HEADER ISOMERASE 30-APR-07 2PPW TITLE THE CRYSTAL STRUCTURE OF UNCHARACTERIZED RIBOSE 5-PHOSPHATE ISOMERASE TITLE 2 RPIB FROM STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED DOMAIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UNCHARACTERIZED RIBOSE 5-PHOSPHATE ISOMERASE RPIB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 ATCC: BAA-334; SOURCE 6 GENE: SP_0319; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS THE PUTATIVE RPIB, STREPTOCOCCUS PNEUMONIAE, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MCSG, STRUCTURAL GENOMICS, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.WU,R.ZHANG,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 2PPW 1 VERSN REVDAT 2 24-FEB-09 2PPW 1 VERSN REVDAT 1 12-JUN-07 2PPW 0 JRNL AUTH R.WU,R.ZHANG,J.ABDULLAH,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF UNCHARACTERIZED RIBOSE 5-PHOSPHATE JRNL TITL 2 ISOMERASE RPIB FROM STREPTOCOCCUS PNEUMONIAE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 26774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1421 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1794 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3269 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.137 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3379 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4565 ; 1.204 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 427 ; 4.949 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;38.877 ;25.346 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 593 ;13.592 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;25.683 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2569 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1618 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2355 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 251 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 100 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2197 ; 0.770 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3345 ; 1.103 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1395 ; 1.973 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1220 ; 3.022 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 8 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 50 REMARK 3 RESIDUE RANGE : A 51 A 100 REMARK 3 RESIDUE RANGE : A 101 A 150 REMARK 3 RESIDUE RANGE : A 151 A 209 REMARK 3 RESIDUE RANGE : B 1 B 50 REMARK 3 RESIDUE RANGE : B 51 B 100 REMARK 3 RESIDUE RANGE : B 101 B 150 REMARK 3 RESIDUE RANGE : B 151 B 208 REMARK 3 ORIGIN FOR THE GROUP (A): 82.9240 -0.1170 57.9200 REMARK 3 T TENSOR REMARK 3 T11: -0.0868 T22: -0.0523 REMARK 3 T33: -0.0482 T12: 0.0291 REMARK 3 T13: 0.0158 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.5732 L22: 0.4178 REMARK 3 L33: 1.3117 L12: -0.1877 REMARK 3 L13: 0.0992 L23: 0.1403 REMARK 3 S TENSOR REMARK 3 S11: -0.0938 S12: -0.1298 S13: -0.0219 REMARK 3 S21: 0.0970 S22: 0.0856 S23: 0.0531 REMARK 3 S31: 0.0043 S32: -0.1643 S33: 0.0083 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB042653. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26774 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 85.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA ACETATE PH 4.6, 0.4M MG REMARK 280 FORMATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.45750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.20800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.45750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.20800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 185.83000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 185.83000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -146.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 185.83000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 VAL A 210 REMARK 465 LEU A 211 REMARK 465 ALA A 212 REMARK 465 LYS A 213 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 GLU B 209 REMARK 465 VAL B 210 REMARK 465 LEU B 211 REMARK 465 ALA B 212 REMARK 465 LYS B 213 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN B 163 N CA C O CB CG CD REMARK 480 GLN B 163 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 465 O HOH B 466 2.10 REMARK 500 O HOH A 338 O HOH A 386 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 72 -161.24 -168.23 REMARK 500 ALA A 116 -56.98 -126.18 REMARK 500 ILE A 176 150.55 -47.17 REMARK 500 CYS B 72 -165.77 -165.27 REMARK 500 ALA B 116 -54.02 -124.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 402 DISTANCE = 5.22 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC80227 RELATED DB: TARGETDB DBREF 2PPW A 1 213 UNP Q97SL3 Q97SL3_STRPN 1 213 DBREF 2PPW B 1 213 UNP Q97SL3 Q97SL3_STRPN 1 213 SEQADV 2PPW SER A -2 UNP Q97SL3 CLONING ARTIFACT SEQADV 2PPW ASN A -1 UNP Q97SL3 CLONING ARTIFACT SEQADV 2PPW ALA A 0 UNP Q97SL3 CLONING ARTIFACT SEQADV 2PPW MSE A 1 UNP Q97SL3 MET 1 MODIFIED RESIDUE SEQADV 2PPW MSE A 38 UNP Q97SL3 MET 38 MODIFIED RESIDUE SEQADV 2PPW MSE A 55 UNP Q97SL3 MET 55 MODIFIED RESIDUE SEQADV 2PPW MSE A 79 UNP Q97SL3 MET 79 MODIFIED RESIDUE SEQADV 2PPW MSE A 130 UNP Q97SL3 MET 130 MODIFIED RESIDUE SEQADV 2PPW MSE A 139 UNP Q97SL3 MET 139 MODIFIED RESIDUE SEQADV 2PPW MSE A 170 UNP Q97SL3 MET 170 MODIFIED RESIDUE SEQADV 2PPW SER B -2 UNP Q97SL3 CLONING ARTIFACT SEQADV 2PPW ASN B -1 UNP Q97SL3 CLONING ARTIFACT SEQADV 2PPW ALA B 0 UNP Q97SL3 CLONING ARTIFACT SEQADV 2PPW MSE B 1 UNP Q97SL3 MET 1 MODIFIED RESIDUE SEQADV 2PPW MSE B 38 UNP Q97SL3 MET 38 MODIFIED RESIDUE SEQADV 2PPW MSE B 55 UNP Q97SL3 MET 55 MODIFIED RESIDUE SEQADV 2PPW MSE B 79 UNP Q97SL3 MET 79 MODIFIED RESIDUE SEQADV 2PPW MSE B 130 UNP Q97SL3 MET 130 MODIFIED RESIDUE SEQADV 2PPW MSE B 139 UNP Q97SL3 MET 139 MODIFIED RESIDUE SEQADV 2PPW MSE B 170 UNP Q97SL3 MET 170 MODIFIED RESIDUE SEQRES 1 A 216 SER ASN ALA MSE LYS ILE ALA LEU ILE ASN GLU ASN SER SEQRES 2 A 216 GLN ALA SER LYS ASN HIS ILE ILE TYR ASP SER LEU LYS SEQRES 3 A 216 GLU ALA THR ASP LYS LYS GLY TYR GLN LEU PHE ASN TYR SEQRES 4 A 216 GLY MSE ARG GLY GLU GLU GLY GLU SER GLN LEU THR TYR SEQRES 5 A 216 VAL GLN ASN GLY LEU MSE ALA ALA ILE LEU LEU ASN THR SEQRES 6 A 216 LYS ALA VAL ASP PHE VAL VAL THR GLY CYS GLY THR GLY SEQRES 7 A 216 VAL GLY ALA MSE LEU ALA LEU ASN SER PHE PRO GLY VAL SEQRES 8 A 216 VAL CYS GLY LEU ALA VAL ASP PRO THR ASP ALA TYR LEU SEQRES 9 A 216 TYR SER GLN ILE ASN GLY GLY ASN ALA LEU SER ILE PRO SEQRES 10 A 216 TYR ALA LYS GLY PHE GLY TRP GLY ALA GLU LEU THR LEU SEQRES 11 A 216 LYS LEU MSE PHE GLU ARG LEU PHE ALA GLU GLU MSE GLY SEQRES 12 A 216 GLY GLY TYR PRO ARG GLU ARG VAL ILE PRO GLU GLN ARG SEQRES 13 A 216 ASN ALA ARG ILE LEU ASN GLU VAL LYS GLN ILE THR HIS SEQRES 14 A 216 ASN ASP LEU MSE THR ILE LEU LYS ILE ILE ASP GLN ASP SEQRES 15 A 216 PHE LEU LYS ASP THR ILE SER GLY LYS TYR PHE GLN GLU SEQRES 16 A 216 TYR PHE PHE GLU ASN CYS GLN ASP ASP GLU VAL ALA ALA SEQRES 17 A 216 TYR LEU LYS GLU VAL LEU ALA LYS SEQRES 1 B 216 SER ASN ALA MSE LYS ILE ALA LEU ILE ASN GLU ASN SER SEQRES 2 B 216 GLN ALA SER LYS ASN HIS ILE ILE TYR ASP SER LEU LYS SEQRES 3 B 216 GLU ALA THR ASP LYS LYS GLY TYR GLN LEU PHE ASN TYR SEQRES 4 B 216 GLY MSE ARG GLY GLU GLU GLY GLU SER GLN LEU THR TYR SEQRES 5 B 216 VAL GLN ASN GLY LEU MSE ALA ALA ILE LEU LEU ASN THR SEQRES 6 B 216 LYS ALA VAL ASP PHE VAL VAL THR GLY CYS GLY THR GLY SEQRES 7 B 216 VAL GLY ALA MSE LEU ALA LEU ASN SER PHE PRO GLY VAL SEQRES 8 B 216 VAL CYS GLY LEU ALA VAL ASP PRO THR ASP ALA TYR LEU SEQRES 9 B 216 TYR SER GLN ILE ASN GLY GLY ASN ALA LEU SER ILE PRO SEQRES 10 B 216 TYR ALA LYS GLY PHE GLY TRP GLY ALA GLU LEU THR LEU SEQRES 11 B 216 LYS LEU MSE PHE GLU ARG LEU PHE ALA GLU GLU MSE GLY SEQRES 12 B 216 GLY GLY TYR PRO ARG GLU ARG VAL ILE PRO GLU GLN ARG SEQRES 13 B 216 ASN ALA ARG ILE LEU ASN GLU VAL LYS GLN ILE THR HIS SEQRES 14 B 216 ASN ASP LEU MSE THR ILE LEU LYS ILE ILE ASP GLN ASP SEQRES 15 B 216 PHE LEU LYS ASP THR ILE SER GLY LYS TYR PHE GLN GLU SEQRES 16 B 216 TYR PHE PHE GLU ASN CYS GLN ASP ASP GLU VAL ALA ALA SEQRES 17 B 216 TYR LEU LYS GLU VAL LEU ALA LYS MODRES 2PPW MSE A 1 MET SELENOMETHIONINE MODRES 2PPW MSE A 38 MET SELENOMETHIONINE MODRES 2PPW MSE A 55 MET SELENOMETHIONINE MODRES 2PPW MSE A 79 MET SELENOMETHIONINE MODRES 2PPW MSE A 130 MET SELENOMETHIONINE MODRES 2PPW MSE A 139 MET SELENOMETHIONINE MODRES 2PPW MSE A 170 MET SELENOMETHIONINE MODRES 2PPW MSE B 1 MET SELENOMETHIONINE MODRES 2PPW MSE B 38 MET SELENOMETHIONINE MODRES 2PPW MSE B 55 MET SELENOMETHIONINE MODRES 2PPW MSE B 79 MET SELENOMETHIONINE MODRES 2PPW MSE B 130 MET SELENOMETHIONINE MODRES 2PPW MSE B 139 MET SELENOMETHIONINE MODRES 2PPW MSE B 170 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 38 8 HET MSE A 55 8 HET MSE A 79 16 HET MSE A 130 8 HET MSE A 139 8 HET MSE A 170 8 HET MSE B 1 8 HET MSE B 38 8 HET MSE B 55 8 HET MSE B 79 16 HET MSE B 130 8 HET MSE B 139 8 HET MSE B 170 8 HET SO4 A 301 5 HET SO4 B 302 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *271(H2 O) HELIX 1 1 GLN A 11 SER A 13 5 3 HELIX 2 2 LYS A 14 GLY A 30 1 17 HELIX 3 3 THR A 48 THR A 62 1 15 HELIX 4 4 GLY A 75 ASN A 83 1 9 HELIX 5 5 ASP A 95 ASN A 106 1 12 HELIX 6 6 GLY A 122 ALA A 136 1 15 HELIX 7 7 PRO A 144 GLU A 146 5 3 HELIX 8 8 ARG A 147 HIS A 166 1 20 HELIX 9 9 ASP A 168 ILE A 176 1 9 HELIX 10 10 ASP A 177 ILE A 185 1 9 HELIX 11 11 GLY A 187 CYS A 198 1 12 HELIX 12 12 ASP A 200 GLU A 209 1 10 HELIX 13 13 GLU B 8 SER B 13 5 6 HELIX 14 14 LYS B 14 GLY B 30 1 17 HELIX 15 15 THR B 48 THR B 62 1 15 HELIX 16 16 GLY B 75 SER B 84 1 10 HELIX 17 17 ASP B 95 ASN B 106 1 12 HELIX 18 18 GLY B 122 ALA B 136 1 15 HELIX 19 19 PRO B 144 GLU B 146 5 3 HELIX 20 20 ARG B 147 HIS B 166 1 20 HELIX 21 21 ASP B 168 ILE B 176 1 9 HELIX 22 22 ASP B 177 SER B 186 1 10 HELIX 23 23 GLY B 187 CYS B 198 1 12 HELIX 24 24 ASP B 200 LYS B 208 1 9 SHEET 1 A 5 GLN A 32 ASN A 35 0 SHEET 2 A 5 LYS A 2 LEU A 5 1 N ILE A 3 O GLN A 32 SHEET 3 A 5 PHE A 67 CYS A 72 1 O VAL A 69 N ALA A 4 SHEET 4 A 5 ALA A 110 PRO A 114 1 O LEU A 111 N THR A 70 SHEET 5 A 5 CYS A 90 LEU A 92 1 N GLY A 91 O SER A 112 SHEET 1 B 5 GLN B 32 ASN B 35 0 SHEET 2 B 5 LYS B 2 ILE B 6 1 N ILE B 3 O GLN B 32 SHEET 3 B 5 PHE B 67 CYS B 72 1 O VAL B 69 N ALA B 4 SHEET 4 B 5 ALA B 110 PRO B 114 1 O LEU B 111 N THR B 70 SHEET 5 B 5 CYS B 90 LEU B 92 1 N GLY B 91 O SER B 112 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C GLY A 37 N MSE A 38 1555 1555 1.32 LINK C MSE A 38 N ARG A 39 1555 1555 1.33 LINK C LEU A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N ALA A 56 1555 1555 1.34 LINK C ALA A 78 N AMSE A 79 1555 1555 1.34 LINK C ALA A 78 N BMSE A 79 1555 1555 1.33 LINK C AMSE A 79 N LEU A 80 1555 1555 1.33 LINK C BMSE A 79 N LEU A 80 1555 1555 1.34 LINK C LEU A 129 N MSE A 130 1555 1555 1.34 LINK C MSE A 130 N PHE A 131 1555 1555 1.34 LINK C GLU A 138 N MSE A 139 1555 1555 1.33 LINK C MSE A 139 N GLY A 140 1555 1555 1.33 LINK C LEU A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N THR A 171 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C GLY B 37 N MSE B 38 1555 1555 1.33 LINK C MSE B 38 N ARG B 39 1555 1555 1.33 LINK C LEU B 54 N MSE B 55 1555 1555 1.33 LINK C MSE B 55 N ALA B 56 1555 1555 1.33 LINK C ALA B 78 N BMSE B 79 1555 1555 1.33 LINK C ALA B 78 N AMSE B 79 1555 1555 1.33 LINK C BMSE B 79 N LEU B 80 1555 1555 1.33 LINK C AMSE B 79 N LEU B 80 1555 1555 1.33 LINK C LEU B 129 N MSE B 130 1555 1555 1.34 LINK C MSE B 130 N PHE B 131 1555 1555 1.33 LINK C GLU B 138 N MSE B 139 1555 1555 1.33 LINK C MSE B 139 N GLY B 140 1555 1555 1.33 LINK C LEU B 169 N MSE B 170 1555 1555 1.33 LINK C MSE B 170 N THR B 171 1555 1555 1.33 CISPEP 1 TYR A 143 PRO A 144 0 -3.51 CISPEP 2 TYR B 143 PRO B 144 0 -9.30 SITE 1 AC1 4 GLU A 44 SER A 45 GLY A 187 LYS A 188 SITE 1 AC2 3 GLU B 44 SER B 45 LYS B 188 CRYST1 92.915 52.416 85.018 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019078 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011762 0.00000