HEADER OXIDOREDUCTASE 06-MAY-07 2PSD TITLE CRYSTAL STRUCTURES OF THE LUCIFERASE AND GREEN FLUORESCENT PROTEIN TITLE 2 FROM RENILLA RENIFORMIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RENILLA-LUCIFERIN 2-MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RENILLA-TYPE LUCIFERASE; COMPND 5 EC: 1.13.12.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RENILLA RENIFORMIS; SOURCE 3 ORGANISM_TAXID: 6136; SOURCE 4 GENE: RLUC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: LMG194; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS ALPHA/BETA-HYDROLASE, LUCIFERASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.LOENING,T.D.FENN,S.S.GAMBHIR REVDAT 6 21-FEB-24 2PSD 1 REMARK REVDAT 5 20-OCT-21 2PSD 1 REMARK SEQADV REVDAT 4 13-JUL-11 2PSD 1 VERSN REVDAT 3 24-FEB-09 2PSD 1 VERSN REVDAT 2 27-NOV-07 2PSD 1 JRNL REVDAT 1 05-JUN-07 2PSD 0 JRNL AUTH A.M.LOENING,T.D.FENN,S.S.GAMBHIR JRNL TITL CRYSTAL STRUCTURES OF THE LUCIFERASE AND GREEN FLUORESCENT JRNL TITL 2 PROTEIN FROM RENILLA RENIFORMIS. JRNL REF J.MOL.BIOL. V. 374 1017 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17980388 JRNL DOI 10.1016/J.JMB.2007.09.078 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 73121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3868 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5261 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3820 REMARK 3 BIN FREE R VALUE SET COUNT : 280 REMARK 3 BIN FREE R VALUE : 0.4140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2502 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 384 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -0.76000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.052 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.178 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2610 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2344 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3534 ; 1.372 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5474 ; 0.843 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 5.799 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;30.990 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 458 ;12.574 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.615 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2884 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 550 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 564 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2494 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1309 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1418 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 272 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.058 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 26 ; 0.283 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2011 ; 0.802 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 617 ; 0.167 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2507 ; 0.891 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1277 ; 1.746 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1027 ; 2.468 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 150 REMARK 3 RESIDUE RANGE : A 226 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): 82.3974 0.7371 -0.3043 REMARK 3 T TENSOR REMARK 3 T11: -0.1423 T22: -0.1421 REMARK 3 T33: -0.1361 T12: -0.0055 REMARK 3 T13: -0.0170 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 0.9198 L22: 1.4297 REMARK 3 L33: 1.9263 L12: 0.1018 REMARK 3 L13: 0.5379 L23: 0.0846 REMARK 3 S TENSOR REMARK 3 S11: 0.1043 S12: 0.0341 S13: -0.0368 REMARK 3 S21: 0.1166 S22: -0.0218 S23: -0.0746 REMARK 3 S31: 0.1103 S32: 0.1128 S33: -0.0825 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 65.8187 5.4965 6.0514 REMARK 3 T TENSOR REMARK 3 T11: -0.0975 T22: -0.0011 REMARK 3 T33: -0.0821 T12: -0.0123 REMARK 3 T13: 0.0411 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 1.1553 L22: 0.7535 REMARK 3 L33: 3.5203 L12: 0.1091 REMARK 3 L13: 0.6885 L23: 0.2047 REMARK 3 S TENSOR REMARK 3 S11: 0.1027 S12: -0.1680 S13: 0.0052 REMARK 3 S21: 0.1866 S22: -0.0607 S23: 0.2024 REMARK 3 S31: 0.0561 S32: -0.6419 S33: -0.0420 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PSD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73121 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M NACL, 1.25M DIAMMONIUM PHOSPHATE, REMARK 280 0.1M IMIDAZOLE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 15.99833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.99667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.99750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.99583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 7.99917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ASN A 309 REMARK 465 GLU A 310 REMARK 465 GLN A 311 REMARK 465 VAL A 312 REMARK 465 ASP A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 287 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 LEU A 287 CB - CG - CD1 ANGL. DEV. = 10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 30 -125.14 49.87 REMARK 500 SER A 32 -147.68 -149.29 REMARK 500 GLU A 40 -54.00 74.87 REMARK 500 ALA A 54 -19.43 80.30 REMARK 500 THR A 55 -161.92 -114.65 REMARK 500 ASP A 120 -133.52 58.76 REMARK 500 GLU A 144 53.84 39.02 REMARK 500 PHE A 261 -65.66 -109.96 REMARK 500 LEU A 284 -116.50 -114.64 REMARK 500 ALA A 291 48.56 -140.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PSE RELATED DB: PDB REMARK 900 RELATED ID: 2PSF RELATED DB: PDB REMARK 900 RELATED ID: 2PSH RELATED DB: PDB REMARK 900 RELATED ID: 2PSJ RELATED DB: PDB REMARK 900 RELATED ID: 2PSL RELATED DB: PDB DBREF 2PSD A 3 311 UNP P27652 LUCI_RENRE 3 311 SEQADV 2PSD ALA A 2 UNP P27652 EXPRESSION TAG SEQADV 2PSD THR A 55 UNP P27652 ALA 55 ENGINEERED MUTATION SEQADV 2PSD ALA A 124 UNP P27652 CYS 124 ENGINEERED MUTATION SEQADV 2PSD ALA A 130 UNP P27652 SER 130 ENGINEERED MUTATION SEQADV 2PSD ARG A 136 UNP P27652 LYS 136 ENGINEERED MUTATION SEQADV 2PSD MET A 143 UNP P27652 ALA 143 ENGINEERED MUTATION SEQADV 2PSD VAL A 185 UNP P27652 MET 185 ENGINEERED MUTATION SEQADV 2PSD LEU A 253 UNP P27652 MET 253 ENGINEERED MUTATION SEQADV 2PSD LEU A 287 UNP P27652 SER 287 ENGINEERED MUTATION SEQADV 2PSD VAL A 312 UNP P27652 EXPRESSION TAG SEQADV 2PSD ASP A 313 UNP P27652 EXPRESSION TAG SEQADV 2PSD HIS A 314 UNP P27652 EXPRESSION TAG SEQADV 2PSD HIS A 315 UNP P27652 EXPRESSION TAG SEQADV 2PSD HIS A 316 UNP P27652 EXPRESSION TAG SEQADV 2PSD HIS A 317 UNP P27652 EXPRESSION TAG SEQADV 2PSD HIS A 318 UNP P27652 EXPRESSION TAG SEQADV 2PSD HIS A 319 UNP P27652 EXPRESSION TAG SEQRES 1 A 318 ALA SER LYS VAL TYR ASP PRO GLU GLN ARG LYS ARG MET SEQRES 2 A 318 ILE THR GLY PRO GLN TRP TRP ALA ARG CYS LYS GLN MET SEQRES 3 A 318 ASN VAL LEU ASP SER PHE ILE ASN TYR TYR ASP SER GLU SEQRES 4 A 318 LYS HIS ALA GLU ASN ALA VAL ILE PHE LEU HIS GLY ASN SEQRES 5 A 318 ALA THR SER SER TYR LEU TRP ARG HIS VAL VAL PRO HIS SEQRES 6 A 318 ILE GLU PRO VAL ALA ARG CYS ILE ILE PRO ASP LEU ILE SEQRES 7 A 318 GLY MET GLY LYS SER GLY LYS SER GLY ASN GLY SER TYR SEQRES 8 A 318 ARG LEU LEU ASP HIS TYR LYS TYR LEU THR ALA TRP PHE SEQRES 9 A 318 GLU LEU LEU ASN LEU PRO LYS LYS ILE ILE PHE VAL GLY SEQRES 10 A 318 HIS ASP TRP GLY ALA ALA LEU ALA PHE HIS TYR ALA TYR SEQRES 11 A 318 GLU HIS GLN ASP ARG ILE LYS ALA ILE VAL HIS MET GLU SEQRES 12 A 318 SER VAL VAL ASP VAL ILE GLU SER TRP ASP GLU TRP PRO SEQRES 13 A 318 ASP ILE GLU GLU ASP ILE ALA LEU ILE LYS SER GLU GLU SEQRES 14 A 318 GLY GLU LYS MET VAL LEU GLU ASN ASN PHE PHE VAL GLU SEQRES 15 A 318 THR VAL LEU PRO SER LYS ILE MET ARG LYS LEU GLU PRO SEQRES 16 A 318 GLU GLU PHE ALA ALA TYR LEU GLU PRO PHE LYS GLU LYS SEQRES 17 A 318 GLY GLU VAL ARG ARG PRO THR LEU SER TRP PRO ARG GLU SEQRES 18 A 318 ILE PRO LEU VAL LYS GLY GLY LYS PRO ASP VAL VAL GLN SEQRES 19 A 318 ILE VAL ARG ASN TYR ASN ALA TYR LEU ARG ALA SER ASP SEQRES 20 A 318 ASP LEU PRO LYS LEU PHE ILE GLU SER ASP PRO GLY PHE SEQRES 21 A 318 PHE SER ASN ALA ILE VAL GLU GLY ALA LYS LYS PHE PRO SEQRES 22 A 318 ASN THR GLU PHE VAL LYS VAL LYS GLY LEU HIS PHE LEU SEQRES 23 A 318 GLN GLU ASP ALA PRO ASP GLU MET GLY LYS TYR ILE LYS SEQRES 24 A 318 SER PHE VAL GLU ARG VAL LEU LYS ASN GLU GLN VAL ASP SEQRES 25 A 318 HIS HIS HIS HIS HIS HIS HET IMD A 401 5 HET IMD A 402 5 HETNAM IMD IMIDAZOLE FORMUL 2 IMD 2(C3 H5 N2 1+) FORMUL 4 HOH *384(H2 O) HELIX 1 1 GLU A 9 MET A 14 1 6 HELIX 2 2 THR A 16 CYS A 24 1 9 HELIX 3 3 SER A 56 ARG A 61 5 6 HELIX 4 4 VAL A 63 ILE A 67 5 5 HELIX 5 5 ARG A 93 GLU A 106 1 14 HELIX 6 6 ASP A 120 HIS A 133 1 14 HELIX 7 7 ILE A 159 SER A 168 1 10 HELIX 8 8 GLU A 169 LEU A 176 1 8 HELIX 9 9 ASN A 179 THR A 184 1 6 HELIX 10 10 THR A 184 LYS A 189 1 6 HELIX 11 11 GLU A 195 GLU A 204 1 10 HELIX 12 12 PRO A 205 LYS A 207 5 3 HELIX 13 13 GLY A 210 VAL A 212 5 3 HELIX 14 14 ARG A 213 GLU A 222 1 10 HELIX 15 15 LYS A 230 ALA A 246 1 17 HELIX 16 16 PHE A 262 LYS A 271 1 10 HELIX 17 17 PHE A 286 ASP A 290 5 5 HELIX 18 18 ALA A 291 LYS A 308 1 18 SHEET 1 A 8 LYS A 25 VAL A 29 0 SHEET 2 A 8 SER A 32 ASP A 38 -1 O TYR A 36 N LYS A 25 SHEET 3 A 8 ARG A 72 PRO A 76 -1 O ILE A 75 N TYR A 37 SHEET 4 A 8 ALA A 46 LEU A 50 1 N VAL A 47 O ARG A 72 SHEET 5 A 8 ILE A 114 HIS A 119 1 O VAL A 117 N LEU A 50 SHEET 6 A 8 ILE A 137 MET A 143 1 O VAL A 141 N PHE A 116 SHEET 7 A 8 LYS A 252 PRO A 259 1 O LEU A 253 N HIS A 142 SHEET 8 A 8 THR A 276 GLY A 283 1 O GLU A 277 N PHE A 254 CISPEP 1 ASP A 258 PRO A 259 0 4.11 SITE 1 AC1 2 ASP A 162 HOH A 534 SITE 1 AC2 6 SER A 145 VAL A 146 TRP A 156 PHE A 262 SITE 2 AC2 6 HOH A 431 HOH A 587 CRYST1 119.468 119.468 47.995 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008370 0.004833 0.000000 0.00000 SCALE2 0.000000 0.009665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020836 0.00000