HEADER FLAVOPROTEIN, SIGNALING PROTEIN 03-MAY-07 2PR5 TITLE STRUCTURAL BASIS FOR LIGHT-DEPENDENT SIGNALING IN THE DIMERIC LOV TITLE 2 PHOTOSENSOR YTVA (DARK STRUCTURE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLUE-LIGHT PHOTORECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 20-147; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: PFYP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAM001 KEYWDS LIGHT-OXYGEN-VOLTAGE, LOV, PER-ARNT-SIM, PAS, FLAVOPROTEIN, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.MOGLICH,K.MOFFAT REVDAT 6 21-FEB-24 2PR5 1 REMARK SEQADV REVDAT 5 18-OCT-17 2PR5 1 REMARK REVDAT 4 13-JUL-11 2PR5 1 VERSN REVDAT 3 24-FEB-09 2PR5 1 VERSN REVDAT 2 25-SEP-07 2PR5 1 JRNL REVDAT 1 07-AUG-07 2PR5 0 JRNL AUTH A.MOGLICH,K.MOFFAT JRNL TITL STRUCTURAL BASIS FOR LIGHT-DEPENDENT SIGNALING IN THE JRNL TITL 2 DIMERIC LOV DOMAIN OF THE PHOTOSENSOR YTVA. JRNL REF J.MOL.BIOL. V. 373 112 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17764689 JRNL DOI 10.1016/J.JMB.2007.07.039 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 48050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2458 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3478 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2043 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 452 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.306 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2234 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3062 ; 1.190 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 277 ; 5.682 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;36.244 ;26.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 400 ;13.003 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;10.829 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 345 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1702 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1099 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1551 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 334 ; 0.124 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.160 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 53 ; 0.122 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1311 ; 0.533 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2160 ; 1.008 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1007 ; 1.667 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 889 ; 2.719 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 24 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1862 28.1383 -0.4736 REMARK 3 T TENSOR REMARK 3 T11: 0.0468 T22: 0.1206 REMARK 3 T33: 0.0678 T12: 0.0714 REMARK 3 T13: -0.0318 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 6.1851 L22: 11.4857 REMARK 3 L33: 28.4147 L12: 3.5317 REMARK 3 L13: -7.9321 L23: 4.3369 REMARK 3 S TENSOR REMARK 3 S11: 0.3244 S12: 0.5919 S13: 0.4756 REMARK 3 S21: -0.3385 S22: -0.1171 S23: 1.5414 REMARK 3 S31: -1.5548 S32: -1.8249 S33: -0.2072 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4044 28.6837 14.5253 REMARK 3 T TENSOR REMARK 3 T11: -0.0715 T22: -0.0375 REMARK 3 T33: -0.0789 T12: 0.0000 REMARK 3 T13: 0.0005 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.6258 L22: 1.2978 REMARK 3 L33: 0.6598 L12: -0.0589 REMARK 3 L13: -0.0159 L23: 0.1788 REMARK 3 S TENSOR REMARK 3 S11: 0.0427 S12: 0.0008 S13: 0.0109 REMARK 3 S21: 0.0054 S22: -0.0008 S23: -0.0989 REMARK 3 S31: -0.0587 S32: 0.0300 S33: -0.0419 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8779 47.1201 5.4676 REMARK 3 T TENSOR REMARK 3 T11: 0.0194 T22: 0.0124 REMARK 3 T33: 0.0568 T12: 0.0444 REMARK 3 T13: -0.0144 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 8.6157 L22: 13.5432 REMARK 3 L33: 0.0515 L12: -10.7017 REMARK 3 L13: -0.1300 L23: 0.2729 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: 0.0287 S13: 0.0341 REMARK 3 S21: -0.0723 S22: -0.0552 S23: 0.2721 REMARK 3 S31: 0.0025 S32: -0.0378 S33: 0.0453 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 24 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9359 28.0219 11.5871 REMARK 3 T TENSOR REMARK 3 T11: 0.1493 T22: 0.0819 REMARK 3 T33: 0.1083 T12: 0.0741 REMARK 3 T13: 0.0369 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 33.7975 L22: 95.2735 REMARK 3 L33: 51.9712 L12: -43.0264 REMARK 3 L13: -31.2535 L23: 9.2213 REMARK 3 S TENSOR REMARK 3 S11: 1.9960 S12: 0.6393 S13: -1.0064 REMARK 3 S21: -0.9374 S22: -0.7827 S23: 0.2951 REMARK 3 S31: -1.8424 S32: -1.4863 S33: -1.2134 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 125 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3534 10.9110 8.9918 REMARK 3 T TENSOR REMARK 3 T11: -0.0706 T22: -0.0328 REMARK 3 T33: -0.0162 T12: 0.0018 REMARK 3 T13: 0.0101 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.7620 L22: 1.7331 REMARK 3 L33: 0.7281 L12: -0.1879 REMARK 3 L13: 0.2727 L23: 0.0052 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: 0.0435 S13: -0.1163 REMARK 3 S21: 0.0274 S22: 0.0144 S23: 0.0956 REMARK 3 S31: 0.0408 S32: -0.0133 S33: -0.0257 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 126 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0620 34.0619 -1.0770 REMARK 3 T TENSOR REMARK 3 T11: 0.1045 T22: 0.0260 REMARK 3 T33: 0.0420 T12: 0.0649 REMARK 3 T13: -0.0134 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 2.6641 L22: 19.1371 REMARK 3 L33: 1.8852 L12: -6.6697 REMARK 3 L13: 1.6465 L23: -2.9000 REMARK 3 S TENSOR REMARK 3 S11: 0.1748 S12: 0.1301 S13: -0.0741 REMARK 3 S21: -0.6089 S22: -0.1918 S23: 0.2622 REMARK 3 S31: -0.3113 S32: -0.0907 S33: 0.0169 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PR5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : BENT GE(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48278 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA ACETATE PH 4.6, 18-22 % (W/V) REMARK 280 PEG-4000, 75-150 MM AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.42300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.81700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.42300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.81700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 91.63400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 HIS A 18 REMARK 465 MET A 19 REMARK 465 LEU A 20 REMARK 465 GLY B 16 REMARK 465 SER B 17 REMARK 465 HIS B 18 REMARK 465 MET B 19 REMARK 465 LEU B 20 REMARK 465 SER B 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 107 O HOH A 821 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PR6 RELATED DB: PDB REMARK 900 LIGHT STRUCTURE OF YTVA-LOV DBREF 2PR5 A 20 147 UNP O34627 PHOT_BACSU 20 147 DBREF 2PR5 B 20 147 UNP O34627 PHOT_BACSU 20 147 SEQADV 2PR5 GLY A 16 UNP O34627 CLONING ARTIFACT SEQADV 2PR5 SER A 17 UNP O34627 CLONING ARTIFACT SEQADV 2PR5 HIS A 18 UNP O34627 CLONING ARTIFACT SEQADV 2PR5 MET A 19 UNP O34627 CLONING ARTIFACT SEQADV 2PR5 GLY B 16 UNP O34627 CLONING ARTIFACT SEQADV 2PR5 SER B 17 UNP O34627 CLONING ARTIFACT SEQADV 2PR5 HIS B 18 UNP O34627 CLONING ARTIFACT SEQADV 2PR5 MET B 19 UNP O34627 CLONING ARTIFACT SEQRES 1 A 132 GLY SER HIS MET LEU ASP HIS VAL ARG VAL GLY VAL VAL SEQRES 2 A 132 ILE THR ASP PRO ALA LEU GLU ASP ASN PRO ILE VAL TYR SEQRES 3 A 132 VAL ASN GLN GLY PHE VAL GLN MET THR GLY TYR GLU THR SEQRES 4 A 132 GLU GLU ILE LEU GLY LYS ASN CYS ARG PHE LEU GLN GLY SEQRES 5 A 132 LYS HIS THR ASP PRO ALA GLU VAL ASP ASN ILE ARG THR SEQRES 6 A 132 ALA LEU GLN ASN LYS GLU PRO VAL THR VAL GLN ILE GLN SEQRES 7 A 132 ASN TYR LYS LYS ASP GLY THR MET PHE TRP ASN GLU LEU SEQRES 8 A 132 ASN ILE ASP PRO MET GLU ILE GLU ASP LYS THR TYR PHE SEQRES 9 A 132 VAL GLY ILE GLN ASN ASP ILE THR LYS GLN LYS GLU TYR SEQRES 10 A 132 GLU LYS LEU LEU GLU ASP SER LEU THR GLU ILE THR ALA SEQRES 11 A 132 LEU SER SEQRES 1 B 132 GLY SER HIS MET LEU ASP HIS VAL ARG VAL GLY VAL VAL SEQRES 2 B 132 ILE THR ASP PRO ALA LEU GLU ASP ASN PRO ILE VAL TYR SEQRES 3 B 132 VAL ASN GLN GLY PHE VAL GLN MET THR GLY TYR GLU THR SEQRES 4 B 132 GLU GLU ILE LEU GLY LYS ASN CYS ARG PHE LEU GLN GLY SEQRES 5 B 132 LYS HIS THR ASP PRO ALA GLU VAL ASP ASN ILE ARG THR SEQRES 6 B 132 ALA LEU GLN ASN LYS GLU PRO VAL THR VAL GLN ILE GLN SEQRES 7 B 132 ASN TYR LYS LYS ASP GLY THR MET PHE TRP ASN GLU LEU SEQRES 8 B 132 ASN ILE ASP PRO MET GLU ILE GLU ASP LYS THR TYR PHE SEQRES 9 B 132 VAL GLY ILE GLN ASN ASP ILE THR LYS GLN LYS GLU TYR SEQRES 10 B 132 GLU LYS LEU LEU GLU ASP SER LEU THR GLU ILE THR ALA SEQRES 11 B 132 LEU SER HET NA A 701 1 HET FMN A 500 31 HET ACY A 601 4 HET FMN B 501 31 HET ACY B 602 4 HETNAM NA SODIUM ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ACY ACETIC ACID HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 NA NA 1+ FORMUL 4 FMN 2(C17 H21 N4 O9 P) FORMUL 5 ACY 2(C2 H4 O2) FORMUL 8 HOH *452(H2 O) HELIX 1 1 ASN A 43 GLY A 51 1 9 HELIX 2 2 GLU A 53 LEU A 58 1 6 HELIX 3 3 ASN A 61 GLN A 66 5 6 HELIX 4 4 ASP A 71 LYS A 85 1 15 HELIX 5 5 ILE A 126 LEU A 146 1 21 HELIX 6 6 ASN B 43 GLY B 51 1 9 HELIX 7 7 GLU B 53 ILE B 57 5 5 HELIX 8 8 ASN B 61 GLN B 66 5 6 HELIX 9 9 ASP B 71 LYS B 85 1 15 HELIX 10 10 ILE B 126 LEU B 146 1 21 SHEET 1 A 5 ILE A 39 VAL A 42 0 SHEET 2 A 5 GLY A 26 THR A 30 -1 N ILE A 29 O VAL A 40 SHEET 3 A 5 LYS A 116 ASP A 125 -1 O GLY A 121 N VAL A 28 SHEET 4 A 5 MET A 101 ILE A 113 -1 N GLU A 105 O ASN A 124 SHEET 5 A 5 VAL A 88 TYR A 95 -1 N ILE A 92 O ASN A 104 SHEET 1 B 5 ILE B 39 VAL B 42 0 SHEET 2 B 5 GLY B 26 THR B 30 -1 N ILE B 29 O VAL B 40 SHEET 3 B 5 LYS B 116 ASP B 125 -1 O GLY B 121 N VAL B 28 SHEET 4 B 5 MET B 101 ILE B 113 -1 N GLU B 105 O ASN B 124 SHEET 5 B 5 VAL B 88 TYR B 95 -1 N VAL B 90 O LEU B 106 SITE 1 AC1 4 HOH A 706 HOH A 724 HOH A 728 HOH B 728 SITE 1 AC2 24 VAL A 28 THR A 30 ASN A 37 ASN A 61 SITE 2 AC2 24 CYS A 62 ARG A 63 LEU A 65 GLN A 66 SITE 3 AC2 24 VAL A 75 ILE A 78 ARG A 79 LEU A 82 SITE 4 AC2 24 ASN A 94 ASN A 104 LEU A 106 ILE A 108 SITE 5 AC2 24 GLY A 121 GLN A 123 HOH A 703 HOH A 706 SITE 6 AC2 24 HOH A 724 HOH A 727 HOH A 737 HOH A 840 SITE 1 AC3 22 THR B 30 ASN B 37 ASN B 61 CYS B 62 SITE 2 AC3 22 ARG B 63 LEU B 65 GLN B 66 VAL B 75 SITE 3 AC3 22 ARG B 79 LEU B 82 ASN B 94 ASN B 104 SITE 4 AC3 22 LEU B 106 PHE B 119 GLY B 121 GLN B 123 SITE 5 AC3 22 HOH B 604 HOH B 610 HOH B 620 HOH B 621 SITE 6 AC3 22 HOH B 638 HOH B 720 SITE 1 AC4 8 ARG A 24 VAL A 25 HOH A 722 HOH A 833 SITE 2 AC4 8 HOH A 875 ILE B 122 ASN B 124 HOH B 696 SITE 1 AC5 3 LYS A 97 HIS B 69 GLN B 93 CRYST1 88.846 91.634 34.239 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011255 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010913 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029206 0.00000