HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-MAY-07 2PQV TITLE CRYSTAL STRUCTURE OF MUTT/NUDIX FAMILY PROTEIN FROM STREPTOCOCCUS TITLE 2 PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUTT/NUDIX FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 ATCC: BAA-334; SOURCE 6 GENE: SP_0119; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVE; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG KEYWDS MUTT/NUDIX FAMILY PROTEIN, STREPTOCOCCUS PNEUMONIAE, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,T.A.BINKOWSKI,M.ZHOU,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 2PQV 1 VERSN REVDAT 2 24-FEB-09 2PQV 1 VERSN REVDAT 1 05-JUN-07 2PQV 0 JRNL AUTH C.CHANG,T.A.BINKOWSKI,M.ZHOU,J.ABDULLAH,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF MUTT/NUDIX FAMILY PROTEIN FROM JRNL TITL 2 STREPTOCOCCUS PNEUMONIAE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 34812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1833 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2414 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2434 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 414 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.339 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2537 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3452 ; 1.352 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 9.123 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;34.776 ;25.672 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 456 ;12.148 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.705 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 393 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1932 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1133 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1708 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 283 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 79 ; 0.279 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 52 ; 0.179 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1587 ; 1.113 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2490 ; 1.654 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1071 ; 2.815 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 956 ; 3.963 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 20 REMARK 3 RESIDUE RANGE : A 43 A 51 REMARK 3 RESIDUE RANGE : A 72 A 94 REMARK 3 RESIDUE RANGE : A 122 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4140 24.5450 8.1370 REMARK 3 T TENSOR REMARK 3 T11: -0.0407 T22: -0.0397 REMARK 3 T33: -0.0314 T12: 0.0044 REMARK 3 T13: 0.0200 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.0155 L22: 0.8588 REMARK 3 L33: 1.8036 L12: -0.2736 REMARK 3 L13: -0.0256 L23: -0.0175 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.0429 S13: -0.1963 REMARK 3 S21: 0.0012 S22: 0.0092 S23: -0.0918 REMARK 3 S31: 0.0893 S32: 0.1161 S33: -0.0116 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 42 REMARK 3 RESIDUE RANGE : A 52 A 71 REMARK 3 RESIDUE RANGE : A 95 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4090 29.5300 -2.1680 REMARK 3 T TENSOR REMARK 3 T11: -0.0407 T22: 0.0719 REMARK 3 T33: -0.0827 T12: -0.0243 REMARK 3 T13: 0.0168 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.3857 L22: 2.2058 REMARK 3 L33: 1.4363 L12: -0.3814 REMARK 3 L13: 0.3637 L23: 0.4526 REMARK 3 S TENSOR REMARK 3 S11: 0.0584 S12: 0.3310 S13: -0.0287 REMARK 3 S21: -0.0253 S22: 0.0250 S23: -0.1551 REMARK 3 S31: 0.0336 S32: 0.2797 S33: -0.0833 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 20 REMARK 3 RESIDUE RANGE : B 43 B 51 REMARK 3 RESIDUE RANGE : B 72 B 94 REMARK 3 RESIDUE RANGE : B 122 B 150 REMARK 3 ORIGIN FOR THE GROUP (A): -6.5600 34.6580 17.2910 REMARK 3 T TENSOR REMARK 3 T11: -0.0159 T22: -0.0227 REMARK 3 T33: -0.0568 T12: 0.0075 REMARK 3 T13: 0.0074 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.9762 L22: 0.7933 REMARK 3 L33: 0.1371 L12: -0.1814 REMARK 3 L13: -0.3591 L23: 0.0199 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.1321 S13: 0.0328 REMARK 3 S21: 0.0952 S22: 0.0276 S23: 0.0068 REMARK 3 S31: -0.1229 S32: -0.0584 S33: -0.0167 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 42 REMARK 3 RESIDUE RANGE : B 52 B 71 REMARK 3 RESIDUE RANGE : B 95 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): -19.6590 29.3480 22.6390 REMARK 3 T TENSOR REMARK 3 T11: -0.0268 T22: 0.0820 REMARK 3 T33: -0.0222 T12: 0.0243 REMARK 3 T13: 0.0186 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 1.6426 L22: 3.3629 REMARK 3 L33: 0.5943 L12: -1.4871 REMARK 3 L13: 0.0121 L23: -0.6391 REMARK 3 S TENSOR REMARK 3 S11: -0.1727 S12: -0.3927 S13: -0.0284 REMARK 3 S21: 0.3377 S22: 0.2171 S23: 0.1521 REMARK 3 S31: -0.1074 S32: -0.1552 S33: -0.0443 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PQV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB042688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36665 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.23100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M AMMONIUM CHLORIDE, REMARK 280 PH 6.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.33750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 151 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 130 O HOH B 263 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 131 N - CA - C ANGL. DEV. = -18.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 -118.35 54.05 REMARK 500 ASP B 11 -111.95 45.45 REMARK 500 VAL B 131 -45.12 126.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 130 VAL A 131 -121.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 283 DISTANCE = 8.12 ANGSTROMS REMARK 525 HOH A 291 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A 307 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH A 334 DISTANCE = 5.31 ANGSTROMS REMARK 525 HOH A 337 DISTANCE = 5.38 ANGSTROMS REMARK 525 HOH A 345 DISTANCE = 5.38 ANGSTROMS REMARK 525 HOH A 349 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH B 359 DISTANCE = 5.12 ANGSTROMS REMARK 525 HOH B 394 DISTANCE = 5.23 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC80193 RELATED DB: TARGETDB DBREF 2PQV A 1 151 UNP Q97T37 Q97T37_STRPN 1 151 DBREF 2PQV B 1 151 UNP Q97T37 Q97T37_STRPN 1 151 SEQADV 2PQV SER A -2 UNP Q97T37 CLONING ARTIFACT SEQADV 2PQV ASN A -1 UNP Q97T37 CLONING ARTIFACT SEQADV 2PQV ALA A 0 UNP Q97T37 CLONING ARTIFACT SEQADV 2PQV MSE A 1 UNP Q97T37 MET 1 MODIFIED RESIDUE SEQADV 2PQV MSE A 106 UNP Q97T37 MET 106 MODIFIED RESIDUE SEQADV 2PQV SER B -2 UNP Q97T37 CLONING ARTIFACT SEQADV 2PQV ASN B -1 UNP Q97T37 CLONING ARTIFACT SEQADV 2PQV ALA B 0 UNP Q97T37 CLONING ARTIFACT SEQADV 2PQV MSE B 1 UNP Q97T37 MET 1 MODIFIED RESIDUE SEQADV 2PQV MSE B 106 UNP Q97T37 MET 106 MODIFIED RESIDUE SEQRES 1 A 154 SER ASN ALA MSE THR GLN GLN ASP PHE ARG THR LYS VAL SEQRES 2 A 154 ASP ASN THR VAL PHE GLY VAL ARG ALA THR ALA LEU ILE SEQRES 3 A 154 VAL GLN ASN HIS LYS LEU LEU VAL THR LYS ASP LYS GLY SEQRES 4 A 154 LYS TYR TYR THR ILE GLY GLY ALA ILE GLN VAL ASN GLU SEQRES 5 A 154 SER THR GLU ASP ALA VAL VAL ARG GLU VAL LYS GLU GLU SEQRES 6 A 154 LEU GLY VAL LYS ALA GLN ALA GLY GLN LEU ALA PHE VAL SEQRES 7 A 154 VAL GLU ASN ARG PHE GLU VAL ASP GLY VAL SER TYR HIS SEQRES 8 A 154 ASN ILE GLU PHE HIS TYR LEU VAL ASP LEU LEU GLU ASP SEQRES 9 A 154 ALA PRO LEU THR MSE GLN GLU ASP GLU LYS ARG GLN PRO SEQRES 10 A 154 CYS GLU TRP ILE ASP LEU ASP LYS LEU GLN ASN ILE GLN SEQRES 11 A 154 LEU VAL PRO VAL PHE LEU LYS THR ALA LEU PRO ASP TRP SEQRES 12 A 154 GLU GLY GLN LEU ARG HIS ILE HIS LEU GLU GLU SEQRES 1 B 154 SER ASN ALA MSE THR GLN GLN ASP PHE ARG THR LYS VAL SEQRES 2 B 154 ASP ASN THR VAL PHE GLY VAL ARG ALA THR ALA LEU ILE SEQRES 3 B 154 VAL GLN ASN HIS LYS LEU LEU VAL THR LYS ASP LYS GLY SEQRES 4 B 154 LYS TYR TYR THR ILE GLY GLY ALA ILE GLN VAL ASN GLU SEQRES 5 B 154 SER THR GLU ASP ALA VAL VAL ARG GLU VAL LYS GLU GLU SEQRES 6 B 154 LEU GLY VAL LYS ALA GLN ALA GLY GLN LEU ALA PHE VAL SEQRES 7 B 154 VAL GLU ASN ARG PHE GLU VAL ASP GLY VAL SER TYR HIS SEQRES 8 B 154 ASN ILE GLU PHE HIS TYR LEU VAL ASP LEU LEU GLU ASP SEQRES 9 B 154 ALA PRO LEU THR MSE GLN GLU ASP GLU LYS ARG GLN PRO SEQRES 10 B 154 CYS GLU TRP ILE ASP LEU ASP LYS LEU GLN ASN ILE GLN SEQRES 11 B 154 LEU VAL PRO VAL PHE LEU LYS THR ALA LEU PRO ASP TRP SEQRES 12 B 154 GLU GLY GLN LEU ARG HIS ILE HIS LEU GLU GLU MODRES 2PQV MSE A 1 MET SELENOMETHIONINE MODRES 2PQV MSE A 106 MET SELENOMETHIONINE MODRES 2PQV MSE B 1 MET SELENOMETHIONINE MODRES 2PQV MSE B 106 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 106 8 HET MSE B 1 8 HET MSE B 106 8 HET PO4 B 201 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *414(H2 O) HELIX 1 1 SER A 50 GLY A 64 1 15 HELIX 2 2 ASP A 121 ILE A 126 5 6 HELIX 3 3 PHE A 132 LEU A 137 1 6 HELIX 4 4 SER B 50 GLY B 64 1 15 HELIX 5 5 ASP B 121 ILE B 126 5 6 HELIX 6 6 PHE B 132 LEU B 137 1 6 SHEET 1 A 3 ARG A 7 VAL A 10 0 SHEET 2 A 3 THR A 13 ALA A 21 -1 O PHE A 15 N THR A 8 SHEET 3 A 3 ILE A 41 ALA A 44 -1 O ILE A 41 N ALA A 21 SHEET 1 B 5 ARG A 7 VAL A 10 0 SHEET 2 B 5 THR A 13 ALA A 21 -1 O PHE A 15 N THR A 8 SHEET 3 B 5 VAL A 85 LEU A 98 1 O PHE A 92 N THR A 20 SHEET 4 B 5 ALA A 67 VAL A 82 -1 N GLN A 71 O LEU A 95 SHEET 5 B 5 ARG A 145 ILE A 147 1 O ILE A 147 N VAL A 75 SHEET 1 C 4 VAL A 24 GLN A 25 0 SHEET 2 C 4 LYS A 28 ASP A 34 -1 O LYS A 28 N GLN A 25 SHEET 3 C 4 LYS A 111 ASP A 119 -1 O ILE A 118 N LEU A 29 SHEET 4 C 4 THR A 105 GLU A 108 -1 N MSE A 106 O GLN A 113 SHEET 1 D 4 VAL A 24 GLN A 25 0 SHEET 2 D 4 LYS A 28 ASP A 34 -1 O LYS A 28 N GLN A 25 SHEET 3 D 4 LYS A 37 TYR A 39 -1 O TYR A 39 N THR A 32 SHEET 4 D 4 LEU A 128 VAL A 129 1 O VAL A 129 N TYR A 38 SHEET 1 E 3 ARG B 7 VAL B 10 0 SHEET 2 E 3 THR B 13 ALA B 21 -1 O THR B 13 N VAL B 10 SHEET 3 E 3 ILE B 41 ALA B 44 -1 O ILE B 41 N ALA B 21 SHEET 1 F 5 ARG B 7 VAL B 10 0 SHEET 2 F 5 THR B 13 ALA B 21 -1 O THR B 13 N VAL B 10 SHEET 3 F 5 VAL B 85 LEU B 98 1 O TYR B 94 N THR B 20 SHEET 4 F 5 ALA B 67 VAL B 82 -1 N PHE B 80 O TYR B 87 SHEET 5 F 5 ARG B 145 GLU B 150 1 O LEU B 149 N GLU B 77 SHEET 1 G 3 VAL B 24 GLN B 25 0 SHEET 2 G 3 LYS B 28 ASP B 34 -1 O LYS B 28 N GLN B 25 SHEET 3 G 3 LYS B 37 TYR B 39 -1 O LYS B 37 N ASP B 34 SHEET 1 H 4 VAL B 24 GLN B 25 0 SHEET 2 H 4 LYS B 28 ASP B 34 -1 O LYS B 28 N GLN B 25 SHEET 3 H 4 LYS B 111 ASP B 119 -1 O GLU B 116 N VAL B 31 SHEET 4 H 4 THR B 105 GLU B 108 -1 N MSE B 106 O GLN B 113 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C THR A 105 N MSE A 106 1555 1555 1.34 LINK C MSE A 106 N GLN A 107 1555 1555 1.32 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N THR B 2 1555 1555 1.32 LINK C THR B 105 N MSE B 106 1555 1555 1.32 LINK C MSE B 106 N GLN B 107 1555 1555 1.33 CISPEP 1 VAL A 129 PRO A 130 0 2.02 CISPEP 2 VAL B 129 PRO B 130 0 7.98 SITE 1 AC1 7 HIS A 146 HOH A 218 GLN B 71 LEU B 72 SITE 2 AC1 7 HOH B 205 HOH B 216 HOH B 217 CRYST1 49.321 64.675 49.449 90.00 107.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020275 0.000000 0.006204 0.00000 SCALE2 0.000000 0.015462 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021148 0.00000 HETATM 1 N MSE A 1 18.063 45.736 17.593 1.00 26.72 N ANISOU 1 N MSE A 1 3561 3135 3454 102 -54 -166 N HETATM 2 CA MSE A 1 18.192 44.623 18.587 1.00 26.77 C ANISOU 2 CA MSE A 1 3501 3179 3490 85 -29 -142 C HETATM 3 C MSE A 1 17.664 43.303 18.041 1.00 25.13 C ANISOU 3 C MSE A 1 3283 2976 3289 111 -52 -142 C HETATM 4 O MSE A 1 16.650 43.280 17.343 1.00 24.86 O ANISOU 4 O MSE A 1 3165 2952 3329 120 -17 -157 O HETATM 5 CB MSE A 1 17.451 44.953 19.887 1.00 28.31 C ANISOU 5 CB MSE A 1 3691 3365 3700 98 -16 -149 C HETATM 6 CG MSE A 1 17.773 46.323 20.467 1.00 32.75 C ANISOU 6 CG MSE A 1 4235 3957 4251 98 -146 -158 C HETATM 7 SE MSE A 1 19.136 46.306 21.867 1.00 48.02 SE ANISOU 7 SE MSE A 1 6159 5826 6257 396 -244 132 SE HETATM 8 CE MSE A 1 20.654 45.574 20.880 1.00 41.62 C ANISOU 8 CE MSE A 1 5289 5067 5458 211 -96 -120 C