database_status.recvd_initial_deposition_date 2007-04-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, Y.' 1 'Li, H.' 2 'Holzle, D.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of the ATP-binding sugar transporter-like protein from Salmonella typhimurium.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, Y.' 1 primary 'Li, H.' 2 primary 'Holzle, D.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 2PP6 _cell.length_a 51.820 _cell.length_b 51.820 _cell.length_c 69.329 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PP6 _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Gifsy-2 prophage ATP-binding sugar transporter-like protein' 11344.324 1 ? ? ? ? 2 water nat water 18.015 28 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)ADLFDG(MSE)KRR(MSE)DALIAERFG(MSE)KVNINGTDCIVVESDFLAELGPVEGNGKNVVVFSGNVIP RRGDRVVLRGSEFTVTRIRRFNGKPQLTLEENNGGKGA ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMADLFDGMKRRMDALIAERFGMKVNINGTDCIVVESDFLAELGPVEGNGKNVVVFSGNVIPRRGDRVVLRGSEFTVT RIRRFNGKPQLTLEENNGGKGA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC23283 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ALA n 1 6 ASP n 1 7 LEU n 1 8 PHE n 1 9 ASP n 1 10 GLY n 1 11 MSE n 1 12 LYS n 1 13 ARG n 1 14 ARG n 1 15 MSE n 1 16 ASP n 1 17 ALA n 1 18 LEU n 1 19 ILE n 1 20 ALA n 1 21 GLU n 1 22 ARG n 1 23 PHE n 1 24 GLY n 1 25 MSE n 1 26 LYS n 1 27 VAL n 1 28 ASN n 1 29 ILE n 1 30 ASN n 1 31 GLY n 1 32 THR n 1 33 ASP n 1 34 CYS n 1 35 ILE n 1 36 VAL n 1 37 VAL n 1 38 GLU n 1 39 SER n 1 40 ASP n 1 41 PHE n 1 42 LEU n 1 43 ALA n 1 44 GLU n 1 45 LEU n 1 46 GLY n 1 47 PRO n 1 48 VAL n 1 49 GLU n 1 50 GLY n 1 51 ASN n 1 52 GLY n 1 53 LYS n 1 54 ASN n 1 55 VAL n 1 56 VAL n 1 57 VAL n 1 58 PHE n 1 59 SER n 1 60 GLY n 1 61 ASN n 1 62 VAL n 1 63 ILE n 1 64 PRO n 1 65 ARG n 1 66 ARG n 1 67 GLY n 1 68 ASP n 1 69 ARG n 1 70 VAL n 1 71 VAL n 1 72 LEU n 1 73 ARG n 1 74 GLY n 1 75 SER n 1 76 GLU n 1 77 PHE n 1 78 THR n 1 79 VAL n 1 80 THR n 1 81 ARG n 1 82 ILE n 1 83 ARG n 1 84 ARG n 1 85 PHE n 1 86 ASN n 1 87 GLY n 1 88 LYS n 1 89 PRO n 1 90 GLN n 1 91 LEU n 1 92 THR n 1 93 LEU n 1 94 GLU n 1 95 GLU n 1 96 ASN n 1 97 ASN n 1 98 GLY n 1 99 GLY n 1 100 LYS n 1 101 GLY n 1 102 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Salmonella _entity_src_gen.pdbx_gene_src_gene STM1035 _entity_src_gen.gene_src_species 'Salmonella typhimurium' _entity_src_gen.gene_src_strain 'LT2, SGSC1412' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salmonella typhimurium LT2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 99287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 700720 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8ZQ92_SALTY _struct_ref.pdbx_db_accession Q8ZQ92 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MADLFDGMKRRMDALIAERFGMKVNINGTDCIVVESDFLAELGPVEGNGKNVVVFSGNVIPRRGDRVVLRGSEFTVTRIR RFNGKPQLTLEENNGGKGA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2PP6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 102 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8ZQ92 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 99 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2PP6 SER A 1 ? UNP Q8ZQ92 ? ? 'CLONING ARTIFACT' -2 1 1 2PP6 ASN A 2 ? UNP Q8ZQ92 ? ? 'CLONING ARTIFACT' -1 2 1 2PP6 ALA A 3 ? UNP Q8ZQ92 ? ? 'CLONING ARTIFACT' 0 3 1 2PP6 MSE A 4 ? UNP Q8ZQ92 MET 1 'MODIFIED RESIDUE' 1 4 1 2PP6 MSE A 11 ? UNP Q8ZQ92 MET 8 'MODIFIED RESIDUE' 8 5 1 2PP6 MSE A 15 ? UNP Q8ZQ92 MET 12 'MODIFIED RESIDUE' 12 6 1 2PP6 MSE A 25 ? UNP Q8ZQ92 MET 22 'MODIFIED RESIDUE' 22 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2PP6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_percent_sol 40.02 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '1.4 M Ammonium citrate pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-2 _diffrn_detector.pdbx_collection_date 2004-03-25 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97983 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97983 # _reflns.entry_id 2PP6 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.70 _reflns.d_resolution_low 32.4 _reflns.number_all 2872 _reflns.number_obs 2872 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.155 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 15.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.8 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.949 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 9.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 263 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2PP6 _refine.ls_number_reflns_obs 2592 _refine.ls_number_reflns_all 2592 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.40 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 99.86 _refine.ls_R_factor_obs 0.216 _refine.ls_R_factor_all 0.216 _refine.ls_R_factor_R_work 0.210 _refine.ls_R_factor_R_free 0.279 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.4 _refine.ls_number_reflns_R_free 269 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.929 _refine.correlation_coeff_Fo_to_Fc_free 0.891 _refine.B_iso_mean 39.850 _refine.aniso_B[1][1] 0.88 _refine.aniso_B[2][2] 0.88 _refine.aniso_B[3][3] -1.76 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'CNS 1.1 has also been used in refinement' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.410 _refine.overall_SU_ML 0.274 _refine.overall_SU_B 27.603 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 689 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 717 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 32.40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 695 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.443 1.959 ? 929 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 1.633 5.000 ? 86 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.222 22.571 ? 35 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 22.004 15.000 ? 130 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.299 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.087 0.200 ? 105 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 520 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.277 0.200 ? 307 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.180 0.200 ? 34 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.357 0.200 ? 53 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.208 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 7.686 1.500 ? 432 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 12.159 2.000 ? 694 'X-RAY DIFFRACTION' ? r_scbond_it 5.870 3.000 ? 263 'X-RAY DIFFRACTION' ? r_scangle_it 9.454 4.500 ? 235 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.70 _refine_ls_shell.d_res_low 2.77 _refine_ls_shell.number_reflns_R_work 177 _refine_ls_shell.R_factor_R_work 0.362 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.597 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 13 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 190 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2PP6 _struct.title 'Crystal structure of the ATP-binding sugar transporter-like protein from Salmonella typhimurium' _struct.pdbx_descriptor 'Gifsy-2 prophage ATP-binding sugar transporter-like protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PP6 _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text ;beta barrel, 4 helix bundle, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, TRANSPORT PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ;tetramer (based on the PISA site) x,y,z -x+1,-y,+1,z y,x,-z -y+1,-x+1,-z ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? GLY A 24 ? SER A -2 GLY A 21 1 ? 24 HELX_P HELX_P2 2 ASP A 40 ? LEU A 42 ? ASP A 37 LEU A 39 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A ALA 5 N ? ? A MSE 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A GLY 10 C ? ? ? 1_555 A MSE 11 N ? ? A GLY 7 A MSE 8 1_555 ? ? ? ? ? ? ? 1.322 ? covale4 covale ? ? A MSE 11 C ? ? ? 1_555 A LYS 12 N ? ? A MSE 8 A LYS 9 1_555 ? ? ? ? ? ? ? 1.328 ? covale5 covale ? ? A ARG 14 C ? ? ? 1_555 A MSE 15 N ? ? A ARG 11 A MSE 12 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 15 C ? ? ? 1_555 A ASP 16 N ? ? A MSE 12 A ASP 13 1_555 ? ? ? ? ? ? ? 1.325 ? covale7 covale ? ? A GLY 24 C ? ? ? 1_555 A MSE 25 N ? ? A GLY 21 A MSE 22 1_555 ? ? ? ? ? ? ? 1.332 ? covale8 covale ? ? A MSE 25 C ? ? ? 1_555 A LYS 26 N ? ? A MSE 22 A LYS 23 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MSE A 25 ? ILE A 29 ? MSE A 22 ILE A 26 A 2 THR A 32 ? GLU A 38 ? THR A 29 GLU A 35 A 3 LYS A 53 ? VAL A 57 ? LYS A 50 VAL A 54 A 4 LYS A 88 ? GLU A 95 ? LYS A 85 GLU A 92 A 5 SER A 75 ? PHE A 85 ? SER A 72 PHE A 82 A 6 ARG A 69 ? LEU A 72 ? ARG A 66 LEU A 69 A 7 MSE A 25 ? ILE A 29 ? MSE A 22 ILE A 26 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 29 ? N ILE A 26 O THR A 32 ? O THR A 29 A 2 3 N VAL A 37 ? N VAL A 34 O VAL A 56 ? O VAL A 53 A 3 4 N LYS A 53 ? N LYS A 50 O LEU A 93 ? O LEU A 90 A 4 5 O GLN A 90 ? O GLN A 87 N ARG A 83 ? N ARG A 80 A 5 6 O SER A 75 ? O SER A 72 N LEU A 72 ? N LEU A 69 A 6 7 O VAL A 71 ? O VAL A 68 N ASN A 28 ? N ASN A 25 # _database_PDB_matrix.entry_id 2PP6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2PP6 _atom_sites.fract_transf_matrix[1][1] 0.019298 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019298 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014424 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 -2 SER SER A . n A 1 2 ASN 2 -1 -1 ASN ASN A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 ALA 5 2 2 ALA ALA A . n A 1 6 ASP 6 3 3 ASP ASP A . n A 1 7 LEU 7 4 4 LEU LEU A . n A 1 8 PHE 8 5 5 PHE PHE A . n A 1 9 ASP 9 6 6 ASP ASP A . n A 1 10 GLY 10 7 7 GLY GLY A . n A 1 11 MSE 11 8 8 MSE MSE A . n A 1 12 LYS 12 9 9 LYS LYS A . n A 1 13 ARG 13 10 10 ARG ARG A . n A 1 14 ARG 14 11 11 ARG ARG A . n A 1 15 MSE 15 12 12 MSE MSE A . n A 1 16 ASP 16 13 13 ASP ASP A . n A 1 17 ALA 17 14 14 ALA ALA A . n A 1 18 LEU 18 15 15 LEU LEU A . n A 1 19 ILE 19 16 16 ILE ILE A . n A 1 20 ALA 20 17 17 ALA ALA A . n A 1 21 GLU 21 18 18 GLU GLU A . n A 1 22 ARG 22 19 19 ARG ARG A . n A 1 23 PHE 23 20 20 PHE PHE A . n A 1 24 GLY 24 21 21 GLY GLY A . n A 1 25 MSE 25 22 22 MSE MSE A . n A 1 26 LYS 26 23 23 LYS LYS A . n A 1 27 VAL 27 24 24 VAL VAL A . n A 1 28 ASN 28 25 25 ASN ASN A . n A 1 29 ILE 29 26 26 ILE ILE A . n A 1 30 ASN 30 27 27 ASN ASN A . n A 1 31 GLY 31 28 28 GLY GLY A . n A 1 32 THR 32 29 29 THR THR A . n A 1 33 ASP 33 30 30 ASP ASP A . n A 1 34 CYS 34 31 31 CYS CYS A . n A 1 35 ILE 35 32 32 ILE ILE A . n A 1 36 VAL 36 33 33 VAL VAL A . n A 1 37 VAL 37 34 34 VAL VAL A . n A 1 38 GLU 38 35 35 GLU GLU A . n A 1 39 SER 39 36 36 SER SER A . n A 1 40 ASP 40 37 37 ASP ASP A . n A 1 41 PHE 41 38 38 PHE PHE A . n A 1 42 LEU 42 39 39 LEU LEU A . n A 1 43 ALA 43 40 40 ALA ALA A . n A 1 44 GLU 44 41 ? ? ? A . n A 1 45 LEU 45 42 ? ? ? A . n A 1 46 GLY 46 43 ? ? ? A . n A 1 47 PRO 47 44 ? ? ? A . n A 1 48 VAL 48 45 ? ? ? A . n A 1 49 GLU 49 46 ? ? ? A . n A 1 50 GLY 50 47 ? ? ? A . n A 1 51 ASN 51 48 ? ? ? A . n A 1 52 GLY 52 49 49 GLY GLY A . n A 1 53 LYS 53 50 50 LYS LYS A . n A 1 54 ASN 54 51 51 ASN ASN A . n A 1 55 VAL 55 52 52 VAL VAL A . n A 1 56 VAL 56 53 53 VAL VAL A . n A 1 57 VAL 57 54 54 VAL VAL A . n A 1 58 PHE 58 55 55 PHE PHE A . n A 1 59 SER 59 56 56 SER SER A . n A 1 60 GLY 60 57 57 GLY GLY A . n A 1 61 ASN 61 58 58 ASN ASN A . n A 1 62 VAL 62 59 59 VAL VAL A . n A 1 63 ILE 63 60 60 ILE ILE A . n A 1 64 PRO 64 61 61 PRO PRO A . n A 1 65 ARG 65 62 62 ARG ARG A . n A 1 66 ARG 66 63 63 ARG ARG A . n A 1 67 GLY 67 64 64 GLY GLY A . n A 1 68 ASP 68 65 65 ASP ASP A . n A 1 69 ARG 69 66 66 ARG ARG A . n A 1 70 VAL 70 67 67 VAL VAL A . n A 1 71 VAL 71 68 68 VAL VAL A . n A 1 72 LEU 72 69 69 LEU LEU A . n A 1 73 ARG 73 70 70 ARG ARG A . n A 1 74 GLY 74 71 71 GLY GLY A . n A 1 75 SER 75 72 72 SER SER A . n A 1 76 GLU 76 73 73 GLU GLU A . n A 1 77 PHE 77 74 74 PHE PHE A . n A 1 78 THR 78 75 75 THR THR A . n A 1 79 VAL 79 76 76 VAL VAL A . n A 1 80 THR 80 77 77 THR THR A . n A 1 81 ARG 81 78 78 ARG ARG A . n A 1 82 ILE 82 79 79 ILE ILE A . n A 1 83 ARG 83 80 80 ARG ARG A . n A 1 84 ARG 84 81 81 ARG ARG A . n A 1 85 PHE 85 82 82 PHE PHE A . n A 1 86 ASN 86 83 83 ASN ASN A . n A 1 87 GLY 87 84 84 GLY GLY A . n A 1 88 LYS 88 85 85 LYS LYS A . n A 1 89 PRO 89 86 86 PRO PRO A . n A 1 90 GLN 90 87 87 GLN GLN A . n A 1 91 LEU 91 88 88 LEU LEU A . n A 1 92 THR 92 89 89 THR THR A . n A 1 93 LEU 93 90 90 LEU LEU A . n A 1 94 GLU 94 91 91 GLU GLU A . n A 1 95 GLU 95 92 92 GLU GLU A . n A 1 96 ASN 96 93 93 ASN ASN A . n A 1 97 ASN 97 94 ? ? ? A . n A 1 98 GLY 98 95 ? ? ? A . n A 1 99 GLY 99 96 ? ? ? A . n A 1 100 LYS 100 97 ? ? ? A . n A 1 101 GLY 101 98 ? ? ? A . n A 1 102 ALA 102 99 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 100 1 HOH HOH A . B 2 HOH 2 101 2 HOH HOH A . B 2 HOH 3 102 3 HOH HOH A . B 2 HOH 4 103 4 HOH HOH A . B 2 HOH 5 104 5 HOH HOH A . B 2 HOH 6 105 6 HOH HOH A . B 2 HOH 7 106 7 HOH HOH A . B 2 HOH 8 107 8 HOH HOH A . B 2 HOH 9 108 9 HOH HOH A . B 2 HOH 10 109 10 HOH HOH A . B 2 HOH 11 110 11 HOH HOH A . B 2 HOH 12 111 12 HOH HOH A . B 2 HOH 13 112 13 HOH HOH A . B 2 HOH 14 113 14 HOH HOH A . B 2 HOH 15 114 15 HOH HOH A . B 2 HOH 16 115 16 HOH HOH A . B 2 HOH 17 116 17 HOH HOH A . B 2 HOH 18 117 18 HOH HOH A . B 2 HOH 19 118 19 HOH HOH A . B 2 HOH 20 119 20 HOH HOH A . B 2 HOH 21 120 21 HOH HOH A . B 2 HOH 22 121 22 HOH HOH A . B 2 HOH 23 122 23 HOH HOH A . B 2 HOH 24 123 24 HOH HOH A . B 2 HOH 25 124 25 HOH HOH A . B 2 HOH 26 125 26 HOH HOH A . B 2 HOH 27 126 27 HOH HOH A . B 2 HOH 28 127 28 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 11 A MSE 8 ? MET SELENOMETHIONINE 3 A MSE 15 A MSE 12 ? MET SELENOMETHIONINE 4 A MSE 25 A MSE 22 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4 A,B 2 1,2 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6000 ? 1 MORE -43 ? 1 'SSA (A^2)' 18040 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 51.8200000000 0.0000000000 -1.0000000000 0.0000000000 51.8200000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0.0000000000 -1.0000000000 0.0000000000 51.8200000000 -1.0000000000 0.0000000000 0.0000000000 51.8200000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-05-29 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 28.7452 17.1074 10.9065 0.0613 0.1086 0.0056 0.0198 -0.0080 -0.0153 0.3714 1.4217 1.3439 -0.4961 0.7062 -0.9733 0.0057 -0.0774 0.0438 0.0016 0.0365 -0.0878 0.0628 -0.0455 -0.0422 'X-RAY DIFFRACTION' 2 ? refined 35.6873 15.6693 24.0797 0.0919 0.0256 0.0207 -0.0277 -0.0539 -0.0065 2.5909 3.8902 1.2453 -0.8093 -0.5237 0.4758 0.1365 0.0209 0.1009 0.3111 -0.1277 -0.3320 -0.1299 -0.1674 -0.0088 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A -2 A 1 A 40 A 43 ? 'X-RAY DIFFRACTION' ? 2 2 A 49 A 52 A 93 A 96 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0000 ? 1 SBC-Collect 'data collection' . ? 2 HKL-2000 'data collection' . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 HKL-3000 phasing . ? 6 SHELXCD phasing . ? 7 SHELXD phasing . ? 8 SHELXE 'model building' . ? 9 MLPHARE phasing . ? 10 SOLVE phasing . ? 11 RESOLVE phasing . ? 12 PHENIX phasing . ? 13 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). AUTHORS STATE THAT THE ASSEMBLY SHOWN IN REMARK 350 IS PREDICTED BY THE ANALYSIS OF PROTEIN INTERFACES BASED ON THIS CRYSTAL STRUCTURE. ; # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 80 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -108.46 _pdbx_validate_torsion.psi -168.28 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 41 ? A GLU 44 2 1 Y 1 A LEU 42 ? A LEU 45 3 1 Y 1 A GLY 43 ? A GLY 46 4 1 Y 1 A PRO 44 ? A PRO 47 5 1 Y 1 A VAL 45 ? A VAL 48 6 1 Y 1 A GLU 46 ? A GLU 49 7 1 Y 1 A GLY 47 ? A GLY 50 8 1 Y 1 A ASN 48 ? A ASN 51 9 1 Y 1 A ASN 94 ? A ASN 97 10 1 Y 1 A GLY 95 ? A GLY 98 11 1 Y 1 A GLY 96 ? A GLY 99 12 1 Y 1 A LYS 97 ? A LYS 100 13 1 Y 1 A GLY 98 ? A GLY 101 14 1 Y 1 A ALA 99 ? A ALA 102 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #