HEADER TRANSFERASE 03-MAY-07 2PR1 TITLE CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS N-ACETYLTRANSFERASE YLBP TITLE 2 PROTEIN IN COMPLEX WITH COENZYME-A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED N-ACETYLTRANSFERASE YLBP; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YLBP, BSU15100; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS N-ACETYLTRANSFERASE, YIBP PROTEIN, COENZYME A, STRUCTURAL GENOMICS, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,I.I.VORONTSOV,F.R.COLLART, AUTHOR 2 A.JOACHIMIAK,W.F.ANDERSON,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (MCSG) REVDAT 5 21-FEB-24 2PR1 1 HETSYN REVDAT 4 29-JUL-20 2PR1 1 COMPND REMARK SEQADV HET REVDAT 4 2 1 HETNAM FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 13-JUL-11 2PR1 1 VERSN REVDAT 2 24-FEB-09 2PR1 1 VERSN REVDAT 1 15-MAY-07 2PR1 0 JRNL AUTH G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,I.I.VORONTSOV, JRNL AUTH 2 F.R.COLLART,A.JOACHIMIAK,W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS JRNL TITL 2 N-ACETYLTRANSFERASE YLBP PROTEIN IN COMPLEX WITH COENZYME-A. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 10209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1101 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 731 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2541 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 154 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.63000 REMARK 3 B22 (A**2) : 1.63000 REMARK 3 B33 (A**2) : -2.45000 REMARK 3 B12 (A**2) : 0.82000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.437 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.292 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.411 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2761 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3735 ; 1.560 ; 2.029 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 4.727 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;32.896 ;24.203 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 493 ;14.083 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.488 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 373 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2029 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1184 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1895 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 102 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1545 ; 0.797 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2422 ; 1.305 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1395 ; 2.083 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1313 ; 3.518 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 22 REMARK 3 ORIGIN FOR THE GROUP (A): 122.7367 22.8819 7.6943 REMARK 3 T TENSOR REMARK 3 T11: -0.2143 T22: -0.1649 REMARK 3 T33: 0.1299 T12: 0.0443 REMARK 3 T13: 0.3359 T23: 0.2388 REMARK 3 L TENSOR REMARK 3 L11: 17.4148 L22: 6.3773 REMARK 3 L33: 11.7615 L12: 2.7925 REMARK 3 L13: 2.5682 L23: 1.5690 REMARK 3 S TENSOR REMARK 3 S11: -0.2007 S12: -0.0520 S13: -1.1259 REMARK 3 S21: -0.2661 S22: 0.0906 S23: 0.0029 REMARK 3 S31: 0.8409 S32: 0.1317 S33: 0.1101 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 124.1690 32.4671 8.3021 REMARK 3 T TENSOR REMARK 3 T11: -0.2967 T22: -0.1786 REMARK 3 T33: -0.0661 T12: -0.0015 REMARK 3 T13: 0.3219 T23: 0.2476 REMARK 3 L TENSOR REMARK 3 L11: 4.5068 L22: 2.5527 REMARK 3 L33: 5.5636 L12: -0.8246 REMARK 3 L13: 0.7977 L23: 0.7635 REMARK 3 S TENSOR REMARK 3 S11: -0.3339 S12: 0.2861 S13: -0.2024 REMARK 3 S21: -0.5005 S22: -0.1421 S23: -0.0693 REMARK 3 S31: -0.0317 S32: 0.4487 S33: 0.4760 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 128.7615 28.7173 19.0757 REMARK 3 T TENSOR REMARK 3 T11: -0.3085 T22: 0.0227 REMARK 3 T33: -0.0297 T12: 0.1549 REMARK 3 T13: 0.3106 T23: 0.3995 REMARK 3 L TENSOR REMARK 3 L11: 4.6196 L22: 6.3546 REMARK 3 L33: 4.4399 L12: -1.1958 REMARK 3 L13: 0.7776 L23: 2.7421 REMARK 3 S TENSOR REMARK 3 S11: -0.2756 S12: -0.4250 S13: -0.4960 REMARK 3 S21: 0.4825 S22: -0.0453 S23: -0.3850 REMARK 3 S31: 0.4508 S32: 0.5938 S33: 0.3209 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 124.0057 36.9955 27.4286 REMARK 3 T TENSOR REMARK 3 T11: -0.1783 T22: 0.0936 REMARK 3 T33: -0.0798 T12: -0.0481 REMARK 3 T13: -0.0108 T23: 0.4180 REMARK 3 L TENSOR REMARK 3 L11: 12.9160 L22: 13.2852 REMARK 3 L33: 1.6758 L12: -12.0737 REMARK 3 L13: -3.7852 L23: 4.6025 REMARK 3 S TENSOR REMARK 3 S11: -0.3649 S12: -1.0697 S13: -1.1757 REMARK 3 S21: 1.2513 S22: 0.1088 S23: 0.8326 REMARK 3 S31: 0.2306 S32: -0.0542 S33: 0.2561 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 131.5847 37.1154 26.8693 REMARK 3 T TENSOR REMARK 3 T11: -0.0978 T22: 0.2184 REMARK 3 T33: 0.0532 T12: -0.0168 REMARK 3 T13: 0.1171 T23: 0.2687 REMARK 3 L TENSOR REMARK 3 L11: 42.8952 L22: 11.9642 REMARK 3 L33: 7.3178 L12: -6.3115 REMARK 3 L13: -5.9644 L23: 3.3105 REMARK 3 S TENSOR REMARK 3 S11: -0.4587 S12: -0.1648 S13: -1.5851 REMARK 3 S21: 0.4353 S22: 0.0641 S23: -1.7183 REMARK 3 S31: 0.1750 S32: 1.4548 S33: 0.3946 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 22 REMARK 3 ORIGIN FOR THE GROUP (A): 103.7147 44.6227 36.8293 REMARK 3 T TENSOR REMARK 3 T11: -0.3527 T22: -0.0781 REMARK 3 T33: -0.2506 T12: 0.0541 REMARK 3 T13: 0.0748 T23: 0.2534 REMARK 3 L TENSOR REMARK 3 L11: 14.3591 L22: 12.4867 REMARK 3 L33: 14.9517 L12: -8.3166 REMARK 3 L13: 6.7513 L23: -4.9595 REMARK 3 S TENSOR REMARK 3 S11: -0.5590 S12: -1.5809 S13: -0.6785 REMARK 3 S21: 0.8697 S22: 0.6950 S23: 0.3201 REMARK 3 S31: -0.0823 S32: -0.8748 S33: -0.1360 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 75 REMARK 3 ORIGIN FOR THE GROUP (A): 109.6321 49.0519 30.9561 REMARK 3 T TENSOR REMARK 3 T11: -0.1640 T22: -0.2747 REMARK 3 T33: -0.2365 T12: 0.0445 REMARK 3 T13: -0.0117 T23: 0.1972 REMARK 3 L TENSOR REMARK 3 L11: 8.1328 L22: 3.0534 REMARK 3 L33: 7.0931 L12: -1.7233 REMARK 3 L13: 3.0785 L23: 1.7621 REMARK 3 S TENSOR REMARK 3 S11: -0.2377 S12: -0.7375 S13: 0.3799 REMARK 3 S21: 0.3879 S22: -0.2219 S23: -0.4874 REMARK 3 S31: -0.9542 S32: 0.7985 S33: 0.4597 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 76 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 101.0083 45.9595 22.6069 REMARK 3 T TENSOR REMARK 3 T11: -0.3469 T22: -0.3080 REMARK 3 T33: -0.4313 T12: 0.1437 REMARK 3 T13: 0.0784 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 5.5002 L22: 5.9937 REMARK 3 L33: 8.8187 L12: -0.1240 REMARK 3 L13: -0.2717 L23: -2.4207 REMARK 3 S TENSOR REMARK 3 S11: -0.1417 S12: 0.5917 S13: -0.2138 REMARK 3 S21: -0.0875 S22: 0.0731 S23: -0.1359 REMARK 3 S31: -0.1941 S32: -0.3243 S33: 0.0686 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 109 B 139 REMARK 3 ORIGIN FOR THE GROUP (A): 107.7453 41.2483 13.2162 REMARK 3 T TENSOR REMARK 3 T11: -0.1166 T22: -0.1761 REMARK 3 T33: -0.2028 T12: 0.0519 REMARK 3 T13: 0.0486 T23: 0.1598 REMARK 3 L TENSOR REMARK 3 L11: 18.7457 L22: 0.2371 REMARK 3 L33: 1.9148 L12: -0.0915 REMARK 3 L13: -4.6860 L23: 0.4423 REMARK 3 S TENSOR REMARK 3 S11: -0.3953 S12: 0.9109 S13: -1.8736 REMARK 3 S21: -0.2172 S22: -0.2509 S23: -0.4812 REMARK 3 S31: 0.3766 S32: -0.2829 S33: 0.6462 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 140 B 150 REMARK 3 ORIGIN FOR THE GROUP (A): 106.0091 47.2944 11.1407 REMARK 3 T TENSOR REMARK 3 T11: -0.1211 T22: -0.0284 REMARK 3 T33: -0.5901 T12: -0.1127 REMARK 3 T13: -0.0281 T23: 0.1603 REMARK 3 L TENSOR REMARK 3 L11: 42.8856 L22: 33.5243 REMARK 3 L33: 4.2629 L12: -25.3514 REMARK 3 L13: -13.5106 L23: 7.6379 REMARK 3 S TENSOR REMARK 3 S11: 0.9255 S12: 1.7558 S13: 0.9792 REMARK 3 S21: -2.4989 S22: -1.5389 S23: -0.0389 REMARK 3 S31: -0.5871 S32: 0.3825 S33: 0.6134 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PR1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : K-B PAIR BIOMORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11325 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M COBALT CHLORIDE, 0.25M SODIUM REMARK 280 CHLORIDE, 0.1M MES, 1.8M AMMONIUM SULFATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.14500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.14500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.14500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.14500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 51.14500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 51.14500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT A DIMER REMARK 300 WITH THE ASSEMBLY SHOWN IN REMARK 350 IS PROBABLY THE REMARK 300 BIOLOGICAL UNIT OF THIS POLYPEPTIDE. SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 51.14500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 153 REMARK 465 MET A 154 REMARK 465 THR A 155 REMARK 465 PRO A 156 REMARK 465 GLY A 157 REMARK 465 GLU A 158 REMARK 465 SER A 159 REMARK 465 ALA A 160 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ASP B 151 REMARK 465 ARG B 152 REMARK 465 GLU B 153 REMARK 465 MET B 154 REMARK 465 THR B 155 REMARK 465 PRO B 156 REMARK 465 GLY B 157 REMARK 465 GLU B 158 REMARK 465 SER B 159 REMARK 465 ALA B 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 121 CD GLU A 121 OE1 0.145 REMARK 500 GLU A 121 CD GLU A 121 OE2 0.120 REMARK 500 ASP B 142 CG ASP B 142 OD1 0.143 REMARK 500 MET B 150 C MET B 150 O 0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 39 -6.81 -53.11 REMARK 500 ASN A 75 51.19 27.54 REMARK 500 LYS A 118 40.70 -93.78 REMARK 500 SER A 119 37.64 -159.80 REMARK 500 LYS A 139 66.09 32.40 REMARK 500 ASP A 149 38.77 76.56 REMARK 500 MET A 150 -84.92 -135.39 REMARK 500 ARG B 76 38.00 31.43 REMARK 500 MET B 117 -87.86 -28.15 REMARK 500 LYS B 139 71.22 48.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC1310 RELATED DB: TARGETDB DBREF 2PR1 A 1 160 UNP O34468 YLBP_BACSU 1 160 DBREF 2PR1 B 1 160 UNP O34468 YLBP_BACSU 1 160 SEQADV 2PR1 SER A -2 UNP O34468 CLONING ARTIFACT SEQADV 2PR1 ASN A -1 UNP O34468 CLONING ARTIFACT SEQADV 2PR1 ALA A 0 UNP O34468 CLONING ARTIFACT SEQADV 2PR1 SER B -2 UNP O34468 CLONING ARTIFACT SEQADV 2PR1 ASN B -1 UNP O34468 CLONING ARTIFACT SEQADV 2PR1 ALA B 0 UNP O34468 CLONING ARTIFACT SEQRES 1 A 163 SER ASN ALA MET THR LYS VAL GLU ARG LEU LEU ILE ASN SEQRES 2 A 163 TYR LYS THR LEU GLU GLU PHE LYS LYS PHE LYS GLU TYR SEQRES 3 A 163 GLY ILE GLN GLU LEU SER MET LEU GLU GLU LEU GLN ASP SEQRES 4 A 163 ASN ILE ILE GLU ASN ASP SER THR SER PRO PHE TYR GLY SEQRES 5 A 163 ILE TYR PHE GLY ASP LYS LEU VAL ALA ARG MET SER LEU SEQRES 6 A 163 TYR GLN VAL ASN GLY LYS SER ASN PRO TYR PHE ASP ASN SEQRES 7 A 163 ARG GLN ASP TYR LEU GLU LEU TRP LYS LEU GLU VAL LEU SEQRES 8 A 163 PRO GLY TYR GLN ASN ARG GLY TYR GLY ARG ALA LEU VAL SEQRES 9 A 163 GLU PHE ALA LYS SER PHE LYS MET PRO ILE ARG THR ASN SEQRES 10 A 163 PRO ARG MET LYS SER ALA GLU PHE TRP ASN LYS MET ASN SEQRES 11 A 163 PHE LYS THR VAL LYS TYR ASP MET ALA ARG ASP LYS GLY SEQRES 12 A 163 GLU ASP PRO LEU ILE TRP HIS PRO ASP MET ASP ARG GLU SEQRES 13 A 163 MET THR PRO GLY GLU SER ALA SEQRES 1 B 163 SER ASN ALA MET THR LYS VAL GLU ARG LEU LEU ILE ASN SEQRES 2 B 163 TYR LYS THR LEU GLU GLU PHE LYS LYS PHE LYS GLU TYR SEQRES 3 B 163 GLY ILE GLN GLU LEU SER MET LEU GLU GLU LEU GLN ASP SEQRES 4 B 163 ASN ILE ILE GLU ASN ASP SER THR SER PRO PHE TYR GLY SEQRES 5 B 163 ILE TYR PHE GLY ASP LYS LEU VAL ALA ARG MET SER LEU SEQRES 6 B 163 TYR GLN VAL ASN GLY LYS SER ASN PRO TYR PHE ASP ASN SEQRES 7 B 163 ARG GLN ASP TYR LEU GLU LEU TRP LYS LEU GLU VAL LEU SEQRES 8 B 163 PRO GLY TYR GLN ASN ARG GLY TYR GLY ARG ALA LEU VAL SEQRES 9 B 163 GLU PHE ALA LYS SER PHE LYS MET PRO ILE ARG THR ASN SEQRES 10 B 163 PRO ARG MET LYS SER ALA GLU PHE TRP ASN LYS MET ASN SEQRES 11 B 163 PHE LYS THR VAL LYS TYR ASP MET ALA ARG ASP LYS GLY SEQRES 12 B 163 GLU ASP PRO LEU ILE TRP HIS PRO ASP MET ASP ARG GLU SEQRES 13 B 163 MET THR PRO GLY GLU SER ALA HET GLC C 1 11 HET FRU C 2 12 HET GLC D 1 11 HET FRU D 2 12 HET SO4 A 205 5 HET COA A 206 48 HET CO B 202 1 HET CO B 203 1 HET SO4 B 204 5 HET COA B 206 48 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM SO4 SULFATE ION HETNAM COA COENZYME A HETNAM CO COBALT (II) ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 3 GLC 2(C6 H12 O6) FORMUL 3 FRU 2(C6 H12 O6) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 COA 2(C21 H36 N7 O16 P3 S) FORMUL 7 CO 2(CO 2+) FORMUL 11 HOH *23(H2 O) HELIX 1 1 ASN A 10 LYS A 18 1 9 HELIX 2 2 GLY A 24 ASN A 37 1 14 HELIX 3 3 ILE A 38 ASN A 41 5 4 HELIX 4 4 PHE A 73 GLN A 77 5 5 HELIX 5 5 GLY A 95 SER A 106 1 12 HELIX 6 6 ARG A 116 LYS A 118 5 3 HELIX 7 7 SER A 119 MET A 126 1 8 HELIX 8 8 ASP A 134 LYS A 139 1 6 HELIX 9 9 ASN B 10 LYS B 18 1 9 HELIX 10 10 GLY B 24 ASP B 36 1 13 HELIX 11 11 PHE B 73 GLN B 77 5 5 HELIX 12 12 GLY B 95 SER B 106 1 12 HELIX 13 13 ARG B 116 LYS B 118 5 3 HELIX 14 14 SER B 119 MET B 126 1 8 HELIX 15 15 ASP B 134 LYS B 139 1 6 SHEET 1 A 7 GLU A 5 ILE A 9 0 SHEET 2 A 7 SER A 43 PHE A 52 -1 O SER A 43 N ILE A 9 SHEET 3 A 7 LYS A 55 VAL A 65 -1 O MET A 60 N TYR A 48 SHEET 4 A 7 TYR A 79 VAL A 87 -1 O TRP A 83 N SER A 61 SHEET 5 A 7 ILE A 111 THR A 113 1 O ARG A 112 N LEU A 80 SHEET 6 A 7 LEU A 144 TRP A 146 -1 O TRP A 146 N ILE A 111 SHEET 7 A 7 LYS A 129 THR A 130 -1 N LYS A 129 O ILE A 145 SHEET 1 B 7 GLU B 5 ARG B 6 0 SHEET 2 B 7 PHE B 47 PHE B 52 -1 O GLY B 49 N GLU B 5 SHEET 3 B 7 LYS B 55 VAL B 65 -1 O LYS B 55 N PHE B 52 SHEET 4 B 7 TYR B 79 VAL B 87 -1 O TRP B 83 N SER B 61 SHEET 5 B 7 ILE B 111 THR B 113 1 O ARG B 112 N LEU B 82 SHEET 6 B 7 LEU B 144 TRP B 146 -1 O TRP B 146 N ILE B 111 SHEET 7 B 7 LYS B 129 THR B 130 -1 N LYS B 129 O ILE B 145 LINK C1 GLC C 1 O2 FRU C 2 1555 1555 1.42 LINK C1 GLC D 1 O2 FRU D 2 1555 1555 1.42 CRYST1 148.572 148.572 102.290 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006731 0.003886 0.000000 0.00000 SCALE2 0.000000 0.007772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009776 0.00000