HEADER ELECTRON TRANSPORT 09-MAY-07 2PU9 TITLE CRYSTAL SRTUCTURE OF THE BINARY COMPLEX BETWEEN FERREDOXIN: TITLE 2 THIOREDOXIN REDUCTASE AND THIOREDOXIN F COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN-THIOREDOXIN REDUCTASE, CATALYTIC CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FERREDOXIN-THIOREDOXIN REDUCTASE, VARIABLE CHAIN; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: FTR-V, FERREDOXIN- THIOREDOXIN REDUCTASE SUBUNIT A; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: THIOREDOXIN F-TYPE, CHLOROPLAST; COMPND 12 CHAIN: C; COMPND 13 SYNONYM: TRX-F; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; SOURCE 3 ORGANISM_TAXID: 1143; SOURCE 4 GENE: FTRC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-3C; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; SOURCE 12 ORGANISM_TAXID: 1143; SOURCE 13 GENE: FTRV; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET-3C; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: SPINACIA OLERACEA; SOURCE 21 ORGANISM_COMMON: SPINACH; SOURCE 22 ORGANISM_TAXID: 3562; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PET-3C KEYWDS THIOREDOXIN, PROTEIN-PROTEIN COMPLEX, REDOX, IRON-SULFUR, ELECTRON KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.DAI REVDAT 5 20-OCT-21 2PU9 1 REMARK SEQADV REVDAT 4 18-OCT-17 2PU9 1 REMARK REVDAT 3 24-FEB-09 2PU9 1 VERSN REVDAT 2 14-AUG-07 2PU9 1 JRNL REVDAT 1 10-JUL-07 2PU9 0 JRNL AUTH S.DAI,R.FRIEMANN,D.A.GLAUSER,F.BOURQUIN,W.MANIERI, JRNL AUTH 2 P.SCHURMANN,H.EKLUND JRNL TITL STRUCTURAL SNAPSHOTS ALONG THE REACTION PATHWAY OF JRNL TITL 2 FERREDOXIN-THIOREDOXIN REDUCTASE. JRNL REF NATURE V. 448 92 2007 JRNL REFN ISSN 0028-0836 JRNL PMID 17611542 JRNL DOI 10.1038/NATURE05937 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 500.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 33478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1658 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 33 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 786 REMARK 3 BIN R VALUE (WORKING SET) : 0.4280 REMARK 3 BIN FREE R VALUE : 0.4490 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 44 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2335 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.57100 REMARK 3 B22 (A**2) : 1.15200 REMARK 3 B33 (A**2) : -0.58200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 49.79 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 4 : FS4.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33522 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.66200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.66100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.84900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.39400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.84900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.66100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.39400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 30.66100 REMARK 350 BIOMT2 1 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 -34.84900 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 70 -3.99 67.42 REMARK 500 PRO A 93 16.32 -58.21 REMARK 500 HIS B 21 41.63 -143.81 REMARK 500 LYS B 23 17.63 58.39 REMARK 500 PHE B 57 -159.87 -120.02 REMARK 500 LYS C 30 31.96 -84.32 REMARK 500 ALA C 31 2.94 -158.54 REMARK 500 TRP C 45 50.59 -100.16 REMARK 500 ASN C 74 -165.98 -109.83 REMARK 500 ARG C 87 -51.12 -122.57 REMARK 500 GLU C 97 38.86 72.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 55 SG REMARK 620 2 SF4 A 400 S1 95.7 REMARK 620 3 SF4 A 400 S3 105.7 105.6 REMARK 620 4 SF4 A 400 S4 140.8 99.4 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 74 SG REMARK 620 2 SF4 A 400 S1 112.1 REMARK 620 3 SF4 A 400 S2 112.1 104.4 REMARK 620 4 SF4 A 400 S4 119.6 101.4 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 76 SG REMARK 620 2 SF4 A 400 S1 113.9 REMARK 620 3 SF4 A 400 S2 113.0 105.2 REMARK 620 4 SF4 A 400 S3 110.3 107.3 106.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 85 SG REMARK 620 2 SF4 A 400 S2 117.0 REMARK 620 3 SF4 A 400 S3 107.9 106.7 REMARK 620 4 SF4 A 400 S4 112.5 105.8 106.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 400 DBREF 2PU9 A 8 117 UNP Q55389 Q55389_SYNY3 9 118 DBREF 2PU9 B 1 74 UNP Q55781 FTRV_SYNY3 1 74 DBREF 2PU9 C 11 121 UNP P09856 TRXF_SPIOL 79 189 SEQADV 2PU9 SER C 49 UNP P09856 CYS 117 ENGINEERED MUTATION SEQRES 1 A 110 ASN LYS THR LEU ALA ALA MET LYS ASN PHE ALA GLU GLN SEQRES 2 A 110 TYR ALA LYS ARG THR ASP THR TYR PHE CYS SER ASP LEU SEQRES 3 A 110 SER VAL THR ALA VAL VAL ILE GLU GLY LEU ALA ARG HIS SEQRES 4 A 110 LYS GLU GLU LEU GLY SER PRO LEU CYS PRO CYS ARG HIS SEQRES 5 A 110 TYR GLU ASP LYS GLU ALA GLU VAL LYS ASN THR PHE TRP SEQRES 6 A 110 ASN CYS PRO CYS VAL PRO MET ARG GLU ARG LYS GLU CYS SEQRES 7 A 110 HIS CYS MET LEU PHE LEU THR PRO ASP ASN ASP PHE ALA SEQRES 8 A 110 GLY ASP ALA GLN ASP ILE PRO MET GLU THR LEU GLU GLU SEQRES 9 A 110 VAL LYS ALA SER MET ALA SEQRES 1 B 74 MET ASN VAL GLY ASP ARG VAL ARG VAL THR SER SER VAL SEQRES 2 B 74 VAL VAL TYR HIS HIS PRO GLU HIS LYS LYS THR ALA PHE SEQRES 3 B 74 ASP LEU GLN GLY MET GLU GLY GLU VAL ALA ALA VAL LEU SEQRES 4 B 74 THR GLU TRP GLN GLY ARG PRO ILE SER ALA ASN LEU PRO SEQRES 5 B 74 VAL LEU VAL LYS PHE GLU GLN ARG PHE LYS ALA HIS PHE SEQRES 6 B 74 ARG PRO ASP GLU VAL THR LEU ILE GLU SEQRES 1 C 111 GLU ALA ILE VAL GLY LYS VAL THR GLU VAL ASN LYS ASP SEQRES 2 C 111 THR PHE TRP PRO ILE VAL LYS ALA ALA GLY ASP LYS PRO SEQRES 3 C 111 VAL VAL LEU ASP MET PHE THR GLN TRP CYS GLY PRO SER SEQRES 4 C 111 LYS ALA MET ALA PRO LYS TYR GLU LYS LEU ALA GLU GLU SEQRES 5 C 111 TYR LEU ASP VAL ILE PHE LEU LYS LEU ASP CYS ASN GLN SEQRES 6 C 111 GLU ASN LYS THR LEU ALA LYS GLU LEU GLY ILE ARG VAL SEQRES 7 C 111 VAL PRO THR PHE LYS ILE LEU LYS GLU ASN SER VAL VAL SEQRES 8 C 111 GLY GLU VAL THR GLY ALA LYS TYR ASP LYS LEU LEU GLU SEQRES 9 C 111 ALA ILE GLN ALA ALA ARG SER HET SO4 A 301 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SF4 A 400 8 HET SO4 C 302 5 HET SO4 C 306 5 HETNAM SO4 SULFATE ION HETNAM SF4 IRON/SULFUR CLUSTER FORMUL 4 SO4 6(O4 S 2-) FORMUL 8 SF4 FE4 S4 FORMUL 11 HOH *294(H2 O) HELIX 1 1 ASN A 8 ASP A 26 1 19 HELIX 2 2 ASP A 32 GLY A 51 1 20 HELIX 3 3 ASP A 62 THR A 70 1 9 HELIX 4 4 CYS A 76 LYS A 83 1 8 HELIX 5 5 PRO A 105 MET A 116 1 12 HELIX 6 6 GLU B 58 ARG B 60 5 3 HELIX 7 7 ARG B 66 ASP B 68 5 3 HELIX 8 8 THR C 24 LYS C 30 1 7 HELIX 9 9 CYS C 46 TYR C 63 1 18 HELIX 10 10 ASN C 77 GLY C 85 1 9 HELIX 11 11 LYS C 108 SER C 121 1 14 SHEET 1 A 5 LYS B 62 PHE B 65 0 SHEET 2 A 5 VAL B 53 LYS B 56 -1 N VAL B 53 O PHE B 65 SHEET 3 A 5 GLU B 32 VAL B 38 -1 N ALA B 36 O LEU B 54 SHEET 4 A 5 ARG B 6 VAL B 9 -1 N VAL B 7 O GLY B 33 SHEET 5 A 5 VAL B 70 LEU B 72 -1 O THR B 71 N ARG B 8 SHEET 1 B 2 VAL B 14 VAL B 15 0 SHEET 2 B 2 PHE B 26 ASP B 27 -1 O PHE B 26 N VAL B 15 SHEET 1 C 2 GLU B 41 TRP B 42 0 SHEET 2 C 2 ARG B 45 PRO B 46 -1 O ARG B 45 N TRP B 42 SHEET 1 D 5 VAL C 17 VAL C 20 0 SHEET 2 D 5 ILE C 67 ASP C 72 1 O LYS C 70 N VAL C 20 SHEET 3 D 5 VAL C 37 PHE C 42 1 N VAL C 38 O ILE C 67 SHEET 4 D 5 THR C 91 LEU C 95 -1 O LEU C 95 N VAL C 37 SHEET 5 D 5 VAL C 100 THR C 105 -1 O VAL C 104 N PHE C 92 SSBOND 1 CYS A 57 CYS A 87 1555 1555 2.98 LINK SG CYS A 55 FE2 SF4 A 400 1555 1555 2.45 LINK SG CYS A 74 FE3 SF4 A 400 1555 1555 2.30 LINK SG CYS A 76 FE4 SF4 A 400 1555 1555 2.27 LINK SG CYS A 85 FE1 SF4 A 400 1555 1555 2.33 CISPEP 1 CYS A 74 PRO A 75 0 -0.15 CISPEP 2 VAL C 89 PRO C 90 0 -0.22 SITE 1 AC1 9 HIS A 46 LYS A 63 HOH A 413 HOH A 417 SITE 2 AC1 9 HOH A 418 HOH A 460 HOH A 465 HOH A 509 SITE 3 AC1 9 HOH A 510 SITE 1 AC2 5 ARG A 58 ASN B 50 ARG C 87 VAL C 88 SITE 2 AC2 5 HOH C 344 SITE 1 AC3 4 ARG A 45 HOH A 515 GLN C 44 TRP C 45 SITE 1 AC4 8 GLU A 41 ARG A 45 LYS A 113 HOH A 519 SITE 2 AC4 8 LYS B 56 ARG B 60 LYS B 62 HOH B 129 SITE 1 AC5 5 LYS A 15 ASP A 96 ILE A 104 PRO A 105 SITE 2 AC5 5 MET A 106 SITE 1 AC6 4 ALA C 107 TYR C 109 ASP C 110 HOH C 351 SITE 1 AC7 7 CYS A 55 CYS A 74 CYS A 76 MET A 79 SITE 2 AC7 7 CYS A 85 HIS A 86 CYS A 87 CRYST1 61.322 66.788 69.698 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016307 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014348 0.00000