HEADER UNKNOWN FUNCTION 10-MAY-07 2PVZ TITLE CRYSTAL STRUCTURE OF METHYLACONITATE ISOMERASE PRPF FROM SHEWANELLA TITLE 2 ONEIDENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRPF METHYLACONITATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 70863; SOURCE 4 GENE: PRPF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPRP196 KEYWDS PROPIONATE CATABOLISM, DIAMINOPIMELATE EPIMERASE LIKE, ACONITATE KEYWDS 2 BINDING, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR G.S.GARVEY,I.R.RAYMENT REVDAT 5 06-NOV-24 2PVZ 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2PVZ 1 VERSN REVDAT 3 24-FEB-09 2PVZ 1 VERSN REVDAT 2 30-OCT-07 2PVZ 1 JRNL REVDAT 1 21-AUG-07 2PVZ 0 JRNL AUTH G.S.GARVEY,C.J.ROCCO,J.C.ESCALANTE-SEMERENA,I.RAYMENT JRNL TITL THE THREE-DIMENSIONAL CRYSTAL STRUCTURE OF THE PRPF PROTEIN JRNL TITL 2 OF SHEWANELLA ONEIDENSIS COMPLEXED WITH TRANS-ACONITATE: JRNL TITL 3 INSIGHTS INTO ITS BIOLOGICAL FUNCTION. JRNL REF PROTEIN SCI. V. 16 1274 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17567742 JRNL DOI 10.1110/PS.072801907 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 53215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2850 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3643 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.1620 REMARK 3 BIN FREE R VALUE SET COUNT : 216 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5649 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 849 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.669 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5868 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8003 ; 1.073 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 804 ; 5.361 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 221 ;35.272 ;23.937 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 906 ;11.853 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;14.276 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 933 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4458 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2792 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4014 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 735 ; 0.124 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3986 ; 0.433 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6232 ; 0.717 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2084 ; 1.109 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1754 ; 1.775 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000042834. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.964108 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 204015 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 75.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.07400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 300-350 MM NACL, 21-24% METHYL ETHER REMARK 280 POLY(ETHYLENE GLYCOL) 5000, BUFFERED WITH 100 MM TRIETHANOLAMINE REMARK 280 (PH 8.0 AT 25 C). , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.02900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMODIMER. THERE IS ONE REMARK 300 HOMODIMER IN THE ASYMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 LYS A 4 REMARK 465 ASP A 188 REMARK 465 ASP A 189 REMARK 465 GLY A 190 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 GLY A 193 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 LYS B 4 REMARK 465 ASP B 188 REMARK 465 ASP B 189 REMARK 465 GLY B 190 REMARK 465 GLU B 191 REMARK 465 GLY B 192 REMARK 465 GLY B 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 98 CE NZ REMARK 470 LEU A 167 CG CD1 CD2 REMARK 470 ASP A 187 CG OD1 OD2 REMARK 470 CYS A 194 SG REMARK 470 GLU A 206 CG CD OE1 OE2 REMARK 470 ARG A 212 NE CZ NH1 NH2 REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 GLU A 369 CD OE1 OE2 REMARK 470 ASN A 370 CG OD1 ND2 REMARK 470 GLU A 372 CG CD OE1 OE2 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 LYS B 98 CE NZ REMARK 470 LEU B 167 CG CD1 CD2 REMARK 470 ASP B 187 CG OD1 OD2 REMARK 470 GLU B 206 OE1 OE2 REMARK 470 ARG B 212 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 219 OD1 ND2 REMARK 470 LYS B 268 CD CE NZ REMARK 470 LYS B 297 CE NZ REMARK 470 GLN B 365 CB CG CD OE1 NE2 REMARK 470 GLU B 369 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 EDO A 1011 O HOH A 1123 1.87 REMARK 500 O HOH A 1368 O HOH A 1398 2.02 REMARK 500 O HOH A 1118 O HOH A 1371 2.09 REMARK 500 O HOH A 1216 O HOH A 1376 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 62 40.89 -107.53 REMARK 500 ASN A 183 60.91 38.97 REMARK 500 ASN A 183 61.69 38.00 REMARK 500 ILE A 243 -37.32 -131.08 REMARK 500 ALA A 319 -113.08 -142.49 REMARK 500 ALA A 364 80.78 -163.37 REMARK 500 ASP B 125 118.01 -39.43 REMARK 500 ARG B 276 78.11 -109.15 REMARK 500 ALA B 319 -108.18 -142.59 REMARK 500 ARG B 382 -166.93 -127.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 30 N REMARK 620 2 GLN A 30 NE2 92.5 REMARK 620 3 HOH A1186 O 75.9 89.2 REMARK 620 4 HOH A1364 O 154.8 80.2 79.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 59 NZ REMARK 620 2 GLN B 240 NE2 74.5 REMARK 620 3 HOH B 405 O 103.4 154.5 REMARK 620 4 HOH B 658 O 79.4 82.0 123.1 REMARK 620 5 HOH B 671 O 158.3 96.6 76.0 119.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 69 OG REMARK 620 2 LYS A 73 NZ 119.1 REMARK 620 3 SER A 312 OG 68.0 119.9 REMARK 620 4 HOH A1251 O 128.9 74.9 63.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 240 NE2 REMARK 620 2 HOH A1030 O 154.3 REMARK 620 3 HOH A1183 O 96.7 78.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1011 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PW0 RELATED DB: PDB DBREF 2PVZ A 1 397 UNP Q8EJW4 Q8EJW4_SHEON 1 397 DBREF 2PVZ B 1 397 UNP Q8EJW4 Q8EJW4_SHEON 1 397 SEQADV 2PVZ CSD A 107 UNP Q8EJW4 CYS 107 MODIFIED RESIDUE SEQADV 2PVZ CSD B 107 UNP Q8EJW4 CYS 107 MODIFIED RESIDUE SEQRES 1 A 397 MET SER ASN LYS LEU PHE PRO PRO GLN ILE LYS VAL ALA SEQRES 2 A 397 ALA THR TYR MET ARG GLY GLY THR SER LYS GLY VAL PHE SEQRES 3 A 397 PHE ARG LEU GLN ASP LEU PRO GLU ALA ALA GLN VAL PRO SEQRES 4 A 397 GLY PRO ALA ARG ASP ALA LEU LEU LEU ARG VAL ILE GLY SEQRES 5 A 397 SER PRO ASP PRO TYR ALA LYS GLN ILE ASP GLY MET GLY SEQRES 6 A 397 GLY ALA THR SER SER THR SER LYS THR VAL ILE LEU SER SEQRES 7 A 397 HIS SER SER LYS ALA ASN HIS ASP VAL ASP TYR LEU PHE SEQRES 8 A 397 GLY GLN VAL SER ILE ASP LYS PRO PHE VAL ASP TRP SER SEQRES 9 A 397 GLY ASN CSD GLY ASN LEU THR ALA ALA VAL GLY ALA PHE SEQRES 10 A 397 ALA ILE SER ASN GLY LEU ILE ASP ALA ALA ARG ILE PRO SEQRES 11 A 397 ARG ASN GLY VAL CYS THR VAL ARG ILE TRP GLN ALA ASN SEQRES 12 A 397 ILE GLY LYS THR ILE ILE ALA HIS VAL PRO ILE THR ASP SEQRES 13 A 397 GLY ALA VAL GLN GLU THR GLY ASP PHE GLU LEU ASP GLY SEQRES 14 A 397 VAL THR PHE PRO ALA ALA GLU VAL GLN ILE GLU PHE MET SEQRES 15 A 397 ASN PRO ALA ALA ASP ASP ASP GLY GLU GLY GLY CYS MET SEQRES 16 A 397 PHE PRO THR GLY ASN LEU VAL ASP VAL LEU GLU VAL PRO SEQRES 17 A 397 GLY ILE GLY ARG PHE ASN ALA THR MET ILE ASN ALA GLY SEQRES 18 A 397 ILE PRO THR ILE PHE ILE ASN ALA GLU ASP LEU GLY TYR SEQRES 19 A 397 THR GLY THR GLU LEU GLN ASP ASP ILE ASN SER ASP ASN SEQRES 20 A 397 ALA ALA LEU ALA LYS PHE GLU THR ILE ARG ALA HIS GLY SEQRES 21 A 397 ALA LEU ARG MET GLY LEU ILE LYS HIS ILE ASP GLU ALA SEQRES 22 A 397 ALA SER ARG GLN HIS THR PRO LYS ILE ALA PHE VAL ALA SEQRES 23 A 397 PRO PRO LYS SER TYR ALA SER SER SER GLY LYS THR VAL SEQRES 24 A 397 ALA ALA GLU ASP VAL ASP LEU LEU VAL ARG ALA LEU SER SEQRES 25 A 397 MET GLY LYS LEU HIS HIS ALA MET MET GLY THR ALA ALA SEQRES 26 A 397 VAL ALA ILE GLY THR ALA ALA ALA ILE PRO GLY THR LEU SEQRES 27 A 397 VAL ASN LEU ALA ALA GLY GLY GLY GLU LYS GLU ALA VAL SEQRES 28 A 397 ARG PHE GLY HIS PRO SER GLY THR LEU ARG VAL GLY ALA SEQRES 29 A 397 GLN ALA VAL GLN GLU ASN GLY GLU TRP THR VAL ILE LYS SEQRES 30 A 397 ALA ILE MET SER ARG SER ALA ARG VAL LEU MET GLU GLY SEQRES 31 A 397 PHE VAL ARG VAL PRO LYS PRO SEQRES 1 B 397 MET SER ASN LYS LEU PHE PRO PRO GLN ILE LYS VAL ALA SEQRES 2 B 397 ALA THR TYR MET ARG GLY GLY THR SER LYS GLY VAL PHE SEQRES 3 B 397 PHE ARG LEU GLN ASP LEU PRO GLU ALA ALA GLN VAL PRO SEQRES 4 B 397 GLY PRO ALA ARG ASP ALA LEU LEU LEU ARG VAL ILE GLY SEQRES 5 B 397 SER PRO ASP PRO TYR ALA LYS GLN ILE ASP GLY MET GLY SEQRES 6 B 397 GLY ALA THR SER SER THR SER LYS THR VAL ILE LEU SER SEQRES 7 B 397 HIS SER SER LYS ALA ASN HIS ASP VAL ASP TYR LEU PHE SEQRES 8 B 397 GLY GLN VAL SER ILE ASP LYS PRO PHE VAL ASP TRP SER SEQRES 9 B 397 GLY ASN CSD GLY ASN LEU THR ALA ALA VAL GLY ALA PHE SEQRES 10 B 397 ALA ILE SER ASN GLY LEU ILE ASP ALA ALA ARG ILE PRO SEQRES 11 B 397 ARG ASN GLY VAL CYS THR VAL ARG ILE TRP GLN ALA ASN SEQRES 12 B 397 ILE GLY LYS THR ILE ILE ALA HIS VAL PRO ILE THR ASP SEQRES 13 B 397 GLY ALA VAL GLN GLU THR GLY ASP PHE GLU LEU ASP GLY SEQRES 14 B 397 VAL THR PHE PRO ALA ALA GLU VAL GLN ILE GLU PHE MET SEQRES 15 B 397 ASN PRO ALA ALA ASP ASP ASP GLY GLU GLY GLY CYS MET SEQRES 16 B 397 PHE PRO THR GLY ASN LEU VAL ASP VAL LEU GLU VAL PRO SEQRES 17 B 397 GLY ILE GLY ARG PHE ASN ALA THR MET ILE ASN ALA GLY SEQRES 18 B 397 ILE PRO THR ILE PHE ILE ASN ALA GLU ASP LEU GLY TYR SEQRES 19 B 397 THR GLY THR GLU LEU GLN ASP ASP ILE ASN SER ASP ASN SEQRES 20 B 397 ALA ALA LEU ALA LYS PHE GLU THR ILE ARG ALA HIS GLY SEQRES 21 B 397 ALA LEU ARG MET GLY LEU ILE LYS HIS ILE ASP GLU ALA SEQRES 22 B 397 ALA SER ARG GLN HIS THR PRO LYS ILE ALA PHE VAL ALA SEQRES 23 B 397 PRO PRO LYS SER TYR ALA SER SER SER GLY LYS THR VAL SEQRES 24 B 397 ALA ALA GLU ASP VAL ASP LEU LEU VAL ARG ALA LEU SER SEQRES 25 B 397 MET GLY LYS LEU HIS HIS ALA MET MET GLY THR ALA ALA SEQRES 26 B 397 VAL ALA ILE GLY THR ALA ALA ALA ILE PRO GLY THR LEU SEQRES 27 B 397 VAL ASN LEU ALA ALA GLY GLY GLY GLU LYS GLU ALA VAL SEQRES 28 B 397 ARG PHE GLY HIS PRO SER GLY THR LEU ARG VAL GLY ALA SEQRES 29 B 397 GLN ALA VAL GLN GLU ASN GLY GLU TRP THR VAL ILE LYS SEQRES 30 B 397 ALA ILE MET SER ARG SER ALA ARG VAL LEU MET GLU GLY SEQRES 31 B 397 PHE VAL ARG VAL PRO LYS PRO MODRES 2PVZ CSD A 107 CYS 3-SULFINOALANINE MODRES 2PVZ CSD B 107 CYS 3-SULFINOALANINE HET CSD A 107 8 HET CSD B 107 8 HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HET EDO A1005 4 HET EDO A1007 4 HET EDO A1010 4 HET EDO A1011 4 HETNAM CSD 3-SULFINOALANINE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CSD 2(C3 H7 N O4 S) FORMUL 3 CA 4(CA 2+) FORMUL 7 EDO 4(C2 H6 O2) FORMUL 11 HOH *849(H2 O) HELIX 1 1 GLN A 30 LEU A 32 5 3 HELIX 2 2 PRO A 33 VAL A 38 5 6 HELIX 3 3 GLY A 40 GLY A 52 1 13 HELIX 4 4 THR A 68 THR A 71 5 4 HELIX 5 5 LEU A 110 ASN A 121 1 12 HELIX 6 6 ASP A 125 ILE A 129 5 5 HELIX 7 7 GLU A 230 GLY A 233 5 4 HELIX 8 8 LEU A 239 ILE A 243 5 5 HELIX 9 9 ASP A 246 MET A 264 1 19 HELIX 10 10 HIS A 269 ARG A 276 5 8 HELIX 11 11 ALA A 300 VAL A 304 5 5 HELIX 12 12 MET A 321 ILE A 334 1 14 HELIX 13 13 THR A 337 ALA A 343 1 7 HELIX 14 14 GLN B 30 LEU B 32 5 3 HELIX 15 15 PRO B 33 VAL B 38 5 6 HELIX 16 16 GLY B 40 GLY B 52 1 13 HELIX 17 17 THR B 68 THR B 71 5 4 HELIX 18 18 LEU B 110 ASN B 121 1 12 HELIX 19 19 ASP B 125 ILE B 129 5 5 HELIX 20 20 GLU B 230 GLY B 233 5 4 HELIX 21 21 LEU B 239 ASN B 244 1 6 HELIX 22 22 ASP B 246 MET B 264 1 19 HELIX 23 23 HIS B 269 SER B 275 5 7 HELIX 24 24 ALA B 300 VAL B 304 5 5 HELIX 25 25 MET B 321 ALA B 333 1 13 HELIX 26 26 THR B 337 ALA B 343 1 7 SHEET 1 A 4 LYS A 377 ARG A 382 0 SHEET 2 A 4 VAL A 177 MET A 182 -1 N PHE A 181 O ALA A 378 SHEET 3 A 4 LYS A 146 THR A 155 -1 N ILE A 149 O GLU A 180 SHEET 4 A 4 ALA A 158 VAL A 159 -1 O ALA A 158 N THR A 155 SHEET 1 B 5 ALA A 158 VAL A 159 0 SHEET 2 B 5 LYS A 146 THR A 155 -1 N THR A 155 O ALA A 158 SHEET 3 B 5 GLY A 133 GLN A 141 -1 N CYS A 135 O VAL A 152 SHEET 4 B 5 VAL A 87 VAL A 94 1 N TYR A 89 O TRP A 140 SHEET 5 B 5 VAL A 101 ASP A 102 -1 O ASP A 102 N GLN A 93 SHEET 1 C12 VAL A 101 ASP A 102 0 SHEET 2 C12 VAL A 87 VAL A 94 -1 N GLN A 93 O ASP A 102 SHEET 3 C12 LYS A 73 HIS A 79 -1 N SER A 78 O ASP A 88 SHEET 4 C12 SER A 22 ARG A 28 1 N PHE A 27 O LEU A 77 SHEET 5 C12 ILE A 10 GLY A 19 -1 N THR A 15 O PHE A 26 SHEET 6 C12 ALA A 384 VAL A 394 -1 O MET A 388 N TYR A 16 SHEET 7 C12 ALA B 384 VAL B 394 -1 O PHE B 391 N GLU A 389 SHEET 8 C12 ILE B 10 GLY B 19 -1 N TYR B 16 O MET B 388 SHEET 9 C12 SER B 22 ARG B 28 -1 O PHE B 26 N THR B 15 SHEET 10 C12 LYS B 73 HIS B 79 1 O LEU B 77 N PHE B 27 SHEET 11 C12 VAL B 87 VAL B 94 -1 O ASP B 88 N SER B 78 SHEET 12 C12 VAL B 101 ASP B 102 -1 O ASP B 102 N GLN B 93 SHEET 1 D 5 VAL B 101 ASP B 102 0 SHEET 2 D 5 VAL B 87 VAL B 94 -1 N GLN B 93 O ASP B 102 SHEET 3 D 5 GLY B 133 GLN B 141 1 O TRP B 140 N VAL B 87 SHEET 4 D 5 LYS B 146 THR B 155 -1 O VAL B 152 N CYS B 135 SHEET 5 D 5 ALA B 158 VAL B 159 -1 O ALA B 158 N THR B 155 SHEET 1 E 8 ALA B 158 VAL B 159 0 SHEET 2 E 8 LYS B 146 THR B 155 -1 N THR B 155 O ALA B 158 SHEET 3 E 8 VAL B 177 MET B 182 -1 O GLU B 180 N ILE B 149 SHEET 4 E 8 GLU B 372 ARG B 382 -1 O ALA B 378 N PHE B 181 SHEET 5 E 8 GLY B 358 GLU B 369 -1 N GLY B 363 O ILE B 379 SHEET 6 E 8 ALA B 350 HIS B 355 -1 N HIS B 355 O GLY B 358 SHEET 7 E 8 LEU B 306 SER B 312 1 N VAL B 308 O GLY B 354 SHEET 8 E 8 LYS B 315 LEU B 316 -1 O LYS B 315 N SER B 312 SHEET 1 F 6 LYS B 315 LEU B 316 0 SHEET 2 F 6 LEU B 306 SER B 312 -1 N SER B 312 O LYS B 315 SHEET 3 F 6 LYS B 281 ALA B 286 -1 N PHE B 284 O ARG B 309 SHEET 4 F 6 PRO B 223 ASN B 228 1 N PRO B 223 O LYS B 281 SHEET 5 F 6 GLY B 211 ASN B 219 -1 N THR B 216 O PHE B 226 SHEET 6 F 6 ASP B 203 VAL B 207 -1 N LEU B 205 O PHE B 213 SHEET 1 G 6 ASP A 203 VAL A 207 0 SHEET 2 G 6 GLY A 211 ASN A 219 -1 O PHE A 213 N LEU A 205 SHEET 3 G 6 PRO A 223 ASN A 228 -1 O PHE A 226 N THR A 216 SHEET 4 G 6 LYS A 281 ALA A 286 1 O LYS A 281 N PRO A 223 SHEET 5 G 6 LEU A 306 SER A 312 -1 O ARG A 309 N PHE A 284 SHEET 6 G 6 LYS A 315 LEU A 316 -1 O LYS A 315 N SER A 312 SHEET 1 H 7 ASP A 203 VAL A 207 0 SHEET 2 H 7 GLY A 211 ASN A 219 -1 O PHE A 213 N LEU A 205 SHEET 3 H 7 PRO A 223 ASN A 228 -1 O PHE A 226 N THR A 216 SHEET 4 H 7 LYS A 281 ALA A 286 1 O LYS A 281 N PRO A 223 SHEET 5 H 7 LEU A 306 SER A 312 -1 O ARG A 309 N PHE A 284 SHEET 6 H 7 ALA A 350 HIS A 355 1 O GLY A 354 N VAL A 308 SHEET 7 H 7 GLY A 358 GLY A 363 -1 O GLY A 358 N HIS A 355 SHEET 1 I 2 TYR A 291 ALA A 292 0 SHEET 2 I 2 THR A 298 VAL A 299 -1 O VAL A 299 N TYR A 291 SHEET 1 J 2 ALA A 366 GLU A 369 0 SHEET 2 J 2 GLU A 372 VAL A 375 -1 O GLU A 372 N GLU A 369 SHEET 1 K 2 TYR B 291 ALA B 292 0 SHEET 2 K 2 THR B 298 VAL B 299 -1 O VAL B 299 N TYR B 291 LINK C ASN A 106 N CSD A 107 1555 1555 1.33 LINK C CSD A 107 N GLY A 108 1555 1555 1.33 LINK C ASN B 106 N CSD B 107 1555 1555 1.33 LINK C CSD B 107 N GLY B 108 1555 1555 1.33 LINK N GLN A 30 CA CA A1004 1555 1555 3.31 LINK NE2 GLN A 30 CA CA A1004 1555 1555 3.19 LINK NZ LYS A 59 CA CA A1002 1555 1555 3.36 LINK OG SER A 69 CA CA A1003 1555 1555 3.30 LINK NZ LYS A 73 CA CA A1003 1555 1555 3.26 LINK NE2 GLN A 240 CA CA A1001 1555 1555 3.34 LINK OG SER A 312 CA CA A1003 1555 1555 3.20 LINK CA CA A1001 O HOH A1030 1555 1555 3.13 LINK CA CA A1001 O HOH A1183 1555 1555 3.21 LINK CA CA A1002 NE2 GLN B 240 1555 1555 3.25 LINK CA CA A1002 O HOH B 405 1555 1555 3.23 LINK CA CA A1002 O HOH B 658 1555 1555 3.13 LINK CA CA A1002 O HOH B 671 1555 1555 3.22 LINK CA CA A1003 O HOH A1251 1555 1555 3.35 LINK CA CA A1004 O HOH A1186 1555 1555 3.04 LINK CA CA A1004 O HOH A1364 1555 1555 3.08 CISPEP 1 SER A 53 PRO A 54 0 -6.55 CISPEP 2 THR A 279 PRO A 280 0 -3.69 CISPEP 3 SER B 53 PRO B 54 0 -6.22 CISPEP 4 THR B 279 PRO B 280 0 -3.93 SITE 1 AC1 2 GLN A 240 LYS B 59 SITE 1 AC2 2 LYS A 59 GLN B 240 SITE 1 AC3 4 SER A 69 LYS A 73 SER A 312 HIS A 317 SITE 1 AC4 4 LEU A 29 GLN A 30 HOH A1186 HOH A1364 SITE 1 AC5 7 SER A 22 CSD A 107 GLY A 108 ASN A 109 SITE 2 AC5 7 MET A 321 GLY A 322 THR A 323 SITE 1 AC6 8 ALA A 13 ALA A 14 THR A 15 PHE A 117 SITE 2 AC6 8 ASN A 121 HOH A1081 HOH A1090 HOH A1360 SITE 1 AC7 4 PRO A 184 ASN A 219 GLY A 221 HOH A1085 SITE 1 AC8 11 LEU A 250 PHE A 253 GLU A 254 ARG A 257 SITE 2 AC8 11 ILE A 282 LEU A 311 MET A 313 GLY A 314 SITE 3 AC8 11 HOH A1111 HOH A1113 HOH A1123 CRYST1 51.868 104.058 78.254 90.00 104.37 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019280 0.000000 0.004941 0.00000 SCALE2 0.000000 0.009610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013192 0.00000