HEADER TRANSPORT PROTEIN 10-MAY-07 2PVU TITLE CRYSTAL STRUCTURES OF THE ARGININE-, LYSINE-, HISTIDINE-BINDING TITLE 2 PROTEIN ARTJ FROM THE THERMOPHILIC BACTERIUM GEOBACILLUS TITLE 3 STEAROTHERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARTJ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 STRAIN: GEOBACILLUS STEAROTHERMOPHILUS DSMZ 13240; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS BASIC AMINO ACID BINDING PROTEIN, ABC TRANSPORT SYSTEM, THERMOPHILIC KEYWDS 2 BACTERIUM, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.VAHEDI-FARIDI,F.SCHEFFEL,V.ECKEY,W.SAENGER,E.SCHNEIDER REVDAT 4 21-FEB-24 2PVU 1 REMARK REVDAT 3 13-JUL-11 2PVU 1 VERSN REVDAT 2 24-FEB-09 2PVU 1 VERSN REVDAT 1 15-JAN-08 2PVU 0 JRNL AUTH A.VAHEDI-FARIDI,V.ECKEY,F.SCHEFFEL,C.ALINGS,H.LANDMESSER, JRNL AUTH 2 E.SCHNEIDER,W.SAENGER JRNL TITL CRYSTAL STRUCTURES AND MUTATIONAL ANALYSIS OF THE ARGININE-, JRNL TITL 2 LYSINE-, HISTIDINE-BINDING PROTEIN ARTJ FROM GEOBACILLUS JRNL TITL 3 STEAROTHERMOPHILUS. IMPLICATIONS FOR INTERACTIONS OF ARTJ JRNL TITL 4 WITH ITS COGNATE ATP-BINDING CASSETTE TRANSPORTER, ART(MP)2 JRNL REF J.MOL.BIOL. V. 375 448 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18022195 JRNL DOI 10.1016/J.JMB.2007.10.049 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 21953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1178 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1143 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1831 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.23000 REMARK 3 B22 (A**2) : 3.53000 REMARK 3 B33 (A**2) : -2.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.935 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1898 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2560 ; 1.563 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 6.846 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;35.923 ;26.625 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 359 ;15.458 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 4.114 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 282 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1393 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 902 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1325 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 144 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.187 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.081 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1213 ; 1.040 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1894 ; 1.538 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 782 ; 2.893 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 664 ; 4.480 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 106 REMARK 3 RESIDUE RANGE : A 108 A 193 REMARK 3 RESIDUE RANGE : A 194 A 203 REMARK 3 RESIDUE RANGE : A 204 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6949 19.3176 12.1198 REMARK 3 T TENSOR REMARK 3 T11: -0.0689 T22: -0.0873 REMARK 3 T33: -0.0476 T12: 0.0057 REMARK 3 T13: -0.0071 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 1.4817 L22: 0.6098 REMARK 3 L33: 2.4958 L12: 0.0463 REMARK 3 L13: 0.1136 L23: 0.1971 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: -0.0537 S13: -0.0470 REMARK 3 S21: -0.0013 S22: 0.0095 S23: 0.0239 REMARK 3 S31: 0.0517 S32: -0.0687 S33: -0.0530 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PVU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042829. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRIRS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21953 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUMSULFATE, 30.5 % W/V REMARK 280 POLYETHYLENE GLYCOL (PEG) 2000 , PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.34050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.34050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.13400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.94350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.13400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.94350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.34050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.13400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.94350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.34050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.13400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.94350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER GENERATED FROM EITHER REMARK 300 POLYPEPTIDE CHAIN IN THE AU. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 3 REMARK 465 ARG A 4 REMARK 465 SER A 5 REMARK 465 THR A 6 REMARK 465 GLU A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 ASP A 15 REMARK 465 GLY A 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 19 139.91 77.19 REMARK 500 LYS A 20 -90.21 -84.21 REMARK 500 ALA A 30 48.44 -146.90 REMARK 500 PHE A 31 56.39 -153.40 REMARK 500 SER A 85 41.02 -171.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 18 THR A 19 144.51 REMARK 500 THR A 19 LYS A 20 141.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYS A 301 DBREF 2PVU A -20 251 PDB 2PVU 2PVU -20 251 SEQRES 1 A 272 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 272 LEU VAL PRO ARG GLY SER HIS MET GLY GLY GLY ARG SER SEQRES 3 A 272 THR GLU THR SER SER SER SER GLY GLY ASP GLY GLY ALA SEQRES 4 A 272 THR LYS LYS LYS VAL VAL VAL GLY THR ASP ALA ALA PHE SEQRES 5 A 272 ALA PRO PHE GLU TYR MET GLN LYS GLY LYS ILE VAL GLY SEQRES 6 A 272 PHE ASP VAL ASP LEU LEU ASP ALA VAL MET LYS ALA ALA SEQRES 7 A 272 GLY LEU ASP TYR GLU LEU LYS ASN ILE GLY TRP ASP PRO SEQRES 8 A 272 LEU PHE ALA SER LEU GLN SER LYS GLU VAL ASP MET GLY SEQRES 9 A 272 ILE SER GLY ILE THR ILE THR ASP GLU ARG LYS GLN SER SEQRES 10 A 272 TYR ASP PHE SER ASP PRO TYR PHE GLU ALA THR GLN VAL SEQRES 11 A 272 ILE LEU VAL LYS GLN GLY SER PRO VAL LYS ASN ALA LEU SEQRES 12 A 272 ASP LEU LYS GLY LYS THR ILE GLY VAL GLN ASN ALA THR SEQRES 13 A 272 THR GLY GLN GLU ALA ALA GLU LYS LEU PHE GLY LYS GLY SEQRES 14 A 272 PRO HIS ILE LYS LYS PHE GLU THR THR VAL VAL ALA ILE SEQRES 15 A 272 MET GLU LEU LEU ASN GLY GLY VAL ASP ALA VAL ILE THR SEQRES 16 A 272 ASP ASN ALA VAL ALA ASN GLU TYR VAL LYS ASN ASN PRO SEQRES 17 A 272 ASN LYS LYS LEU GLN VAL ILE GLU ASP PRO LYS ASN PHE SEQRES 18 A 272 ALA SER GLU TYR TYR GLY MET ILE PHE PRO LYS ASN SER SEQRES 19 A 272 GLU LEU LYS ALA LYS VAL ASP GLU ALA LEU LYS ASN VAL SEQRES 20 A 272 ILE ASN SER GLY LYS TYR THR GLU ILE TYR LYS LYS TRP SEQRES 21 A 272 PHE GLY LYS GLU PRO LYS LEU ASP ARG LEU LYS GLN HET SO4 A 252 5 HET SO4 A 253 5 HET SO4 A 254 5 HET LYS A 301 10 HETNAM SO4 SULFATE ION HETNAM LYS LYSINE FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 LYS C6 H15 N2 O2 1+ FORMUL 6 HOH *154(H2 O) HELIX 1 1 GLY A 44 GLY A 58 1 15 HELIX 2 2 GLY A 67 SER A 77 1 11 HELIX 3 3 THR A 90 GLN A 95 1 6 HELIX 4 4 ASN A 120 LYS A 125 5 6 HELIX 5 5 THR A 135 GLY A 146 1 12 HELIX 6 6 THR A 156 ASN A 166 1 11 HELIX 7 7 ASN A 176 ASN A 186 1 11 HELIX 8 8 PRO A 187 LYS A 189 5 3 HELIX 9 9 LEU A 215 SER A 229 1 15 HELIX 10 10 GLY A 230 GLY A 241 1 12 HELIX 11 11 LYS A 245 GLN A 251 5 7 SHEET 1 A 3 TYR A 61 ASN A 65 0 SHEET 2 A 3 VAL A 23 THR A 27 1 N VAL A 25 O GLU A 62 SHEET 3 A 3 MET A 82 GLY A 83 1 O MET A 82 N GLY A 26 SHEET 1 B 2 TYR A 36 GLN A 38 0 SHEET 2 B 2 LYS A 41 VAL A 43 -1 O VAL A 43 N TYR A 36 SHEET 1 C 2 TYR A 97 PHE A 99 0 SHEET 2 C 2 ILE A 208 PRO A 210 -1 O PHE A 209 N ASP A 98 SHEET 1 D 2 PHE A 104 ALA A 106 0 SHEET 2 D 2 GLU A 203 TYR A 205 -1 O GLU A 203 N ALA A 106 SHEET 1 E 5 ILE A 151 PHE A 154 0 SHEET 2 E 5 ILE A 129 GLN A 132 1 N ILE A 129 O LYS A 152 SHEET 3 E 5 ALA A 171 ASP A 175 1 O ALA A 171 N GLY A 130 SHEET 4 E 5 GLN A 108 LYS A 113 -1 N LEU A 111 O VAL A 172 SHEET 5 E 5 LEU A 191 ILE A 194 -1 O ILE A 194 N ILE A 110 CISPEP 1 LYS A 20 LYS A 21 0 -15.04 CISPEP 2 ALA A 32 PRO A 33 0 9.59 SITE 1 AC1 3 LYS A 21 LYS A 245 ARG A 248 SITE 1 AC2 5 GLU A 105 TYR A 232 TYR A 236 LYS A 245 SITE 2 AC2 5 ARG A 248 SITE 1 AC3 7 THR A 90 ASP A 91 GLU A 92 GLU A 139 SITE 2 AC3 7 HOH A 331 HOH A 348 HOH A 449 SITE 1 AC4 14 ASP A 28 PHE A 31 TRP A 68 SER A 85 SITE 2 AC4 14 GLY A 86 ILE A 87 THR A 88 ARG A 93 SITE 3 AC4 14 GLN A 132 THR A 135 THR A 136 ASP A 175 SITE 4 AC4 14 TYR A 205 HOH A 304 CRYST1 68.268 73.887 102.681 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014648 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009739 0.00000