data_2PR1 # _entry.id 2PR1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2PR1 RCSB RCSB042694 WWPDB D_1000042694 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC1310 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PR1 _pdbx_database_status.recvd_initial_deposition_date 2007-05-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Minasov, G.' 1 'Shuvalova, L.' 2 'Kiryukhina, O.' 3 'Vorontsov, I.I.' 4 'Collart, F.R.' 5 'Joachimiak, A.' 6 'Anderson, W.F.' 7 'Midwest Center for Structural Genomics (MCSG)' 8 # _citation.id primary _citation.title 'Crystal structure of the Bacillus subtilis N-acetyltransferase YlbP protein in complex with Coenzyme-A.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Minasov, G.' 1 ? primary 'Shuvalova, L.' 2 ? primary 'Kiryukhina, O.' 3 ? primary 'Vorontsov, I.I.' 4 ? primary 'Collart, F.R.' 5 ? primary 'Joachimiak, A.' 6 ? primary 'Anderson, W.F.' 7 ? # _cell.entry_id 2PR1 _cell.length_a 148.572 _cell.length_b 148.572 _cell.length_c 102.290 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PR1 _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized N-acetyltransferase ylbP' 19337.018 2 2.3.1.- ? ? ? 2 branched man 'beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose' 342.297 2 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 4 non-polymer syn 'COENZYME A' 767.534 2 ? ? ? ? 5 non-polymer syn 'COBALT (II) ION' 58.933 2 ? ? ? ? 6 water nat water 18.015 23 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name sucrose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SNAMTKVERLLINYKTLEEFKKFKEYGIQELSMLEELQDNIIENDSTSPFYGIYFGDKLVARMSLYQVNGKSNPYFDNRQ DYLELWKLEVLPGYQNRGYGRALVEFAKSFKMPIRTNPRMKSAEFWNKMNFKTVKYDMARDKGEDPLIWHPDMDREMTPG ESA ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMTKVERLLINYKTLEEFKKFKEYGIQELSMLEELQDNIIENDSTSPFYGIYFGDKLVARMSLYQVNGKSNPYFDNRQ DYLELWKLEVLPGYQNRGYGRALVEFAKSFKMPIRTNPRMKSAEFWNKMNFKTVKYDMARDKGEDPLIWHPDMDREMTPG ESA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC1310 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MET n 1 5 THR n 1 6 LYS n 1 7 VAL n 1 8 GLU n 1 9 ARG n 1 10 LEU n 1 11 LEU n 1 12 ILE n 1 13 ASN n 1 14 TYR n 1 15 LYS n 1 16 THR n 1 17 LEU n 1 18 GLU n 1 19 GLU n 1 20 PHE n 1 21 LYS n 1 22 LYS n 1 23 PHE n 1 24 LYS n 1 25 GLU n 1 26 TYR n 1 27 GLY n 1 28 ILE n 1 29 GLN n 1 30 GLU n 1 31 LEU n 1 32 SER n 1 33 MET n 1 34 LEU n 1 35 GLU n 1 36 GLU n 1 37 LEU n 1 38 GLN n 1 39 ASP n 1 40 ASN n 1 41 ILE n 1 42 ILE n 1 43 GLU n 1 44 ASN n 1 45 ASP n 1 46 SER n 1 47 THR n 1 48 SER n 1 49 PRO n 1 50 PHE n 1 51 TYR n 1 52 GLY n 1 53 ILE n 1 54 TYR n 1 55 PHE n 1 56 GLY n 1 57 ASP n 1 58 LYS n 1 59 LEU n 1 60 VAL n 1 61 ALA n 1 62 ARG n 1 63 MET n 1 64 SER n 1 65 LEU n 1 66 TYR n 1 67 GLN n 1 68 VAL n 1 69 ASN n 1 70 GLY n 1 71 LYS n 1 72 SER n 1 73 ASN n 1 74 PRO n 1 75 TYR n 1 76 PHE n 1 77 ASP n 1 78 ASN n 1 79 ARG n 1 80 GLN n 1 81 ASP n 1 82 TYR n 1 83 LEU n 1 84 GLU n 1 85 LEU n 1 86 TRP n 1 87 LYS n 1 88 LEU n 1 89 GLU n 1 90 VAL n 1 91 LEU n 1 92 PRO n 1 93 GLY n 1 94 TYR n 1 95 GLN n 1 96 ASN n 1 97 ARG n 1 98 GLY n 1 99 TYR n 1 100 GLY n 1 101 ARG n 1 102 ALA n 1 103 LEU n 1 104 VAL n 1 105 GLU n 1 106 PHE n 1 107 ALA n 1 108 LYS n 1 109 SER n 1 110 PHE n 1 111 LYS n 1 112 MET n 1 113 PRO n 1 114 ILE n 1 115 ARG n 1 116 THR n 1 117 ASN n 1 118 PRO n 1 119 ARG n 1 120 MET n 1 121 LYS n 1 122 SER n 1 123 ALA n 1 124 GLU n 1 125 PHE n 1 126 TRP n 1 127 ASN n 1 128 LYS n 1 129 MET n 1 130 ASN n 1 131 PHE n 1 132 LYS n 1 133 THR n 1 134 VAL n 1 135 LYS n 1 136 TYR n 1 137 ASP n 1 138 MET n 1 139 ALA n 1 140 ARG n 1 141 ASP n 1 142 LYS n 1 143 GLY n 1 144 GLU n 1 145 ASP n 1 146 PRO n 1 147 LEU n 1 148 ILE n 1 149 TRP n 1 150 HIS n 1 151 PRO n 1 152 ASP n 1 153 MET n 1 154 ASP n 1 155 ARG n 1 156 GLU n 1 157 MET n 1 158 THR n 1 159 PRO n 1 160 GLY n 1 161 GLU n 1 162 SER n 1 163 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene 'ylbP, BSU15100' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 168 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YLBP_BACSU _struct_ref.pdbx_db_accession O34468 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTKVERLLINYKTLEEFKKFKEYGIQELSMLEELQDNIIENDSTSPFYGIYFGDKLVARMSLYQVNGKSNPYFDNRQDYL ELWKLEVLPGYQNRGYGRALVEFAKSFKMPIRTNPRMKSAEFWNKMNFKTVKYDMARDKGEDPLIWHPDMDREMTPGESA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2PR1 A 4 ? 163 ? O34468 1 ? 160 ? 1 160 2 1 2PR1 B 4 ? 163 ? O34468 1 ? 160 ? 1 160 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2PR1 SER A 1 ? UNP O34468 ? ? 'cloning artifact' -2 1 1 2PR1 ASN A 2 ? UNP O34468 ? ? 'cloning artifact' -1 2 1 2PR1 ALA A 3 ? UNP O34468 ? ? 'cloning artifact' 0 3 2 2PR1 SER B 1 ? UNP O34468 ? ? 'cloning artifact' -2 4 2 2PR1 ASN B 2 ? UNP O34468 ? ? 'cloning artifact' -1 5 2 2PR1 ALA B 3 ? UNP O34468 ? ? 'cloning artifact' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 COA non-polymer . 'COENZYME A' ? 'C21 H36 N7 O16 P3 S' 767.534 FRU 'D-saccharide, beta linking' . beta-D-fructofuranose ? 'C6 H12 O6' 180.156 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2PR1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.21 _exptl_crystal.density_percent_sol 70.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;0.01M Cobalt chloride, 0.25M Sodium chloride, 0.1M MES, 1.8M Ammonium sulfate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-03-02 _diffrn_detector.details 'K-B pair biomorph mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97931 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97931 # _reflns.entry_id 2PR1 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 3.2 _reflns.d_resolution_low 30.0 _reflns.number_all 11325 _reflns.number_obs 11325 _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.116 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.20 _reflns_shell.d_res_low 3.31 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.477 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.9 _reflns_shell.pdbx_redundancy 6.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1104 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2PR1 _refine.ls_number_reflns_obs 10209 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 3.20 _refine.ls_percent_reflns_obs 98.94 _refine.ls_R_factor_obs 0.21934 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21548 _refine.ls_R_factor_R_free 0.25462 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.7 _refine.ls_number_reflns_R_free 1101 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.916 _refine.correlation_coeff_Fo_to_Fc_free 0.880 _refine.B_iso_mean 76.773 _refine.aniso_B[1][1] 1.63 _refine.aniso_B[2][2] 1.63 _refine.aniso_B[3][3] -2.45 _refine.aniso_B[1][2] 0.82 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.437 _refine.overall_SU_ML 0.292 _refine.overall_SU_B 32.411 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2541 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 154 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 2718 _refine_hist.d_res_high 3.20 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 2761 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.560 2.029 ? 3735 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.727 5.000 ? 299 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.896 24.203 ? 138 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.083 15.000 ? 493 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.488 15.000 ? 17 'X-RAY DIFFRACTION' ? r_chiral_restr 0.108 0.200 ? 373 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 2029 'X-RAY DIFFRACTION' ? r_nbd_refined 0.217 0.200 ? 1184 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.316 0.200 ? 1895 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.149 0.200 ? 102 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.212 0.200 ? 59 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.191 0.200 ? 3 'X-RAY DIFFRACTION' ? r_mcbond_it 0.797 1.500 ? 1545 'X-RAY DIFFRACTION' ? r_mcangle_it 1.305 2.000 ? 2422 'X-RAY DIFFRACTION' ? r_scbond_it 2.083 3.000 ? 1395 'X-RAY DIFFRACTION' ? r_scangle_it 3.518 4.500 ? 1313 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.20 _refine_ls_shell.d_res_low 3.28 _refine_ls_shell.number_reflns_R_work 731 _refine_ls_shell.R_factor_R_work 0.249 _refine_ls_shell.percent_reflns_obs 99.51 _refine_ls_shell.R_factor_R_free 0.298 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 81 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 731 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2PR1 _struct.title 'Crystal structure of the Bacillus subtilis N-acetyltransferase YlbP protein in complex with Coenzyme-A' _struct.pdbx_descriptor 'Uncharacterized N-acetyltransferase ylbP (E.C.2.3.1.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PR1 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;N-acetyltransferase, YibP protein, Coenzyme A, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 3 ? J N N 4 ? K N N 6 ? L N N 6 ? # _struct_biol.id 1 _struct_biol.details ;The biological assembly is a dimer generated from the peptide chains A and B of the asymmetric unit. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 13 ? LYS A 21 ? ASN A 10 LYS A 18 1 ? 9 HELX_P HELX_P2 2 GLY A 27 ? ASN A 40 ? GLY A 24 ASN A 37 1 ? 14 HELX_P HELX_P3 3 ILE A 41 ? ASN A 44 ? ILE A 38 ASN A 41 5 ? 4 HELX_P HELX_P4 4 PHE A 76 ? GLN A 80 ? PHE A 73 GLN A 77 5 ? 5 HELX_P HELX_P5 5 GLY A 98 ? SER A 109 ? GLY A 95 SER A 106 1 ? 12 HELX_P HELX_P6 6 ARG A 119 ? LYS A 121 ? ARG A 116 LYS A 118 5 ? 3 HELX_P HELX_P7 7 SER A 122 ? MET A 129 ? SER A 119 MET A 126 1 ? 8 HELX_P HELX_P8 8 ASP A 137 ? LYS A 142 ? ASP A 134 LYS A 139 1 ? 6 HELX_P HELX_P9 9 ASN B 13 ? LYS B 21 ? ASN B 10 LYS B 18 1 ? 9 HELX_P HELX_P10 10 GLY B 27 ? ASP B 39 ? GLY B 24 ASP B 36 1 ? 13 HELX_P HELX_P11 11 PHE B 76 ? GLN B 80 ? PHE B 73 GLN B 77 5 ? 5 HELX_P HELX_P12 12 GLY B 98 ? SER B 109 ? GLY B 95 SER B 106 1 ? 12 HELX_P HELX_P13 13 ARG B 119 ? LYS B 121 ? ARG B 116 LYS B 118 5 ? 3 HELX_P HELX_P14 14 SER B 122 ? MET B 129 ? SER B 119 MET B 126 1 ? 8 HELX_P HELX_P15 15 ASP B 137 ? LYS B 142 ? ASP B 134 LYS B 139 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C GLC . C1 ? ? ? 1_555 C FRU . O2 ? ? C GLC 1 C FRU 2 1_555 ? ? ? ? ? ? ? 1.421 sing ? covale2 covale both ? D GLC . C1 ? ? ? 1_555 D FRU . O2 ? ? D GLC 1 D FRU 2 1_555 ? ? ? ? ? ? ? 1.423 sing ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 8 ? ILE A 12 ? GLU A 5 ILE A 9 A 2 SER A 46 ? PHE A 55 ? SER A 43 PHE A 52 A 3 LYS A 58 ? VAL A 68 ? LYS A 55 VAL A 65 A 4 TYR A 82 ? VAL A 90 ? TYR A 79 VAL A 87 A 5 ILE A 114 ? THR A 116 ? ILE A 111 THR A 113 A 6 LEU A 147 ? TRP A 149 ? LEU A 144 TRP A 146 A 7 LYS A 132 ? THR A 133 ? LYS A 129 THR A 130 B 1 GLU B 8 ? ARG B 9 ? GLU B 5 ARG B 6 B 2 PHE B 50 ? PHE B 55 ? PHE B 47 PHE B 52 B 3 LYS B 58 ? VAL B 68 ? LYS B 55 VAL B 65 B 4 TYR B 82 ? VAL B 90 ? TYR B 79 VAL B 87 B 5 ILE B 114 ? THR B 116 ? ILE B 111 THR B 113 B 6 LEU B 147 ? TRP B 149 ? LEU B 144 TRP B 146 B 7 LYS B 132 ? THR B 133 ? LYS B 129 THR B 130 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 12 ? N ILE A 9 O SER A 46 ? O SER A 43 A 2 3 N TYR A 51 ? N TYR A 48 O MET A 63 ? O MET A 60 A 3 4 N SER A 64 ? N SER A 61 O TRP A 86 ? O TRP A 83 A 4 5 N LEU A 83 ? N LEU A 80 O ARG A 115 ? O ARG A 112 A 5 6 N ILE A 114 ? N ILE A 111 O TRP A 149 ? O TRP A 146 A 6 7 O ILE A 148 ? O ILE A 145 N LYS A 132 ? N LYS A 129 B 1 2 N GLU B 8 ? N GLU B 5 O GLY B 52 ? O GLY B 49 B 2 3 N PHE B 55 ? N PHE B 52 O LYS B 58 ? O LYS B 55 B 3 4 N SER B 64 ? N SER B 61 O TRP B 86 ? O TRP B 83 B 4 5 N LEU B 85 ? N LEU B 82 O ARG B 115 ? O ARG B 112 B 5 6 N ILE B 114 ? N ILE B 111 O TRP B 149 ? O TRP B 146 B 6 7 O ILE B 148 ? O ILE B 145 N LYS B 132 ? N LYS B 129 # _database_PDB_matrix.entry_id 2PR1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2PR1 _atom_sites.fract_transf_matrix[1][1] 0.006731 _atom_sites.fract_transf_matrix[1][2] 0.003886 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007772 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009776 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 THR 5 2 2 THR THR A . n A 1 6 LYS 6 3 3 LYS LYS A . n A 1 7 VAL 7 4 4 VAL VAL A . n A 1 8 GLU 8 5 5 GLU GLU A . n A 1 9 ARG 9 6 6 ARG ARG A . n A 1 10 LEU 10 7 7 LEU LEU A . n A 1 11 LEU 11 8 8 LEU LEU A . n A 1 12 ILE 12 9 9 ILE ILE A . n A 1 13 ASN 13 10 10 ASN ASN A . n A 1 14 TYR 14 11 11 TYR TYR A . n A 1 15 LYS 15 12 12 LYS LYS A . n A 1 16 THR 16 13 13 THR THR A . n A 1 17 LEU 17 14 14 LEU LEU A . n A 1 18 GLU 18 15 15 GLU GLU A . n A 1 19 GLU 19 16 16 GLU GLU A . n A 1 20 PHE 20 17 17 PHE PHE A . n A 1 21 LYS 21 18 18 LYS LYS A . n A 1 22 LYS 22 19 19 LYS LYS A . n A 1 23 PHE 23 20 20 PHE PHE A . n A 1 24 LYS 24 21 21 LYS LYS A . n A 1 25 GLU 25 22 22 GLU GLU A . n A 1 26 TYR 26 23 23 TYR TYR A . n A 1 27 GLY 27 24 24 GLY GLY A . n A 1 28 ILE 28 25 25 ILE ILE A . n A 1 29 GLN 29 26 26 GLN GLN A . n A 1 30 GLU 30 27 27 GLU GLU A . n A 1 31 LEU 31 28 28 LEU LEU A . n A 1 32 SER 32 29 29 SER SER A . n A 1 33 MET 33 30 30 MET MET A . n A 1 34 LEU 34 31 31 LEU LEU A . n A 1 35 GLU 35 32 32 GLU GLU A . n A 1 36 GLU 36 33 33 GLU GLU A . n A 1 37 LEU 37 34 34 LEU LEU A . n A 1 38 GLN 38 35 35 GLN GLN A . n A 1 39 ASP 39 36 36 ASP ASP A . n A 1 40 ASN 40 37 37 ASN ASN A . n A 1 41 ILE 41 38 38 ILE ILE A . n A 1 42 ILE 42 39 39 ILE ILE A . n A 1 43 GLU 43 40 40 GLU GLU A . n A 1 44 ASN 44 41 41 ASN ASN A . n A 1 45 ASP 45 42 42 ASP ASP A . n A 1 46 SER 46 43 43 SER SER A . n A 1 47 THR 47 44 44 THR THR A . n A 1 48 SER 48 45 45 SER SER A . n A 1 49 PRO 49 46 46 PRO PRO A . n A 1 50 PHE 50 47 47 PHE PHE A . n A 1 51 TYR 51 48 48 TYR TYR A . n A 1 52 GLY 52 49 49 GLY GLY A . n A 1 53 ILE 53 50 50 ILE ILE A . n A 1 54 TYR 54 51 51 TYR TYR A . n A 1 55 PHE 55 52 52 PHE PHE A . n A 1 56 GLY 56 53 53 GLY GLY A . n A 1 57 ASP 57 54 54 ASP ASP A . n A 1 58 LYS 58 55 55 LYS LYS A . n A 1 59 LEU 59 56 56 LEU LEU A . n A 1 60 VAL 60 57 57 VAL VAL A . n A 1 61 ALA 61 58 58 ALA ALA A . n A 1 62 ARG 62 59 59 ARG ARG A . n A 1 63 MET 63 60 60 MET MET A . n A 1 64 SER 64 61 61 SER SER A . n A 1 65 LEU 65 62 62 LEU LEU A . n A 1 66 TYR 66 63 63 TYR TYR A . n A 1 67 GLN 67 64 64 GLN GLN A . n A 1 68 VAL 68 65 65 VAL VAL A . n A 1 69 ASN 69 66 66 ASN ASN A . n A 1 70 GLY 70 67 67 GLY GLY A . n A 1 71 LYS 71 68 68 LYS LYS A . n A 1 72 SER 72 69 69 SER SER A . n A 1 73 ASN 73 70 70 ASN ASN A . n A 1 74 PRO 74 71 71 PRO PRO A . n A 1 75 TYR 75 72 72 TYR TYR A . n A 1 76 PHE 76 73 73 PHE PHE A . n A 1 77 ASP 77 74 74 ASP ASP A . n A 1 78 ASN 78 75 75 ASN ASN A . n A 1 79 ARG 79 76 76 ARG ARG A . n A 1 80 GLN 80 77 77 GLN GLN A . n A 1 81 ASP 81 78 78 ASP ASP A . n A 1 82 TYR 82 79 79 TYR TYR A . n A 1 83 LEU 83 80 80 LEU LEU A . n A 1 84 GLU 84 81 81 GLU GLU A . n A 1 85 LEU 85 82 82 LEU LEU A . n A 1 86 TRP 86 83 83 TRP TRP A . n A 1 87 LYS 87 84 84 LYS LYS A . n A 1 88 LEU 88 85 85 LEU LEU A . n A 1 89 GLU 89 86 86 GLU GLU A . n A 1 90 VAL 90 87 87 VAL VAL A . n A 1 91 LEU 91 88 88 LEU LEU A . n A 1 92 PRO 92 89 89 PRO PRO A . n A 1 93 GLY 93 90 90 GLY GLY A . n A 1 94 TYR 94 91 91 TYR TYR A . n A 1 95 GLN 95 92 92 GLN GLN A . n A 1 96 ASN 96 93 93 ASN ASN A . n A 1 97 ARG 97 94 94 ARG ARG A . n A 1 98 GLY 98 95 95 GLY GLY A . n A 1 99 TYR 99 96 96 TYR TYR A . n A 1 100 GLY 100 97 97 GLY GLY A . n A 1 101 ARG 101 98 98 ARG ARG A . n A 1 102 ALA 102 99 99 ALA ALA A . n A 1 103 LEU 103 100 100 LEU LEU A . n A 1 104 VAL 104 101 101 VAL VAL A . n A 1 105 GLU 105 102 102 GLU GLU A . n A 1 106 PHE 106 103 103 PHE PHE A . n A 1 107 ALA 107 104 104 ALA ALA A . n A 1 108 LYS 108 105 105 LYS LYS A . n A 1 109 SER 109 106 106 SER SER A . n A 1 110 PHE 110 107 107 PHE PHE A . n A 1 111 LYS 111 108 108 LYS LYS A . n A 1 112 MET 112 109 109 MET MET A . n A 1 113 PRO 113 110 110 PRO PRO A . n A 1 114 ILE 114 111 111 ILE ILE A . n A 1 115 ARG 115 112 112 ARG ARG A . n A 1 116 THR 116 113 113 THR THR A . n A 1 117 ASN 117 114 114 ASN ASN A . n A 1 118 PRO 118 115 115 PRO PRO A . n A 1 119 ARG 119 116 116 ARG ARG A . n A 1 120 MET 120 117 117 MET MET A . n A 1 121 LYS 121 118 118 LYS LYS A . n A 1 122 SER 122 119 119 SER SER A . n A 1 123 ALA 123 120 120 ALA ALA A . n A 1 124 GLU 124 121 121 GLU GLU A . n A 1 125 PHE 125 122 122 PHE PHE A . n A 1 126 TRP 126 123 123 TRP TRP A . n A 1 127 ASN 127 124 124 ASN ASN A . n A 1 128 LYS 128 125 125 LYS LYS A . n A 1 129 MET 129 126 126 MET MET A . n A 1 130 ASN 130 127 127 ASN ASN A . n A 1 131 PHE 131 128 128 PHE PHE A . n A 1 132 LYS 132 129 129 LYS LYS A . n A 1 133 THR 133 130 130 THR THR A . n A 1 134 VAL 134 131 131 VAL VAL A . n A 1 135 LYS 135 132 132 LYS LYS A . n A 1 136 TYR 136 133 133 TYR TYR A . n A 1 137 ASP 137 134 134 ASP ASP A . n A 1 138 MET 138 135 135 MET MET A . n A 1 139 ALA 139 136 136 ALA ALA A . n A 1 140 ARG 140 137 137 ARG ARG A . n A 1 141 ASP 141 138 138 ASP ASP A . n A 1 142 LYS 142 139 139 LYS LYS A . n A 1 143 GLY 143 140 140 GLY GLY A . n A 1 144 GLU 144 141 141 GLU GLU A . n A 1 145 ASP 145 142 142 ASP ASP A . n A 1 146 PRO 146 143 143 PRO PRO A . n A 1 147 LEU 147 144 144 LEU LEU A . n A 1 148 ILE 148 145 145 ILE ILE A . n A 1 149 TRP 149 146 146 TRP TRP A . n A 1 150 HIS 150 147 147 HIS HIS A . n A 1 151 PRO 151 148 148 PRO PRO A . n A 1 152 ASP 152 149 149 ASP ASP A . n A 1 153 MET 153 150 150 MET MET A . n A 1 154 ASP 154 151 151 ASP ASP A . n A 1 155 ARG 155 152 152 ARG ARG A . n A 1 156 GLU 156 153 ? ? ? A . n A 1 157 MET 157 154 ? ? ? A . n A 1 158 THR 158 155 ? ? ? A . n A 1 159 PRO 159 156 ? ? ? A . n A 1 160 GLY 160 157 ? ? ? A . n A 1 161 GLU 161 158 ? ? ? A . n A 1 162 SER 162 159 ? ? ? A . n A 1 163 ALA 163 160 ? ? ? A . n B 1 1 SER 1 -2 ? ? ? B . n B 1 2 ASN 2 -1 ? ? ? B . n B 1 3 ALA 3 0 ? ? ? B . n B 1 4 MET 4 1 ? ? ? B . n B 1 5 THR 5 2 2 THR THR B . n B 1 6 LYS 6 3 3 LYS LYS B . n B 1 7 VAL 7 4 4 VAL VAL B . n B 1 8 GLU 8 5 5 GLU GLU B . n B 1 9 ARG 9 6 6 ARG ARG B . n B 1 10 LEU 10 7 7 LEU LEU B . n B 1 11 LEU 11 8 8 LEU LEU B . n B 1 12 ILE 12 9 9 ILE ILE B . n B 1 13 ASN 13 10 10 ASN ASN B . n B 1 14 TYR 14 11 11 TYR TYR B . n B 1 15 LYS 15 12 12 LYS LYS B . n B 1 16 THR 16 13 13 THR THR B . n B 1 17 LEU 17 14 14 LEU LEU B . n B 1 18 GLU 18 15 15 GLU GLU B . n B 1 19 GLU 19 16 16 GLU GLU B . n B 1 20 PHE 20 17 17 PHE PHE B . n B 1 21 LYS 21 18 18 LYS LYS B . n B 1 22 LYS 22 19 19 LYS LYS B . n B 1 23 PHE 23 20 20 PHE PHE B . n B 1 24 LYS 24 21 21 LYS LYS B . n B 1 25 GLU 25 22 22 GLU GLU B . n B 1 26 TYR 26 23 23 TYR TYR B . n B 1 27 GLY 27 24 24 GLY GLY B . n B 1 28 ILE 28 25 25 ILE ILE B . n B 1 29 GLN 29 26 26 GLN GLN B . n B 1 30 GLU 30 27 27 GLU GLU B . n B 1 31 LEU 31 28 28 LEU LEU B . n B 1 32 SER 32 29 29 SER SER B . n B 1 33 MET 33 30 30 MET MET B . n B 1 34 LEU 34 31 31 LEU LEU B . n B 1 35 GLU 35 32 32 GLU GLU B . n B 1 36 GLU 36 33 33 GLU GLU B . n B 1 37 LEU 37 34 34 LEU LEU B . n B 1 38 GLN 38 35 35 GLN GLN B . n B 1 39 ASP 39 36 36 ASP ASP B . n B 1 40 ASN 40 37 37 ASN ASN B . n B 1 41 ILE 41 38 38 ILE ILE B . n B 1 42 ILE 42 39 39 ILE ILE B . n B 1 43 GLU 43 40 40 GLU GLU B . n B 1 44 ASN 44 41 41 ASN ASN B . n B 1 45 ASP 45 42 42 ASP ASP B . n B 1 46 SER 46 43 43 SER SER B . n B 1 47 THR 47 44 44 THR THR B . n B 1 48 SER 48 45 45 SER SER B . n B 1 49 PRO 49 46 46 PRO PRO B . n B 1 50 PHE 50 47 47 PHE PHE B . n B 1 51 TYR 51 48 48 TYR TYR B . n B 1 52 GLY 52 49 49 GLY GLY B . n B 1 53 ILE 53 50 50 ILE ILE B . n B 1 54 TYR 54 51 51 TYR TYR B . n B 1 55 PHE 55 52 52 PHE PHE B . n B 1 56 GLY 56 53 53 GLY GLY B . n B 1 57 ASP 57 54 54 ASP ASP B . n B 1 58 LYS 58 55 55 LYS LYS B . n B 1 59 LEU 59 56 56 LEU LEU B . n B 1 60 VAL 60 57 57 VAL VAL B . n B 1 61 ALA 61 58 58 ALA ALA B . n B 1 62 ARG 62 59 59 ARG ARG B . n B 1 63 MET 63 60 60 MET MET B . n B 1 64 SER 64 61 61 SER SER B . n B 1 65 LEU 65 62 62 LEU LEU B . n B 1 66 TYR 66 63 63 TYR TYR B . n B 1 67 GLN 67 64 64 GLN GLN B . n B 1 68 VAL 68 65 65 VAL VAL B . n B 1 69 ASN 69 66 66 ASN ASN B . n B 1 70 GLY 70 67 67 GLY GLY B . n B 1 71 LYS 71 68 68 LYS LYS B . n B 1 72 SER 72 69 69 SER SER B . n B 1 73 ASN 73 70 70 ASN ASN B . n B 1 74 PRO 74 71 71 PRO PRO B . n B 1 75 TYR 75 72 72 TYR TYR B . n B 1 76 PHE 76 73 73 PHE PHE B . n B 1 77 ASP 77 74 74 ASP ASP B . n B 1 78 ASN 78 75 75 ASN ASN B . n B 1 79 ARG 79 76 76 ARG ARG B . n B 1 80 GLN 80 77 77 GLN GLN B . n B 1 81 ASP 81 78 78 ASP ASP B . n B 1 82 TYR 82 79 79 TYR TYR B . n B 1 83 LEU 83 80 80 LEU LEU B . n B 1 84 GLU 84 81 81 GLU GLU B . n B 1 85 LEU 85 82 82 LEU LEU B . n B 1 86 TRP 86 83 83 TRP TRP B . n B 1 87 LYS 87 84 84 LYS LYS B . n B 1 88 LEU 88 85 85 LEU LEU B . n B 1 89 GLU 89 86 86 GLU GLU B . n B 1 90 VAL 90 87 87 VAL VAL B . n B 1 91 LEU 91 88 88 LEU LEU B . n B 1 92 PRO 92 89 89 PRO PRO B . n B 1 93 GLY 93 90 90 GLY GLY B . n B 1 94 TYR 94 91 91 TYR TYR B . n B 1 95 GLN 95 92 92 GLN GLN B . n B 1 96 ASN 96 93 93 ASN ASN B . n B 1 97 ARG 97 94 94 ARG ARG B . n B 1 98 GLY 98 95 95 GLY GLY B . n B 1 99 TYR 99 96 96 TYR TYR B . n B 1 100 GLY 100 97 97 GLY GLY B . n B 1 101 ARG 101 98 98 ARG ARG B . n B 1 102 ALA 102 99 99 ALA ALA B . n B 1 103 LEU 103 100 100 LEU LEU B . n B 1 104 VAL 104 101 101 VAL VAL B . n B 1 105 GLU 105 102 102 GLU GLU B . n B 1 106 PHE 106 103 103 PHE PHE B . n B 1 107 ALA 107 104 104 ALA ALA B . n B 1 108 LYS 108 105 105 LYS LYS B . n B 1 109 SER 109 106 106 SER SER B . n B 1 110 PHE 110 107 107 PHE PHE B . n B 1 111 LYS 111 108 108 LYS LYS B . n B 1 112 MET 112 109 109 MET MET B . n B 1 113 PRO 113 110 110 PRO PRO B . n B 1 114 ILE 114 111 111 ILE ILE B . n B 1 115 ARG 115 112 112 ARG ARG B . n B 1 116 THR 116 113 113 THR THR B . n B 1 117 ASN 117 114 114 ASN ASN B . n B 1 118 PRO 118 115 115 PRO PRO B . n B 1 119 ARG 119 116 116 ARG ARG B . n B 1 120 MET 120 117 117 MET MET B . n B 1 121 LYS 121 118 118 LYS LYS B . n B 1 122 SER 122 119 119 SER SER B . n B 1 123 ALA 123 120 120 ALA ALA B . n B 1 124 GLU 124 121 121 GLU GLU B . n B 1 125 PHE 125 122 122 PHE PHE B . n B 1 126 TRP 126 123 123 TRP TRP B . n B 1 127 ASN 127 124 124 ASN ASN B . n B 1 128 LYS 128 125 125 LYS LYS B . n B 1 129 MET 129 126 126 MET MET B . n B 1 130 ASN 130 127 127 ASN ASN B . n B 1 131 PHE 131 128 128 PHE PHE B . n B 1 132 LYS 132 129 129 LYS LYS B . n B 1 133 THR 133 130 130 THR THR B . n B 1 134 VAL 134 131 131 VAL VAL B . n B 1 135 LYS 135 132 132 LYS LYS B . n B 1 136 TYR 136 133 133 TYR TYR B . n B 1 137 ASP 137 134 134 ASP ASP B . n B 1 138 MET 138 135 135 MET MET B . n B 1 139 ALA 139 136 136 ALA ALA B . n B 1 140 ARG 140 137 137 ARG ARG B . n B 1 141 ASP 141 138 138 ASP ASP B . n B 1 142 LYS 142 139 139 LYS LYS B . n B 1 143 GLY 143 140 140 GLY GLY B . n B 1 144 GLU 144 141 141 GLU GLU B . n B 1 145 ASP 145 142 142 ASP ASP B . n B 1 146 PRO 146 143 143 PRO PRO B . n B 1 147 LEU 147 144 144 LEU LEU B . n B 1 148 ILE 148 145 145 ILE ILE B . n B 1 149 TRP 149 146 146 TRP TRP B . n B 1 150 HIS 150 147 147 HIS HIS B . n B 1 151 PRO 151 148 148 PRO PRO B . n B 1 152 ASP 152 149 149 ASP ASP B . n B 1 153 MET 153 150 150 MET MET B . n B 1 154 ASP 154 151 ? ? ? B . n B 1 155 ARG 155 152 ? ? ? B . n B 1 156 GLU 156 153 ? ? ? B . n B 1 157 MET 157 154 ? ? ? B . n B 1 158 THR 158 155 ? ? ? B . n B 1 159 PRO 159 156 ? ? ? B . n B 1 160 GLY 160 157 ? ? ? B . n B 1 161 GLU 161 158 ? ? ? B . n B 1 162 SER 162 159 ? ? ? B . n B 1 163 ALA 163 160 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 1 205 8 SO4 SO4 A . F 4 COA 1 206 3 COA COA A . G 5 CO 1 202 1 CO CO B . H 5 CO 1 203 2 CO CO B . I 3 SO4 1 204 7 SO4 SO4 B . J 4 COA 1 206 4 COA COA B . K 6 HOH 1 207 12 HOH HOH A . K 6 HOH 2 208 13 HOH HOH A . K 6 HOH 3 209 17 HOH HOH A . K 6 HOH 4 210 18 HOH HOH A . K 6 HOH 5 211 19 HOH HOH A . K 6 HOH 6 212 20 HOH HOH A . K 6 HOH 7 213 21 HOH HOH A . K 6 HOH 8 214 22 HOH HOH A . K 6 HOH 9 215 23 HOH HOH A . K 6 HOH 10 216 30 HOH HOH A . K 6 HOH 11 217 32 HOH HOH A . L 6 HOH 1 207 11 HOH HOH B . L 6 HOH 2 208 14 HOH HOH B . L 6 HOH 3 209 15 HOH HOH B . L 6 HOH 4 210 16 HOH HOH B . L 6 HOH 5 211 24 HOH HOH B . L 6 HOH 6 212 25 HOH HOH B . L 6 HOH 7 213 26 HOH HOH B . L 6 HOH 8 214 27 HOH HOH B . L 6 HOH 9 215 28 HOH HOH B . L 6 HOH 10 216 29 HOH HOH B . L 6 HOH 11 217 31 HOH HOH B . L 6 HOH 12 218 33 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_900003 _pdbx_molecule_features.name sucrose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details 'oligosaccharide with reducing-end-to-reducing-end glycosidic bond' # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_900003 C 2 PRD_900003 D # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L 2 1,2 A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5410 ? 1 MORE -59 ? 1 'SSA (A^2)' 16960 ? 2 'ABSA (A^2)' 12770 ? 2 MORE -133 ? 2 'SSA (A^2)' 31960 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 51.1450000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-05-15 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Non-polymer description' 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' entity_name_com 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_molecule_features 13 4 'Structure model' pdbx_nonpoly_scheme 14 4 'Structure model' struct_asym 15 4 'Structure model' struct_conn 16 4 'Structure model' struct_ref_seq_dif 17 4 'Structure model' struct_site 18 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.occupancy' 14 4 'Structure model' '_atom_site.type_symbol' 15 4 'Structure model' '_chem_comp.formula' 16 4 'Structure model' '_chem_comp.formula_weight' 17 4 'Structure model' '_chem_comp.id' 18 4 'Structure model' '_chem_comp.mon_nstd_flag' 19 4 'Structure model' '_chem_comp.name' 20 4 'Structure model' '_chem_comp.type' 21 4 'Structure model' '_entity.formula_weight' 22 4 'Structure model' '_entity.pdbx_description' 23 4 'Structure model' '_entity.type' 24 4 'Structure model' '_struct_asym.entity_id' 25 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 122.7367 22.8819 7.6943 -0.2143 -0.1649 0.1299 0.0443 0.3359 0.2388 17.4148 6.3773 11.7615 2.7925 2.5682 1.5690 -0.2007 -0.0520 -1.1259 -0.2661 0.0906 0.0029 0.8409 0.1317 0.1101 'X-RAY DIFFRACTION' 2 ? refined 124.1690 32.4671 8.3021 -0.2967 -0.1786 -0.0661 -0.0015 0.3219 0.2476 4.5068 2.5527 5.5636 -0.8246 0.7977 0.7635 -0.3339 0.2861 -0.2024 -0.5005 -0.1421 -0.0693 -0.0317 0.4487 0.4760 'X-RAY DIFFRACTION' 3 ? refined 128.7615 28.7173 19.0757 -0.3085 0.0227 -0.0297 0.1549 0.3106 0.3995 4.6196 6.3546 4.4399 -1.1958 0.7776 2.7421 -0.2756 -0.4250 -0.4960 0.4825 -0.0453 -0.3850 0.4508 0.5938 0.3209 'X-RAY DIFFRACTION' 4 ? refined 124.0057 36.9955 27.4286 -0.1783 0.0936 -0.0798 -0.0481 -0.0108 0.4180 12.9160 13.2852 1.6758 -12.0737 -3.7852 4.6025 -0.3649 -1.0697 -1.1757 1.2513 0.1088 0.8326 0.2306 -0.0542 0.2561 'X-RAY DIFFRACTION' 5 ? refined 131.5847 37.1154 26.8693 -0.0978 0.2184 0.0532 -0.0168 0.1171 0.2687 42.8952 11.9642 7.3178 -6.3115 -5.9644 3.3105 -0.4587 -0.1648 -1.5851 0.4353 0.0641 -1.7183 0.1750 1.4548 0.3946 'X-RAY DIFFRACTION' 6 ? refined 103.7147 44.6227 36.8293 -0.3527 -0.0781 -0.2506 0.0541 0.0748 0.2534 14.3591 12.4867 14.9517 -8.3166 6.7513 -4.9595 -0.5590 -1.5809 -0.6785 0.8697 0.6950 0.3201 -0.0823 -0.8748 -0.1360 'X-RAY DIFFRACTION' 7 ? refined 109.6321 49.0519 30.9561 -0.1640 -0.2747 -0.2365 0.0445 -0.0117 0.1972 8.1328 3.0534 7.0931 -1.7233 3.0785 1.7621 -0.2377 -0.7375 0.3799 0.3879 -0.2219 -0.4874 -0.9542 0.7985 0.4597 'X-RAY DIFFRACTION' 8 ? refined 101.0083 45.9595 22.6069 -0.3469 -0.3080 -0.4313 0.1437 0.0784 0.0408 5.5002 5.9937 8.8187 -0.1240 -0.2717 -2.4207 -0.1417 0.5917 -0.2138 -0.0875 0.0731 -0.1359 -0.1941 -0.3243 0.0686 'X-RAY DIFFRACTION' 9 ? refined 107.7453 41.2483 13.2162 -0.1166 -0.1761 -0.2028 0.0519 0.0486 0.1598 18.7457 0.2371 1.9148 -0.0915 -4.6860 0.4423 -0.3953 0.9109 -1.8736 -0.2172 -0.2509 -0.4812 0.3766 -0.2829 0.6462 'X-RAY DIFFRACTION' 10 ? refined 106.0091 47.2944 11.1407 -0.1211 -0.0284 -0.5901 -0.1127 -0.0281 0.1603 42.8856 33.5243 4.2629 -25.3514 -13.5106 7.6379 0.9255 1.7558 0.9792 -2.4989 -1.5389 -0.0389 -0.5871 0.3825 0.6134 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 4 A 22 A 25 ? 'X-RAY DIFFRACTION' ? 2 2 A 23 A 26 A 75 A 78 ? 'X-RAY DIFFRACTION' ? 3 3 A 76 A 79 A 108 A 111 ? 'X-RAY DIFFRACTION' ? 4 4 A 109 A 112 A 139 A 142 ? 'X-RAY DIFFRACTION' ? 5 5 A 140 A 143 A 152 A 155 ? 'X-RAY DIFFRACTION' ? 6 6 B 2 B 5 B 22 B 25 ? 'X-RAY DIFFRACTION' ? 7 7 B 23 B 26 B 75 B 78 ? 'X-RAY DIFFRACTION' ? 8 8 B 76 B 79 B 108 B 111 ? 'X-RAY DIFFRACTION' ? 9 9 B 109 B 112 B 139 B 142 ? 'X-RAY DIFFRACTION' ? 10 10 B 140 B 143 B 150 B 153 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 Blu-Ice 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SHARP phasing . ? 5 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT A DIMER WITH THE ASSEMBLY SHOWN IN REMARK 350 IS PROBABLY THE BIOLOGICAL UNIT OF THIS POLYPEPTIDE. SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). ; # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 121 ? ? OE1 A GLU 121 ? ? 1.397 1.252 0.145 0.011 N 2 1 CD A GLU 121 ? ? OE2 A GLU 121 ? ? 1.372 1.252 0.120 0.011 N 3 1 CG B ASP 142 ? ? OD1 B ASP 142 ? ? 1.392 1.249 0.143 0.023 N 4 1 C B MET 150 ? ? O B MET 150 ? ? 1.354 1.229 0.125 0.019 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 39 ? ? -53.11 -6.81 2 1 ASN A 75 ? ? 27.54 51.19 3 1 LYS A 118 ? ? -93.78 40.70 4 1 SER A 119 ? ? -159.80 37.64 5 1 LYS A 139 ? ? 32.40 66.09 6 1 ASP A 149 ? ? 76.56 38.77 7 1 MET A 150 ? ? -135.39 -84.92 8 1 ARG B 76 ? ? 31.43 38.00 9 1 MET B 117 ? ? -28.15 -87.86 10 1 LYS B 139 ? ? 48.70 71.22 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A GLU 153 ? A GLU 156 5 1 Y 1 A MET 154 ? A MET 157 6 1 Y 1 A THR 155 ? A THR 158 7 1 Y 1 A PRO 156 ? A PRO 159 8 1 Y 1 A GLY 157 ? A GLY 160 9 1 Y 1 A GLU 158 ? A GLU 161 10 1 Y 1 A SER 159 ? A SER 162 11 1 Y 1 A ALA 160 ? A ALA 163 12 1 Y 1 B SER -2 ? B SER 1 13 1 Y 1 B ASN -1 ? B ASN 2 14 1 Y 1 B ALA 0 ? B ALA 3 15 1 Y 1 B MET 1 ? B MET 4 16 1 Y 1 B ASP 151 ? B ASP 154 17 1 Y 1 B ARG 152 ? B ARG 155 18 1 Y 1 B GLU 153 ? B GLU 156 19 1 Y 1 B MET 154 ? B MET 157 20 1 Y 1 B THR 155 ? B THR 158 21 1 Y 1 B PRO 156 ? B PRO 159 22 1 Y 1 B GLY 157 ? B GLY 160 23 1 Y 1 B GLU 158 ? B GLU 161 24 1 Y 1 B SER 159 ? B SER 162 25 1 Y 1 B ALA 160 ? B ALA 163 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 GLC 1 C GLC 1 ? SUC 5 n C 2 FRU 2 C FRU 2 ? SUC 5 n D 2 GLC 1 D GLC 1 ? SUC 6 n D 2 FRU 2 D FRU 2 ? SUC 6 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FRU 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DFrufb FRU 'COMMON NAME' GMML 1.0 b-D-fructofuranose FRU 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Fruf FRU 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fru GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DFrufb2-1DGlcpa 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[ha122h-2b_2-5][a2122h-1a_1-5]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Fruf]{[(2+1)][a-D-Glcp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GLC 1 n 2 FRU 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 'COENZYME A' COA 5 'COBALT (II) ION' CO 6 water HOH #