HEADER UNKNOWN FUNCTION 10-MAY-07 2PVZ TITLE CRYSTAL STRUCTURE OF METHYLACONITATE ISOMERASE PRPF FROM SHEWANELLA TITLE 2 ONEIDENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRPF METHYLACONITATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 70863; SOURCE 4 GENE: PRPF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPRP196 KEYWDS PROPIONATE CATABOLISM, DIAMINOPIMELATE EPIMERASE LIKE, ACONITATE KEYWDS 2 BINDING, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR G.S.GARVEY,I.R.RAYMENT REVDAT 4 13-JUL-11 2PVZ 1 VERSN REVDAT 3 24-FEB-09 2PVZ 1 VERSN REVDAT 2 30-OCT-07 2PVZ 1 JRNL REVDAT 1 21-AUG-07 2PVZ 0 JRNL AUTH G.S.GARVEY,C.J.ROCCO,J.C.ESCALANTE-SEMERENA,I.RAYMENT JRNL TITL THE THREE-DIMENSIONAL CRYSTAL STRUCTURE OF THE PRPF PROTEIN JRNL TITL 2 OF SHEWANELLA ONEIDENSIS COMPLEXED WITH TRANS-ACONITATE: JRNL TITL 3 INSIGHTS INTO ITS BIOLOGICAL FUNCTION. JRNL REF PROTEIN SCI. V. 16 1274 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17567742 JRNL DOI 10.1110/PS.072801907 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 53215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2850 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3643 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.1620 REMARK 3 BIN FREE R VALUE SET COUNT : 216 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5649 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 849 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.669 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5868 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8003 ; 1.073 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 804 ; 5.361 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 221 ;35.272 ;23.937 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 906 ;11.853 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;14.276 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 933 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4458 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2792 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4014 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 735 ; 0.124 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3986 ; 0.433 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6232 ; 0.717 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2084 ; 1.109 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1754 ; 1.775 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB042834. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.964108 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 204015 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 75.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.07400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 300-350 MM NACL, 21-24% METHYL ETHER REMARK 280 POLY(ETHYLENE GLYCOL) 5000, BUFFERED WITH 100 MM TRIETHANOLAMINE REMARK 280 (PH 8.0 AT 25 C). , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.02900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMODIMER. THERE IS ONE REMARK 300 HOMODIMER IN THE ASYMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 LYS A 4 REMARK 465 ASP A 188 REMARK 465 ASP A 189 REMARK 465 GLY A 190 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 GLY A 193 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 LYS B 4 REMARK 465 ASP B 188 REMARK 465 ASP B 189 REMARK 465 GLY B 190 REMARK 465 GLU B 191 REMARK 465 GLY B 192 REMARK 465 GLY B 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 98 CE NZ REMARK 470 LEU A 167 CG CD1 CD2 REMARK 470 ASP A 187 CG OD1 OD2 REMARK 470 CYS A 194 SG REMARK 470 GLU A 206 CG CD OE1 OE2 REMARK 470 ARG A 212 NE CZ NH1 NH2 REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 GLU A 369 CD OE1 OE2 REMARK 470 ASN A 370 CG OD1 REMARK 470 GLU A 372 CG CD OE1 OE2 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 LYS B 98 CE NZ REMARK 470 LEU B 167 CG CD1 CD2 REMARK 470 ASP B 187 CG OD1 OD2 REMARK 470 GLU B 206 OE1 OE2 REMARK 470 ARG B 212 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 219 OD1 REMARK 470 LYS B 268 CD CE NZ REMARK 470 LYS B 297 CE NZ REMARK 470 GLN B 365 CB CG CD OE1 NE2 REMARK 470 GLU B 369 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 EDO A 1011 O HOH A 1123 1.87 REMARK 500 O HOH A 1368 O HOH A 1398 2.02 REMARK 500 O HOH A 1118 O HOH A 1371 2.09 REMARK 500 O HOH A 1216 O HOH A 1376 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 62 40.89 -107.53 REMARK 500 ASN A 183 60.91 38.97 REMARK 500 ILE A 243 -37.32 -131.08 REMARK 500 ALA A 319 -113.08 -142.49 REMARK 500 ALA A 364 80.78 -163.37 REMARK 500 ASP B 125 118.01 -39.43 REMARK 500 ARG B 276 78.11 -109.15 REMARK 500 ALA B 319 -108.18 -142.59 REMARK 500 ARG B 382 -166.93 -127.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1133 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A1242 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH A1246 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A1280 DISTANCE = 5.32 ANGSTROMS REMARK 525 HOH A1286 DISTANCE = 5.40 ANGSTROMS REMARK 525 HOH A1342 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A1359 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH A1387 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH B 499 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH B 595 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH B 616 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH B 648 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH B 756 DISTANCE = 5.13 ANGSTROMS REMARK 525 HOH B 758 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B 788 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 826 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH B 830 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 844 DISTANCE = 5.34 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1030 O REMARK 620 2 GLN A 240 NE2 154.3 REMARK 620 3 HOH A1183 O 78.2 96.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 658 O REMARK 620 2 HOH B 671 O 119.6 REMARK 620 3 HOH B 405 O 123.1 76.0 REMARK 620 4 LYS A 59 NZ 79.4 158.3 103.4 REMARK 620 5 GLN B 240 NE2 82.0 96.6 154.5 74.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 69 OG REMARK 620 2 LYS A 73 NZ 119.1 REMARK 620 3 SER A 312 OG 68.0 119.9 REMARK 620 4 HOH A1251 O 128.9 74.9 63.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 30 N REMARK 620 2 GLN A 30 NE2 92.5 REMARK 620 3 HOH A1186 O 75.9 89.2 REMARK 620 4 HOH A1364 O 154.8 80.2 79.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1011 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PW0 RELATED DB: PDB DBREF 2PVZ A 1 397 UNP Q8EJW4 Q8EJW4_SHEON 1 397 DBREF 2PVZ B 1 397 UNP Q8EJW4 Q8EJW4_SHEON 1 397 SEQADV 2PVZ CSD A 107 UNP Q8EJW4 CYS 107 MODIFIED RESIDUE SEQADV 2PVZ CSD B 107 UNP Q8EJW4 CYS 107 MODIFIED RESIDUE SEQRES 1 A 397 MET SER ASN LYS LEU PHE PRO PRO GLN ILE LYS VAL ALA SEQRES 2 A 397 ALA THR TYR MET ARG GLY GLY THR SER LYS GLY VAL PHE SEQRES 3 A 397 PHE ARG LEU GLN ASP LEU PRO GLU ALA ALA GLN VAL PRO SEQRES 4 A 397 GLY PRO ALA ARG ASP ALA LEU LEU LEU ARG VAL ILE GLY SEQRES 5 A 397 SER PRO ASP PRO TYR ALA LYS GLN ILE ASP GLY MET GLY SEQRES 6 A 397 GLY ALA THR SER SER THR SER LYS THR VAL ILE LEU SER SEQRES 7 A 397 HIS SER SER LYS ALA ASN HIS ASP VAL ASP TYR LEU PHE SEQRES 8 A 397 GLY GLN VAL SER ILE ASP LYS PRO PHE VAL ASP TRP SER SEQRES 9 A 397 GLY ASN CSD GLY ASN LEU THR ALA ALA VAL GLY ALA PHE SEQRES 10 A 397 ALA ILE SER ASN GLY LEU ILE ASP ALA ALA ARG ILE PRO SEQRES 11 A 397 ARG ASN GLY VAL CYS THR VAL ARG ILE TRP GLN ALA ASN SEQRES 12 A 397 ILE GLY LYS THR ILE ILE ALA HIS VAL PRO ILE THR ASP SEQRES 13 A 397 GLY ALA VAL GLN GLU THR GLY ASP PHE GLU LEU ASP GLY SEQRES 14 A 397 VAL THR PHE PRO ALA ALA GLU VAL GLN ILE GLU PHE MET SEQRES 15 A 397 ASN PRO ALA ALA ASP ASP ASP GLY GLU GLY GLY CYS MET SEQRES 16 A 397 PHE PRO THR GLY ASN LEU VAL ASP VAL LEU GLU VAL PRO SEQRES 17 A 397 GLY ILE GLY ARG PHE ASN ALA THR MET ILE ASN ALA GLY SEQRES 18 A 397 ILE PRO THR ILE PHE ILE ASN ALA GLU ASP LEU GLY TYR SEQRES 19 A 397 THR GLY THR GLU LEU GLN ASP ASP ILE ASN SER ASP ASN SEQRES 20 A 397 ALA ALA LEU ALA LYS PHE GLU THR ILE ARG ALA HIS GLY SEQRES 21 A 397 ALA LEU ARG MET GLY LEU ILE LYS HIS ILE ASP GLU ALA SEQRES 22 A 397 ALA SER ARG GLN HIS THR PRO LYS ILE ALA PHE VAL ALA SEQRES 23 A 397 PRO PRO LYS SER TYR ALA SER SER SER GLY LYS THR VAL SEQRES 24 A 397 ALA ALA GLU ASP VAL ASP LEU LEU VAL ARG ALA LEU SER SEQRES 25 A 397 MET GLY LYS LEU HIS HIS ALA MET MET GLY THR ALA ALA SEQRES 26 A 397 VAL ALA ILE GLY THR ALA ALA ALA ILE PRO GLY THR LEU SEQRES 27 A 397 VAL ASN LEU ALA ALA GLY GLY GLY GLU LYS GLU ALA VAL SEQRES 28 A 397 ARG PHE GLY HIS PRO SER GLY THR LEU ARG VAL GLY ALA SEQRES 29 A 397 GLN ALA VAL GLN GLU ASN GLY GLU TRP THR VAL ILE LYS SEQRES 30 A 397 ALA ILE MET SER ARG SER ALA ARG VAL LEU MET GLU GLY SEQRES 31 A 397 PHE VAL ARG VAL PRO LYS PRO SEQRES 1 B 397 MET SER ASN LYS LEU PHE PRO PRO GLN ILE LYS VAL ALA SEQRES 2 B 397 ALA THR TYR MET ARG GLY GLY THR SER LYS GLY VAL PHE SEQRES 3 B 397 PHE ARG LEU GLN ASP LEU PRO GLU ALA ALA GLN VAL PRO SEQRES 4 B 397 GLY PRO ALA ARG ASP ALA LEU LEU LEU ARG VAL ILE GLY SEQRES 5 B 397 SER PRO ASP PRO TYR ALA LYS GLN ILE ASP GLY MET GLY SEQRES 6 B 397 GLY ALA THR SER SER THR SER LYS THR VAL ILE LEU SER SEQRES 7 B 397 HIS SER SER LYS ALA ASN HIS ASP VAL ASP TYR LEU PHE SEQRES 8 B 397 GLY GLN VAL SER ILE ASP LYS PRO PHE VAL ASP TRP SER SEQRES 9 B 397 GLY ASN CSD GLY ASN LEU THR ALA ALA VAL GLY ALA PHE SEQRES 10 B 397 ALA ILE SER ASN GLY LEU ILE ASP ALA ALA ARG ILE PRO SEQRES 11 B 397 ARG ASN GLY VAL CYS THR VAL ARG ILE TRP GLN ALA ASN SEQRES 12 B 397 ILE GLY LYS THR ILE ILE ALA HIS VAL PRO ILE THR ASP SEQRES 13 B 397 GLY ALA VAL GLN GLU THR GLY ASP PHE GLU LEU ASP GLY SEQRES 14 B 397 VAL THR PHE PRO ALA ALA GLU VAL GLN ILE GLU PHE MET SEQRES 15 B 397 ASN PRO ALA ALA ASP ASP ASP GLY GLU GLY GLY CYS MET SEQRES 16 B 397 PHE PRO THR GLY ASN LEU VAL ASP VAL LEU GLU VAL PRO SEQRES 17 B 397 GLY ILE GLY ARG PHE ASN ALA THR MET ILE ASN ALA GLY SEQRES 18 B 397 ILE PRO THR ILE PHE ILE ASN ALA GLU ASP LEU GLY TYR SEQRES 19 B 397 THR GLY THR GLU LEU GLN ASP ASP ILE ASN SER ASP ASN SEQRES 20 B 397 ALA ALA LEU ALA LYS PHE GLU THR ILE ARG ALA HIS GLY SEQRES 21 B 397 ALA LEU ARG MET GLY LEU ILE LYS HIS ILE ASP GLU ALA SEQRES 22 B 397 ALA SER ARG GLN HIS THR PRO LYS ILE ALA PHE VAL ALA SEQRES 23 B 397 PRO PRO LYS SER TYR ALA SER SER SER GLY LYS THR VAL SEQRES 24 B 397 ALA ALA GLU ASP VAL ASP LEU LEU VAL ARG ALA LEU SER SEQRES 25 B 397 MET GLY LYS LEU HIS HIS ALA MET MET GLY THR ALA ALA SEQRES 26 B 397 VAL ALA ILE GLY THR ALA ALA ALA ILE PRO GLY THR LEU SEQRES 27 B 397 VAL ASN LEU ALA ALA GLY GLY GLY GLU LYS GLU ALA VAL SEQRES 28 B 397 ARG PHE GLY HIS PRO SER GLY THR LEU ARG VAL GLY ALA SEQRES 29 B 397 GLN ALA VAL GLN GLU ASN GLY GLU TRP THR VAL ILE LYS SEQRES 30 B 397 ALA ILE MET SER ARG SER ALA ARG VAL LEU MET GLU GLY SEQRES 31 B 397 PHE VAL ARG VAL PRO LYS PRO MODRES 2PVZ CSD A 107 CYS 3-SULFINOALANINE MODRES 2PVZ CSD B 107 CYS 3-SULFINOALANINE HET CSD A 107 8 HET CSD B 107 8 HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HET EDO A1005 4 HET EDO A1007 4 HET EDO A1010 4 HET EDO A1011 4 HETNAM CSD 3-SULFINOALANINE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CSD 2(C3 H7 N O4 S) FORMUL 3 CA 4(CA 2+) FORMUL 7 EDO 4(C2 H6 O2) FORMUL 11 HOH *849(H2 O) HELIX 1 1 GLN A 30 LEU A 32 5 3 HELIX 2 2 PRO A 33 VAL A 38 5 6 HELIX 3 3 GLY A 40 GLY A 52 1 13 HELIX 4 4 THR A 68 THR A 71 5 4 HELIX 5 5 LEU A 110 ASN A 121 1 12 HELIX 6 6 ASP A 125 ILE A 129 5 5 HELIX 7 7 GLU A 230 GLY A 233 5 4 HELIX 8 8 LEU A 239 ILE A 243 5 5 HELIX 9 9 ASP A 246 MET A 264 1 19 HELIX 10 10 HIS A 269 ARG A 276 5 8 HELIX 11 11 ALA A 300 VAL A 304 5 5 HELIX 12 12 MET A 321 ILE A 334 1 14 HELIX 13 13 THR A 337 ALA A 343 1 7 HELIX 14 14 GLN B 30 LEU B 32 5 3 HELIX 15 15 PRO B 33 VAL B 38 5 6 HELIX 16 16 GLY B 40 GLY B 52 1 13 HELIX 17 17 THR B 68 THR B 71 5 4 HELIX 18 18 LEU B 110 ASN B 121 1 12 HELIX 19 19 ASP B 125 ILE B 129 5 5 HELIX 20 20 GLU B 230 GLY B 233 5 4 HELIX 21 21 LEU B 239 ASN B 244 1 6 HELIX 22 22 ASP B 246 MET B 264 1 19 HELIX 23 23 HIS B 269 SER B 275 5 7 HELIX 24 24 ALA B 300 VAL B 304 5 5 HELIX 25 25 MET B 321 ALA B 333 1 13 HELIX 26 26 THR B 337 ALA B 343 1 7 SHEET 1 A 4 LYS A 377 ARG A 382 0 SHEET 2 A 4 VAL A 177 MET A 182 -1 N PHE A 181 O ALA A 378 SHEET 3 A 4 LYS A 146 THR A 155 -1 N ILE A 149 O GLU A 180 SHEET 4 A 4 ALA A 158 VAL A 159 -1 O ALA A 158 N THR A 155 SHEET 1 B 5 ALA A 158 VAL A 159 0 SHEET 2 B 5 LYS A 146 THR A 155 -1 N THR A 155 O ALA A 158 SHEET 3 B 5 GLY A 133 GLN A 141 -1 N CYS A 135 O VAL A 152 SHEET 4 B 5 VAL A 87 VAL A 94 1 N TYR A 89 O TRP A 140 SHEET 5 B 5 VAL A 101 ASP A 102 -1 O ASP A 102 N GLN A 93 SHEET 1 C12 VAL A 101 ASP A 102 0 SHEET 2 C12 VAL A 87 VAL A 94 -1 N GLN A 93 O ASP A 102 SHEET 3 C12 LYS A 73 HIS A 79 -1 N SER A 78 O ASP A 88 SHEET 4 C12 SER A 22 ARG A 28 1 N PHE A 27 O LEU A 77 SHEET 5 C12 ILE A 10 GLY A 19 -1 N THR A 15 O PHE A 26 SHEET 6 C12 ALA A 384 VAL A 394 -1 O MET A 388 N TYR A 16 SHEET 7 C12 ALA B 384 VAL B 394 -1 O PHE B 391 N GLU A 389 SHEET 8 C12 ILE B 10 GLY B 19 -1 N TYR B 16 O MET B 388 SHEET 9 C12 SER B 22 ARG B 28 -1 O PHE B 26 N THR B 15 SHEET 10 C12 LYS B 73 HIS B 79 1 O LEU B 77 N PHE B 27 SHEET 11 C12 VAL B 87 VAL B 94 -1 O ASP B 88 N SER B 78 SHEET 12 C12 VAL B 101 ASP B 102 -1 O ASP B 102 N GLN B 93 SHEET 1 D 5 VAL B 101 ASP B 102 0 SHEET 2 D 5 VAL B 87 VAL B 94 -1 N GLN B 93 O ASP B 102 SHEET 3 D 5 GLY B 133 GLN B 141 1 O TRP B 140 N VAL B 87 SHEET 4 D 5 LYS B 146 THR B 155 -1 O VAL B 152 N CYS B 135 SHEET 5 D 5 ALA B 158 VAL B 159 -1 O ALA B 158 N THR B 155 SHEET 1 E 8 ALA B 158 VAL B 159 0 SHEET 2 E 8 LYS B 146 THR B 155 -1 N THR B 155 O ALA B 158 SHEET 3 E 8 VAL B 177 MET B 182 -1 O GLU B 180 N ILE B 149 SHEET 4 E 8 GLU B 372 ARG B 382 -1 O ALA B 378 N PHE B 181 SHEET 5 E 8 GLY B 358 GLU B 369 -1 N GLY B 363 O ILE B 379 SHEET 6 E 8 ALA B 350 HIS B 355 -1 N HIS B 355 O GLY B 358 SHEET 7 E 8 LEU B 306 SER B 312 1 N VAL B 308 O GLY B 354 SHEET 8 E 8 LYS B 315 LEU B 316 -1 O LYS B 315 N SER B 312 SHEET 1 F 6 LYS B 315 LEU B 316 0 SHEET 2 F 6 LEU B 306 SER B 312 -1 N SER B 312 O LYS B 315 SHEET 3 F 6 LYS B 281 ALA B 286 -1 N PHE B 284 O ARG B 309 SHEET 4 F 6 PRO B 223 ASN B 228 1 N PRO B 223 O LYS B 281 SHEET 5 F 6 GLY B 211 ASN B 219 -1 N THR B 216 O PHE B 226 SHEET 6 F 6 ASP B 203 VAL B 207 -1 N LEU B 205 O PHE B 213 SHEET 1 G 6 ASP A 203 VAL A 207 0 SHEET 2 G 6 GLY A 211 ASN A 219 -1 O PHE A 213 N LEU A 205 SHEET 3 G 6 PRO A 223 ASN A 228 -1 O PHE A 226 N THR A 216 SHEET 4 G 6 LYS A 281 ALA A 286 1 O LYS A 281 N PRO A 223 SHEET 5 G 6 LEU A 306 SER A 312 -1 O ARG A 309 N PHE A 284 SHEET 6 G 6 LYS A 315 LEU A 316 -1 O LYS A 315 N SER A 312 SHEET 1 H 7 ASP A 203 VAL A 207 0 SHEET 2 H 7 GLY A 211 ASN A 219 -1 O PHE A 213 N LEU A 205 SHEET 3 H 7 PRO A 223 ASN A 228 -1 O PHE A 226 N THR A 216 SHEET 4 H 7 LYS A 281 ALA A 286 1 O LYS A 281 N PRO A 223 SHEET 5 H 7 LEU A 306 SER A 312 -1 O ARG A 309 N PHE A 284 SHEET 6 H 7 ALA A 350 HIS A 355 1 O GLY A 354 N VAL A 308 SHEET 7 H 7 GLY A 358 GLY A 363 -1 O GLY A 358 N HIS A 355 SHEET 1 I 2 TYR A 291 ALA A 292 0 SHEET 2 I 2 THR A 298 VAL A 299 -1 O VAL A 299 N TYR A 291 SHEET 1 J 2 ALA A 366 GLU A 369 0 SHEET 2 J 2 GLU A 372 VAL A 375 -1 O GLU A 372 N GLU A 369 SHEET 1 K 2 TYR B 291 ALA B 292 0 SHEET 2 K 2 THR B 298 VAL B 299 -1 O VAL B 299 N TYR B 291 LINK C ASN A 106 N CSD A 107 1555 1555 1.33 LINK C CSD A 107 N GLY A 108 1555 1555 1.33 LINK CA CA A1001 O HOH A1030 1555 1555 3.13 LINK CA CA A1001 NE2 GLN A 240 1555 1555 3.34 LINK CA CA A1001 O HOH A1183 1555 1555 3.21 LINK CA CA A1002 O HOH B 658 1555 1555 3.13 LINK CA CA A1002 O HOH B 671 1555 1555 3.22 LINK CA CA A1002 O HOH B 405 1555 1555 3.23 LINK CA CA A1002 NZ LYS A 59 1555 1555 3.36 LINK CA CA A1002 NE2 GLN B 240 1555 1555 3.25 LINK CA CA A1003 OG SER A 69 1555 1555 3.30 LINK CA CA A1003 NZ LYS A 73 1555 1555 3.26 LINK CA CA A1003 OG SER A 312 1555 1555 3.20 LINK CA CA A1003 O HOH A1251 1555 1555 3.35 LINK CA CA A1004 N GLN A 30 1555 1555 3.31 LINK CA CA A1004 NE2 GLN A 30 1555 1555 3.19 LINK CA CA A1004 O HOH A1186 1555 1555 3.04 LINK CA CA A1004 O HOH A1364 1555 1555 3.08 LINK C ASN B 106 N CSD B 107 1555 1555 1.33 LINK C CSD B 107 N GLY B 108 1555 1555 1.33 CISPEP 1 SER A 53 PRO A 54 0 -6.55 CISPEP 2 THR A 279 PRO A 280 0 -3.69 CISPEP 3 SER B 53 PRO B 54 0 -6.22 CISPEP 4 THR B 279 PRO B 280 0 -3.93 SITE 1 AC1 2 GLN A 240 LYS B 59 SITE 1 AC2 2 LYS A 59 GLN B 240 SITE 1 AC3 4 SER A 69 LYS A 73 SER A 312 HIS A 317 SITE 1 AC4 4 LEU A 29 GLN A 30 HOH A1186 HOH A1364 SITE 1 AC5 7 SER A 22 CSD A 107 GLY A 108 ASN A 109 SITE 2 AC5 7 MET A 321 GLY A 322 THR A 323 SITE 1 AC6 8 ALA A 13 ALA A 14 THR A 15 PHE A 117 SITE 2 AC6 8 ASN A 121 HOH A1081 HOH A1090 HOH A1360 SITE 1 AC7 4 PRO A 184 ASN A 219 GLY A 221 HOH A1085 SITE 1 AC8 11 LEU A 250 PHE A 253 GLU A 254 ARG A 257 SITE 2 AC8 11 ILE A 282 LEU A 311 MET A 313 GLY A 314 SITE 3 AC8 11 HOH A1111 HOH A1113 HOH A1123 CRYST1 51.868 104.058 78.254 90.00 104.37 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019280 0.000000 0.004941 0.00000 SCALE2 0.000000 0.009610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013192 0.00000