data_2PU6 # _entry.id 2PU6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2PU6 RCSB RCSB042779 WWPDB D_1000042779 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2007-11-06 _pdbx_database_PDB_obs_spr.pdb_id 2RI6 _pdbx_database_PDB_obs_spr.replace_pdb_id 2PU6 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2OG1 . unspecified PDB 1j1I . unspecified PDB 2D0D . unspecified PDB 1C4X . unspecified PDB 1U2E . unspecified PDB 2PU5 . unspecified PDB 2PU7 . unspecified PDB 2PUH . unspecified PDB 2PUJ . unspecified # _pdbx_database_status.entry_id 2PU6 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-05-08 _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bhowmik, S.' 1 'Bolin, J.T.' 2 # _citation.id primary _citation.title ;The Tautomeric Half-reaction of BphD, a C-C Bond Hydrolase: KINETIC AND STRUCTURAL EVIDENCE SUPPORTING A KEY ROLE FOR HISTIDINE 265 OF THE CATALYTIC TRIAD. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 282 _citation.page_first 19894 _citation.page_last 19904 _citation.year 2007 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17442675 _citation.pdbx_database_id_DOI 10.1074/jbc.M702237200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Horsman, G.P.' 1 primary 'Bhowmik, S.' 2 primary 'Seah, S.Y.' 3 primary 'Kumar, P.' 4 primary 'Bolin, J.T.' 5 primary 'Eltis, L.D.' 6 # _cell.entry_id 2PU6 _cell.length_a 117.293 _cell.length_b 117.293 _cell.length_c 87.306 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PU6 _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase' 32052.648 1 3.7.1.- S112A ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn 'MALONATE ION' 102.046 2 ? ? ? ? 4 water nat water 18.015 143 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTALTESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAV VMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLY AEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFV PLDHGLKLLWNIDDARLHVFSKCGHWAQWEHADEFNRLVIDFLRHA ; _entity_poly.pdbx_seq_one_letter_code_can ;MTALTESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAV VMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLY AEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFV PLDHGLKLLWNIDDARLHVFSKCGHWAQWEHADEFNRLVIDFLRHA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 ALA n 1 4 LEU n 1 5 THR n 1 6 GLU n 1 7 SER n 1 8 SER n 1 9 THR n 1 10 SER n 1 11 LYS n 1 12 PHE n 1 13 VAL n 1 14 LYS n 1 15 ILE n 1 16 ASN n 1 17 GLU n 1 18 LYS n 1 19 GLY n 1 20 PHE n 1 21 SER n 1 22 ASP n 1 23 PHE n 1 24 ASN n 1 25 ILE n 1 26 HIS n 1 27 TYR n 1 28 ASN n 1 29 GLU n 1 30 ALA n 1 31 GLY n 1 32 ASN n 1 33 GLY n 1 34 GLU n 1 35 THR n 1 36 VAL n 1 37 ILE n 1 38 MET n 1 39 LEU n 1 40 HIS n 1 41 GLY n 1 42 GLY n 1 43 GLY n 1 44 PRO n 1 45 GLY n 1 46 ALA n 1 47 GLY n 1 48 GLY n 1 49 TRP n 1 50 SER n 1 51 ASN n 1 52 TYR n 1 53 TYR n 1 54 ARG n 1 55 ASN n 1 56 VAL n 1 57 GLY n 1 58 PRO n 1 59 PHE n 1 60 VAL n 1 61 ASP n 1 62 ALA n 1 63 GLY n 1 64 TYR n 1 65 ARG n 1 66 VAL n 1 67 ILE n 1 68 LEU n 1 69 LYS n 1 70 ASP n 1 71 SER n 1 72 PRO n 1 73 GLY n 1 74 PHE n 1 75 ASN n 1 76 LYS n 1 77 SER n 1 78 ASP n 1 79 ALA n 1 80 VAL n 1 81 VAL n 1 82 MET n 1 83 ASP n 1 84 GLU n 1 85 GLN n 1 86 ARG n 1 87 GLY n 1 88 LEU n 1 89 VAL n 1 90 ASN n 1 91 ALA n 1 92 ARG n 1 93 ALA n 1 94 VAL n 1 95 LYS n 1 96 GLY n 1 97 LEU n 1 98 MET n 1 99 ASP n 1 100 ALA n 1 101 LEU n 1 102 ASP n 1 103 ILE n 1 104 ASP n 1 105 ARG n 1 106 ALA n 1 107 HIS n 1 108 LEU n 1 109 VAL n 1 110 GLY n 1 111 ASN n 1 112 ALA n 1 113 MET n 1 114 GLY n 1 115 GLY n 1 116 ALA n 1 117 THR n 1 118 ALA n 1 119 LEU n 1 120 ASN n 1 121 PHE n 1 122 ALA n 1 123 LEU n 1 124 GLU n 1 125 TYR n 1 126 PRO n 1 127 ASP n 1 128 ARG n 1 129 ILE n 1 130 GLY n 1 131 LYS n 1 132 LEU n 1 133 ILE n 1 134 LEU n 1 135 MET n 1 136 GLY n 1 137 PRO n 1 138 GLY n 1 139 GLY n 1 140 LEU n 1 141 GLY n 1 142 PRO n 1 143 SER n 1 144 MET n 1 145 PHE n 1 146 ALA n 1 147 PRO n 1 148 MET n 1 149 PRO n 1 150 MET n 1 151 GLU n 1 152 GLY n 1 153 ILE n 1 154 LYS n 1 155 LEU n 1 156 LEU n 1 157 PHE n 1 158 LYS n 1 159 LEU n 1 160 TYR n 1 161 ALA n 1 162 GLU n 1 163 PRO n 1 164 SER n 1 165 TYR n 1 166 GLU n 1 167 THR n 1 168 LEU n 1 169 LYS n 1 170 GLN n 1 171 MET n 1 172 LEU n 1 173 GLN n 1 174 VAL n 1 175 PHE n 1 176 LEU n 1 177 TYR n 1 178 ASP n 1 179 GLN n 1 180 SER n 1 181 LEU n 1 182 ILE n 1 183 THR n 1 184 GLU n 1 185 GLU n 1 186 LEU n 1 187 LEU n 1 188 GLN n 1 189 GLY n 1 190 ARG n 1 191 TRP n 1 192 GLU n 1 193 ALA n 1 194 ILE n 1 195 GLN n 1 196 ARG n 1 197 GLN n 1 198 PRO n 1 199 GLU n 1 200 HIS n 1 201 LEU n 1 202 LYS n 1 203 ASN n 1 204 PHE n 1 205 LEU n 1 206 ILE n 1 207 SER n 1 208 ALA n 1 209 GLN n 1 210 LYS n 1 211 ALA n 1 212 PRO n 1 213 LEU n 1 214 SER n 1 215 THR n 1 216 TRP n 1 217 ASP n 1 218 VAL n 1 219 THR n 1 220 ALA n 1 221 ARG n 1 222 LEU n 1 223 GLY n 1 224 GLU n 1 225 ILE n 1 226 LYS n 1 227 ALA n 1 228 LYS n 1 229 THR n 1 230 PHE n 1 231 ILE n 1 232 THR n 1 233 TRP n 1 234 GLY n 1 235 ARG n 1 236 ASP n 1 237 ASP n 1 238 ARG n 1 239 PHE n 1 240 VAL n 1 241 PRO n 1 242 LEU n 1 243 ASP n 1 244 HIS n 1 245 GLY n 1 246 LEU n 1 247 LYS n 1 248 LEU n 1 249 LEU n 1 250 TRP n 1 251 ASN n 1 252 ILE n 1 253 ASP n 1 254 ASP n 1 255 ALA n 1 256 ARG n 1 257 LEU n 1 258 HIS n 1 259 VAL n 1 260 PHE n 1 261 SER n 1 262 LYS n 1 263 CYS n 1 264 GLY n 1 265 HIS n 1 266 TRP n 1 267 ALA n 1 268 GLN n 1 269 TRP n 1 270 GLU n 1 271 HIS n 1 272 ALA n 1 273 ASP n 1 274 GLU n 1 275 PHE n 1 276 ASN n 1 277 ARG n 1 278 LEU n 1 279 VAL n 1 280 ILE n 1 281 ASP n 1 282 PHE n 1 283 LEU n 1 284 ARG n 1 285 HIS n 1 286 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name bacteria _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene bphD _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain LB400 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Burkholderia xenovorans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name bacteria _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BPHD_BURXL _struct_ref.pdbx_db_accession P47229 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LTESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMD EQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEP SYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLD HGLKLLWNIDDARLHVFSKCGHWAQWEHADEFNRLVIDFLRHA ; _struct_ref.pdbx_align_begin 4 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2PU6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 286 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P47229 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 286 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 286 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2PU6 _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 112 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P47229 _struct_ref_seq_dif.db_mon_id SER _struct_ref_seq_dif.pdbx_seq_db_seq_num 112 _struct_ref_seq_dif.details ENGINEERED _struct_ref_seq_dif.pdbx_auth_seq_num 112 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLI non-polymer . 'MALONATE ION' ? 'C3 H2 O4 -2' 102.046 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2PU6 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '1.9 M sodium malonate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2005-06-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID # _reflns.entry_id 2PU6 _reflns.observed_criterion_sigma_F 2.00 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 1.68 _reflns.d_resolution_low 50.0 _reflns.number_all ? _reflns.number_obs 34855 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 12.6 _reflns.pdbx_netI_over_av_sigmaI 18.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_netI_over_sigmaI ? # _reflns_shell.d_res_high 1.68 _reflns_shell.d_res_low 1.723 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 8.5 _reflns_shell.pdbx_Rsym_value 27.1 _reflns_shell.pdbx_redundancy 11.8 _reflns_shell.number_unique_all 3424 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2PU6 _refine.ls_d_res_high 1.680 _refine.ls_d_res_low 45.0 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.750 _refine.ls_number_reflns_obs 34845 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.174 _refine.ls_R_factor_R_work 0.172 _refine.ls_R_factor_R_free 0.200 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1752 _refine.B_iso_mean 17.841 _refine.aniso_B[1][1] 0.220 _refine.aniso_B[2][2] 0.220 _refine.aniso_B[3][3] -0.440 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.pdbx_overall_ESU_R 0.095 _refine.pdbx_overall_ESU_R_Free 0.093 _refine.overall_SU_ML 0.061 _refine.overall_SU_B 1.796 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 33093 _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ENTRY 2OG1' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2PU6 _refine_analyze.Luzzati_coordinate_error_obs 0.173 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2264 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 143 _refine_hist.number_atoms_total 2422 _refine_hist.d_res_high 1.680 _refine_hist.d_res_low 45.0 _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2339 0.010 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3172 1.200 1.956 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 294 5.502 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 110 38.853 23.909 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 395 13.853 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14 17.040 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 335 0.083 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1811 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1133 0.203 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1577 0.308 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 114 0.120 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 4 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 51 0.199 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 15 0.181 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 1 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1417 3.842 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2269 5.758 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 965 9.370 2.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 897 11.654 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.68 _refine_ls_shell.d_res_low 1.723 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.820 _refine_ls_shell.number_reflns_R_work 2385 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.209 _refine_ls_shell.R_factor_R_free 0.278 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 120 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 2505 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2PU6 _struct.title 'Crystal Structure of S112A mutant of a C-C hydrolase, BphD from Burkholderia xenovorans LB400' _struct.pdbx_descriptor '2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (E.C.3.7.1.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PU6 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'C-C bond hydrolase, Structural Genomics, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ;The biological assembly is a tetramer generated from the monomer in the asymmetric unit by the operations: x, y, z; -x+1/2, -y+1/2, z+1/2; -y, x+1/2, z+1/4; y+1/2, -x, z+3/4; ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 5 ? THR A 9 ? THR A 5 THR A 9 1 ? 5 HELX_P HELX_P2 2 GLY A 47 ? TYR A 53 ? GLY A 47 TYR A 53 1 ? 7 HELX_P HELX_P3 3 ASN A 55 ? ALA A 62 ? ASN A 55 ALA A 62 1 ? 8 HELX_P HELX_P4 4 GLN A 85 ? LEU A 101 ? GLN A 85 LEU A 101 1 ? 17 HELX_P HELX_P5 5 ALA A 112 ? TYR A 125 ? ALA A 112 TYR A 125 1 ? 14 HELX_P HELX_P6 6 MET A 150 ? GLU A 162 ? MET A 150 GLU A 162 1 ? 13 HELX_P HELX_P7 7 SER A 164 ? LEU A 176 ? SER A 164 LEU A 176 1 ? 13 HELX_P HELX_P8 8 ASP A 178 ? ILE A 182 ? ASP A 178 ILE A 182 5 ? 5 HELX_P HELX_P9 9 THR A 183 ? GLN A 197 ? THR A 183 GLN A 197 1 ? 15 HELX_P HELX_P10 10 GLN A 197 ? ALA A 211 ? GLN A 197 ALA A 211 1 ? 15 HELX_P HELX_P11 11 PRO A 212 ? TRP A 216 ? PRO A 212 TRP A 216 5 ? 5 HELX_P HELX_P12 12 VAL A 218 ? ILE A 225 ? VAL A 218 ILE A 225 5 ? 8 HELX_P HELX_P13 13 LEU A 242 ? ILE A 252 ? LEU A 242 ILE A 252 1 ? 11 HELX_P HELX_P14 14 TRP A 266 ? HIS A 271 ? TRP A 266 HIS A 271 1 ? 6 HELX_P HELX_P15 15 HIS A 271 ? ALA A 286 ? HIS A 271 ALA A 286 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id MET _struct_mon_prot_cis.label_seq_id 148 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id MET _struct_mon_prot_cis.auth_seq_id 148 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 149 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 149 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 7.20 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 10 ? GLU A 17 ? SER A 10 GLU A 17 A 2 PHE A 20 ? ALA A 30 ? PHE A 20 ALA A 30 A 3 ARG A 65 ? LYS A 69 ? ARG A 65 LYS A 69 A 4 THR A 35 ? LEU A 39 ? THR A 35 LEU A 39 A 5 ALA A 106 ? ASN A 111 ? ALA A 106 ASN A 111 A 6 ILE A 129 ? MET A 135 ? ILE A 129 MET A 135 A 7 THR A 229 ? GLY A 234 ? THR A 229 GLY A 234 A 8 ALA A 255 ? PHE A 260 ? ALA A 255 PHE A 260 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 17 ? N GLU A 17 O PHE A 20 ? O PHE A 20 A 2 3 N ASN A 28 ? N ASN A 28 O LEU A 68 ? O LEU A 68 A 3 4 O ARG A 65 ? O ARG A 65 N VAL A 36 ? N VAL A 36 A 4 5 N LEU A 39 ? N LEU A 39 O VAL A 109 ? O VAL A 109 A 5 6 N LEU A 108 ? N LEU A 108 O ILE A 133 ? O ILE A 133 A 6 7 N LEU A 134 ? N LEU A 134 O THR A 232 ? O THR A 232 A 7 8 N ILE A 231 ? N ILE A 231 O ARG A 256 ? O ARG A 256 # _atom_sites.entry_id 2PU6 _atom_sites.fract_transf_matrix[1][1] 0.008526 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008526 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011454 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 ALA 3 3 ? ? ? A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 HIS 26 26 26 HIS HIS A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 MET 38 38 38 MET MET A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 TRP 49 49 49 TRP TRP A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 GLN 85 85 85 GLN GLN A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 MET 98 98 98 MET MET A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 HIS 107 107 107 HIS HIS A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 MET 113 113 113 MET MET A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 ASN 120 120 120 ASN ASN A . n A 1 121 PHE 121 121 121 PHE PHE A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 TYR 125 125 125 TYR TYR A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 MET 135 135 135 MET MET A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 PRO 137 137 137 PRO PRO A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 PRO 142 142 142 PRO PRO A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 MET 144 144 144 MET MET A . n A 1 145 PHE 145 145 145 PHE PHE A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 PRO 147 147 147 PRO PRO A . n A 1 148 MET 148 148 148 MET MET A . n A 1 149 PRO 149 149 149 PRO PRO A . n A 1 150 MET 150 150 150 MET MET A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 PHE 157 157 157 PHE PHE A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 TYR 160 160 160 TYR TYR A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 PRO 163 163 163 PRO PRO A . n A 1 164 SER 164 164 164 SER SER A . n A 1 165 TYR 165 165 165 TYR TYR A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 LEU 168 168 168 LEU LEU A . n A 1 169 LYS 169 169 169 LYS LYS A . n A 1 170 GLN 170 170 170 GLN GLN A . n A 1 171 MET 171 171 171 MET MET A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 GLN 173 173 173 GLN GLN A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 PHE 175 175 175 PHE PHE A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 TYR 177 177 177 TYR TYR A . n A 1 178 ASP 178 178 178 ASP ASP A . n A 1 179 GLN 179 179 179 GLN GLN A . n A 1 180 SER 180 180 180 SER SER A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 ILE 182 182 182 ILE ILE A . n A 1 183 THR 183 183 183 THR THR A . n A 1 184 GLU 184 184 184 GLU GLU A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 LEU 186 186 186 LEU LEU A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 GLN 188 188 188 GLN GLN A . n A 1 189 GLY 189 189 189 GLY GLY A . n A 1 190 ARG 190 190 190 ARG ARG A . n A 1 191 TRP 191 191 191 TRP TRP A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 ALA 193 193 193 ALA ALA A . n A 1 194 ILE 194 194 194 ILE ILE A . n A 1 195 GLN 195 195 195 GLN GLN A . n A 1 196 ARG 196 196 196 ARG ARG A . n A 1 197 GLN 197 197 197 GLN GLN A . n A 1 198 PRO 198 198 198 PRO PRO A . n A 1 199 GLU 199 199 199 GLU GLU A . n A 1 200 HIS 200 200 200 HIS HIS A . n A 1 201 LEU 201 201 201 LEU LEU A . n A 1 202 LYS 202 202 202 LYS LYS A . n A 1 203 ASN 203 203 203 ASN ASN A . n A 1 204 PHE 204 204 204 PHE PHE A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 ILE 206 206 206 ILE ILE A . n A 1 207 SER 207 207 207 SER SER A . n A 1 208 ALA 208 208 208 ALA ALA A . n A 1 209 GLN 209 209 209 GLN GLN A . n A 1 210 LYS 210 210 210 LYS LYS A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 PRO 212 212 212 PRO PRO A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 SER 214 214 214 SER SER A . n A 1 215 THR 215 215 215 THR THR A . n A 1 216 TRP 216 216 216 TRP TRP A . n A 1 217 ASP 217 217 217 ASP ASP A . n A 1 218 VAL 218 218 218 VAL VAL A . n A 1 219 THR 219 219 219 THR THR A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 ARG 221 221 221 ARG ARG A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 GLY 223 223 223 GLY GLY A . n A 1 224 GLU 224 224 224 GLU GLU A . n A 1 225 ILE 225 225 225 ILE ILE A . n A 1 226 LYS 226 226 226 LYS LYS A . n A 1 227 ALA 227 227 227 ALA ALA A . n A 1 228 LYS 228 228 228 LYS LYS A . n A 1 229 THR 229 229 229 THR THR A . n A 1 230 PHE 230 230 230 PHE PHE A . n A 1 231 ILE 231 231 231 ILE ILE A . n A 1 232 THR 232 232 232 THR THR A . n A 1 233 TRP 233 233 233 TRP TRP A . n A 1 234 GLY 234 234 234 GLY GLY A . n A 1 235 ARG 235 235 235 ARG ARG A . n A 1 236 ASP 236 236 236 ASP ASP A . n A 1 237 ASP 237 237 237 ASP ASP A . n A 1 238 ARG 238 238 238 ARG ARG A . n A 1 239 PHE 239 239 239 PHE PHE A . n A 1 240 VAL 240 240 240 VAL VAL A . n A 1 241 PRO 241 241 241 PRO PRO A . n A 1 242 LEU 242 242 242 LEU LEU A . n A 1 243 ASP 243 243 243 ASP ASP A . n A 1 244 HIS 244 244 244 HIS HIS A . n A 1 245 GLY 245 245 245 GLY GLY A . n A 1 246 LEU 246 246 246 LEU LEU A . n A 1 247 LYS 247 247 247 LYS LYS A . n A 1 248 LEU 248 248 248 LEU LEU A . n A 1 249 LEU 249 249 249 LEU LEU A . n A 1 250 TRP 250 250 250 TRP TRP A . n A 1 251 ASN 251 251 251 ASN ASN A . n A 1 252 ILE 252 252 252 ILE ILE A . n A 1 253 ASP 253 253 253 ASP ASP A . n A 1 254 ASP 254 254 254 ASP ASP A . n A 1 255 ALA 255 255 255 ALA ALA A . n A 1 256 ARG 256 256 256 ARG ARG A . n A 1 257 LEU 257 257 257 LEU LEU A . n A 1 258 HIS 258 258 258 HIS HIS A . n A 1 259 VAL 259 259 259 VAL VAL A . n A 1 260 PHE 260 260 260 PHE PHE A . n A 1 261 SER 261 261 261 SER SER A . n A 1 262 LYS 262 262 262 LYS LYS A . n A 1 263 CYS 263 263 263 CYS CYS A . n A 1 264 GLY 264 264 264 GLY GLY A . n A 1 265 HIS 265 265 265 HIS HIS A . n A 1 266 TRP 266 266 266 TRP TRP A . n A 1 267 ALA 267 267 267 ALA ALA A . n A 1 268 GLN 268 268 268 GLN GLN A . n A 1 269 TRP 269 269 269 TRP TRP A . n A 1 270 GLU 270 270 270 GLU GLU A . n A 1 271 HIS 271 271 271 HIS HIS A . n A 1 272 ALA 272 272 272 ALA ALA A . n A 1 273 ASP 273 273 273 ASP ASP A . n A 1 274 GLU 274 274 274 GLU GLU A . n A 1 275 PHE 275 275 275 PHE PHE A . n A 1 276 ASN 276 276 276 ASN ASN A . n A 1 277 ARG 277 277 277 ARG ARG A . n A 1 278 LEU 278 278 278 LEU LEU A . n A 1 279 VAL 279 279 279 VAL VAL A . n A 1 280 ILE 280 280 280 ILE ILE A . n A 1 281 ASP 281 281 281 ASP ASP A . n A 1 282 PHE 282 282 282 PHE PHE A . n A 1 283 LEU 283 283 283 LEU LEU A . n A 1 284 ARG 284 284 284 ARG ARG A . n A 1 285 HIS 285 285 285 HIS HIS A . n A 1 286 ALA 286 286 286 ALA ALA A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center ? _pdbx_SG_project.initial_of_center ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 200 200 NA NA ? . C 3 MLI 1 201 201 MLI MLI ? . D 3 MLI 1 202 202 MLI MLI ? . E 4 HOH 1 1 1 HOH HOH ? . E 4 HOH 2 2 2 HOH HOH ? . E 4 HOH 3 3 3 HOH HOH ? . E 4 HOH 4 4 4 HOH HOH ? . E 4 HOH 5 5 5 HOH HOH ? . E 4 HOH 6 6 6 HOH HOH ? . E 4 HOH 7 7 7 HOH HOH ? . E 4 HOH 8 8 8 HOH HOH ? . E 4 HOH 9 9 9 HOH HOH ? . E 4 HOH 10 10 10 HOH HOH ? . E 4 HOH 11 11 11 HOH HOH ? . E 4 HOH 12 12 12 HOH HOH ? . E 4 HOH 13 13 13 HOH HOH ? . E 4 HOH 14 14 14 HOH HOH ? . E 4 HOH 15 15 15 HOH HOH ? . E 4 HOH 16 16 16 HOH HOH ? . E 4 HOH 17 17 17 HOH HOH ? . E 4 HOH 18 18 18 HOH HOH ? . E 4 HOH 19 19 19 HOH HOH ? . E 4 HOH 20 20 20 HOH HOH ? . E 4 HOH 21 21 21 HOH HOH ? . E 4 HOH 22 22 22 HOH HOH ? . E 4 HOH 23 23 23 HOH HOH ? . E 4 HOH 24 24 24 HOH HOH ? . E 4 HOH 25 25 25 HOH HOH ? . E 4 HOH 26 26 26 HOH HOH ? . E 4 HOH 27 27 27 HOH HOH ? . E 4 HOH 28 28 28 HOH HOH ? . E 4 HOH 29 29 29 HOH HOH ? . E 4 HOH 30 30 30 HOH HOH ? . E 4 HOH 31 31 31 HOH HOH ? . E 4 HOH 32 32 32 HOH HOH ? . E 4 HOH 33 33 33 HOH HOH ? . E 4 HOH 34 34 34 HOH HOH ? . E 4 HOH 35 35 35 HOH HOH ? . E 4 HOH 36 36 36 HOH HOH ? . E 4 HOH 37 37 37 HOH HOH ? . E 4 HOH 38 38 38 HOH HOH ? . E 4 HOH 39 39 39 HOH HOH ? . E 4 HOH 40 40 40 HOH HOH ? . E 4 HOH 41 41 41 HOH HOH ? . E 4 HOH 42 42 42 HOH HOH ? . E 4 HOH 43 43 43 HOH HOH ? . E 4 HOH 44 44 44 HOH HOH ? . E 4 HOH 45 45 45 HOH HOH ? . E 4 HOH 46 46 46 HOH HOH ? . E 4 HOH 47 47 47 HOH HOH ? . E 4 HOH 48 48 48 HOH HOH ? . E 4 HOH 49 49 49 HOH HOH ? . E 4 HOH 50 50 50 HOH HOH ? . E 4 HOH 51 51 51 HOH HOH ? . E 4 HOH 52 52 52 HOH HOH ? . E 4 HOH 53 53 53 HOH HOH ? . E 4 HOH 54 54 54 HOH HOH ? . E 4 HOH 55 55 55 HOH HOH ? . E 4 HOH 56 56 56 HOH HOH ? . E 4 HOH 57 57 57 HOH HOH ? . E 4 HOH 58 58 58 HOH HOH ? . E 4 HOH 59 59 59 HOH HOH ? . E 4 HOH 60 60 60 HOH HOH ? . E 4 HOH 61 61 61 HOH HOH ? . E 4 HOH 62 62 62 HOH HOH ? . E 4 HOH 63 63 63 HOH HOH ? . E 4 HOH 64 64 64 HOH HOH ? . E 4 HOH 65 65 65 HOH HOH ? . E 4 HOH 66 66 66 HOH HOH ? . E 4 HOH 67 67 67 HOH HOH ? . E 4 HOH 68 68 68 HOH HOH ? . E 4 HOH 69 69 69 HOH HOH ? . E 4 HOH 70 70 70 HOH HOH ? . E 4 HOH 71 71 71 HOH HOH ? . E 4 HOH 72 72 72 HOH HOH ? . E 4 HOH 73 73 73 HOH HOH ? . E 4 HOH 74 74 74 HOH HOH ? . E 4 HOH 75 75 75 HOH HOH ? . E 4 HOH 76 76 76 HOH HOH ? . E 4 HOH 77 77 77 HOH HOH ? . E 4 HOH 78 78 78 HOH HOH ? . E 4 HOH 79 79 79 HOH HOH ? . E 4 HOH 80 80 80 HOH HOH ? . E 4 HOH 81 81 81 HOH HOH ? . E 4 HOH 82 82 82 HOH HOH ? . E 4 HOH 83 83 83 HOH HOH ? . E 4 HOH 84 84 84 HOH HOH ? . E 4 HOH 85 85 85 HOH HOH ? . E 4 HOH 86 86 86 HOH HOH ? . E 4 HOH 87 87 87 HOH HOH ? . E 4 HOH 88 88 88 HOH HOH ? . E 4 HOH 89 89 89 HOH HOH ? . E 4 HOH 90 90 90 HOH HOH ? . E 4 HOH 91 91 91 HOH HOH ? . E 4 HOH 92 92 92 HOH HOH ? . E 4 HOH 93 93 93 HOH HOH ? . E 4 HOH 94 94 94 HOH HOH ? . E 4 HOH 95 95 95 HOH HOH ? . E 4 HOH 96 96 96 HOH HOH ? . E 4 HOH 97 97 97 HOH HOH ? . E 4 HOH 98 98 98 HOH HOH ? . E 4 HOH 99 99 99 HOH HOH ? . E 4 HOH 100 100 100 HOH HOH ? . E 4 HOH 101 101 101 HOH HOH ? . E 4 HOH 102 102 102 HOH HOH ? . E 4 HOH 103 103 103 HOH HOH ? . E 4 HOH 104 104 104 HOH HOH ? . E 4 HOH 105 105 105 HOH HOH ? . E 4 HOH 106 106 106 HOH HOH ? . E 4 HOH 107 107 107 HOH HOH ? . E 4 HOH 108 108 108 HOH HOH ? . E 4 HOH 109 109 109 HOH HOH ? . E 4 HOH 110 110 110 HOH HOH ? . E 4 HOH 111 111 111 HOH HOH ? . E 4 HOH 112 112 112 HOH HOH ? . E 4 HOH 113 113 113 HOH HOH ? . E 4 HOH 114 114 114 HOH HOH ? . E 4 HOH 115 115 115 HOH HOH ? . E 4 HOH 116 116 116 HOH HOH ? . E 4 HOH 117 117 117 HOH HOH ? . E 4 HOH 118 118 118 HOH HOH ? . E 4 HOH 119 119 119 HOH HOH ? . E 4 HOH 120 120 120 HOH HOH ? . E 4 HOH 121 121 121 HOH HOH ? . E 4 HOH 122 122 122 HOH HOH ? . E 4 HOH 123 123 123 HOH HOH ? . E 4 HOH 124 124 124 HOH HOH ? . E 4 HOH 125 125 125 HOH HOH ? . E 4 HOH 126 126 126 HOH HOH ? . E 4 HOH 127 127 127 HOH HOH ? . E 4 HOH 128 128 128 HOH HOH ? . E 4 HOH 129 129 129 HOH HOH ? . E 4 HOH 130 130 130 HOH HOH ? . E 4 HOH 131 131 131 HOH HOH ? . E 4 HOH 132 132 132 HOH HOH ? . E 4 HOH 133 133 133 HOH HOH ? . E 4 HOH 134 134 134 HOH HOH ? . E 4 HOH 135 135 135 HOH HOH ? . E 4 HOH 136 136 136 HOH HOH ? . E 4 HOH 137 137 137 HOH HOH ? . E 4 HOH 138 138 138 HOH HOH ? . E 4 HOH 139 139 139 HOH HOH ? . E 4 HOH 140 140 140 HOH HOH ? . E 4 HOH 141 141 141 HOH HOH ? . E 4 HOH 142 142 142 HOH HOH ? . E 4 HOH 143 143 143 HOH HOH ? . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-05-22 2 'Structure model' 1 1 2007-11-06 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal HKL . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data processing' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 REFMAC5 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 In 'House Data Collection Software' ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL . ? ? ? ? 'data scaling' ? ? ? 6 MOLREP . ? ? ? ? phasing ? ? ? 7 REFMAC 5.2.0019 ? ? ? ? refinement ? ? ? 8 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 18 ? ? -1.23 93.97 2 1 ASN A 75 ? ? 48.17 -124.08 3 1 ALA A 112 ? ? 64.93 -117.98 4 1 LEU A 140 ? ? -74.78 33.99 5 1 PHE A 145 ? ? -130.13 -35.86 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A ALA 3 ? A ALA 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'MALONATE ION' MLI 4 water HOH #