HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 10-MAY-07 2PW4 OBSLTE 21-APR-09 2PW4 3H0N TITLE CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION DUF1470 TITLE 2 (YP_510353.1) FROM JANNASCHIA SP. CCS1 AT 1.45 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN DUF1470; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JANNASCHIA SP. CCS1; SOURCE 3 ORGANISM_TAXID: 290400; SOURCE 4 STRAIN: CCS1; SOURCE 5 GENE: YP_510353.1, JANN_2411; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_510353.1, PROTEIN OF UNKNOWN FUNCTION DUF1470, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 21-APR-09 2PW4 1 OBSLTE REVDAT 3 24-FEB-09 2PW4 1 VERSN REVDAT 2 07-OCT-08 2PW4 1 HETATM REMARK REVDAT 1 22-MAY-07 2PW4 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION JRNL TITL 2 DUF1470 (YP_510353.1) FROM JANNASCHIA SP. CCS1 AT JRNL TITL 3 1.45 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 36254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1810 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2519 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.1740 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.052 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.561 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1563 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1411 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2129 ; 1.493 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3258 ; 0.868 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 203 ; 5.478 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;27.708 ;23.205 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 242 ;10.793 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.639 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 235 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1815 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 323 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 382 ; 0.271 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1480 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 784 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 890 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 162 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.062 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 78 ; 0.281 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.244 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.067 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 981 ; 1.372 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 395 ; 0.375 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1572 ; 2.253 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 595 ; 3.753 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 555 ; 5.407 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4020 24.8910 20.0300 REMARK 3 T TENSOR REMARK 3 T11: -0.0038 T22: -0.0114 REMARK 3 T33: -0.0435 T12: -0.0144 REMARK 3 T13: 0.0165 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.8477 L22: 0.9910 REMARK 3 L33: 2.4071 L12: 0.0672 REMARK 3 L13: -1.6456 L23: -0.2143 REMARK 3 S TENSOR REMARK 3 S11: 0.1256 S12: -0.1261 S13: 0.0213 REMARK 3 S21: 0.0430 S22: -0.1284 S23: -0.0295 REMARK 3 S31: -0.2239 S32: 0.1828 S33: 0.0028 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7930 17.5010 19.4070 REMARK 3 T TENSOR REMARK 3 T11: 0.0621 T22: 0.0861 REMARK 3 T33: 0.0571 T12: 0.0052 REMARK 3 T13: -0.0060 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.0723 L22: 1.4895 REMARK 3 L33: 2.3048 L12: 0.3221 REMARK 3 L13: -0.3874 L23: -1.6149 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: -0.0041 S13: -0.0437 REMARK 3 S21: 0.1670 S22: -0.1240 S23: -0.1520 REMARK 3 S31: -0.1521 S32: 0.2374 S33: 0.1162 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5160 20.0580 15.4470 REMARK 3 T TENSOR REMARK 3 T11: -0.0146 T22: -0.0016 REMARK 3 T33: -0.0250 T12: 0.0093 REMARK 3 T13: 0.0046 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.5367 L22: 0.0651 REMARK 3 L33: 0.4766 L12: 0.0509 REMARK 3 L13: -0.2371 L23: -0.1300 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: -0.0038 S13: -0.0320 REMARK 3 S21: -0.0099 S22: 0.0088 S23: 0.0084 REMARK 3 S31: 0.0027 S32: 0.0374 S33: 0.0082 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 173 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4570 42.7370 3.7230 REMARK 3 T TENSOR REMARK 3 T11: 0.1733 T22: 0.1755 REMARK 3 T33: 0.0782 T12: -0.0724 REMARK 3 T13: -0.0044 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 6.7068 L22: 8.6325 REMARK 3 L33: 4.8587 L12: 7.5662 REMARK 3 L13: -1.3708 L23: -2.2124 REMARK 3 S TENSOR REMARK 3 S11: -0.5347 S12: 0.7191 S13: 0.0397 REMARK 3 S21: -0.5205 S22: 0.5398 S23: 0.0979 REMARK 3 S31: -0.2474 S32: 0.1463 S33: -0.0051 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. ONE ZN ION, ONE NI ION, TWO NA IONS, TWO ACETATE IONS, TWO REMARK 3 GLYCEROL MOLECULES AND TWO ETHYLENE GLYCOL MOLECULES WERE REMARK 3 MODELED. THE PRESENCE OF THE ZN AND NI ATOMS IS SUPPORTED REMARK 3 BY X-RAY FLUORESCENCE MEASUREMENTS, ANOMALOUS DIFFERENCE REMARK 3 FOURIERS AND GEOMETRY. REMARK 3 5. RESIDUES 185 TO 187 ARE DISORDERED AND NOT MODELED IN REMARK 3 THE STRUCTURE. REMARK 4 REMARK 4 2PW4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB042839. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97920, 0.97879 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36254 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 25.786 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 1.4M NAOAC, 0.1M REMARK 280 CACODYLATE PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.87500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.83500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.87500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.83500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -36.22237 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.06764 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 248 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ARG A 185 REMARK 465 ALA A 186 REMARK 465 THR A 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 NZ REMARK 470 ARG A 161 CD NE CZ NH1 NH2 REMARK 470 ASN A 162 CG OD1 ND2 REMARK 470 LYS A 177 CE NZ REMARK 470 ARG A 182 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 113 46.83 -94.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 92 O REMARK 620 2 ARG A 93 O 88.7 REMARK 620 3 HIS A 95 O 78.0 102.8 REMARK 620 4 HOH A 266 O 164.6 85.8 89.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 202 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 112 ND1 REMARK 620 2 HIS A 112 ND1 0.0 REMARK 620 3 HIS A 114 NE2 98.2 98.2 REMARK 620 4 HIS A 114 NE2 98.2 98.2 0.0 REMARK 620 5 HOH A 328 O 66.5 66.5 70.3 70.3 REMARK 620 6 HOH A 212 O 79.8 79.8 135.2 135.2 68.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 147 O REMARK 620 2 ALA A 149 O 112.9 REMARK 620 3 CYS A 152 O 83.2 96.5 REMARK 620 4 HOH A 232 O 99.4 87.5 174.0 REMARK 620 5 HOH A 213 O 91.9 155.2 86.0 88.5 REMARK 620 6 HOH A 219 O 157.8 86.9 84.7 91.1 68.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 147 SG REMARK 620 2 CYS A 152 SG 109.8 REMARK 620 3 CYS A 168 SG 110.6 107.1 REMARK 620 4 CYS A 172 SG 112.3 110.2 106.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 202 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 203 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 204 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 207 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 208 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 209 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 210 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 211 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 205 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 374450 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 2PW4 A 1 187 UNP Q28PN4 Q28PN4_JANSC 1 187 SEQADV 2PW4 GLY A 0 UNP Q28PN4 LEADER SEQUENCE SEQRES 1 A 188 GLY MSE ASN LEU ASP SER TYR GLU ARG THR GLY LEU ARG SEQRES 2 A 188 VAL SER LEU ASP LEU VAL ASN ILE ALA THR PRO GLY SER SEQRES 3 A 188 ARG ARG GLY THR PRO HIS THR GLY GLY CYS VAL ILE GLU SEQRES 4 A 188 ASP LEU HIS ASP LEU LEU LYS ASP ASP PRO ALA SER VAL SEQRES 5 A 188 ALA GLN LEU GLY ASP ASP HIS VAL GLU GLY PHE VAL GLU SEQRES 6 A 188 LEU ALA ARG LEU LEU HIS THR ALA ILE ASP ALA LEU SER SEQRES 7 A 188 ASN GLY GLN VAL ALA THR ALA ALA THR ALA LEU ASN HIS SEQRES 8 A 188 LEU LEU ARG LYS HIS PRO ALA THR PRO GLU LEU ALA GLN SEQRES 9 A 188 ASP PRO ASP GLY THR TRP ARG LEU HIS HIS HIS PRO LEU SEQRES 10 A 188 ASP ALA GLU LEU VAL PRO MSE TRP THR ALA ILE CYS ALA SEQRES 11 A 188 GLU GLY LEU ALA ARG GLU ILE GLY HIS GLN ASN VAL ARG SEQRES 12 A 188 ARG PHE GLY ILE CYS ASN ALA HIS ARG CYS ASP ARG VAL SEQRES 13 A 188 TYR PHE ASP THR SER ARG ASN GLY THR ARG GLN TYR CYS SEQRES 14 A 188 SER LEU ALA CYS GLN ASN ARG VAL LYS ALA ALA ALA PHE SEQRES 15 A 188 ARG GLU ARG ARG ALA THR MODRES 2PW4 MSE A 1 MET SELENOMETHIONINE MODRES 2PW4 MSE A 123 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 123 16 HET ZN A 201 1 HET NI A 202 2 HET NA A 203 1 HET NA A 204 1 HET ACT A 207 4 HET ACT A 208 4 HET ACT A 209 4 HET EDO A 210 4 HET EDO A 211 4 HET GOL A 205 6 HET GOL A 206 6 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM NI NICKEL (II) ION HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 NI NI 2+ FORMUL 4 NA 2(NA 1+) FORMUL 6 ACT 3(C2 H3 O2 1-) FORMUL 9 EDO 2(C2 H6 O2) FORMUL 11 GOL 2(C3 H8 O3) FORMUL 13 HOH *250(H2 O) HELIX 1 1 SER A 5 GLU A 7 5 3 HELIX 2 2 ARG A 8 THR A 22 1 15 HELIX 3 3 VAL A 36 LEU A 44 1 9 HELIX 4 4 ASP A 47 LEU A 54 1 8 HELIX 5 5 ASP A 57 ASN A 78 1 22 HELIX 6 6 GLN A 80 HIS A 95 1 16 HELIX 7 7 GLU A 119 HIS A 138 1 20 HELIX 8 8 ASN A 140 ARG A 142 5 3 HELIX 9 9 SER A 169 ALA A 180 1 12 SHEET 1 A 2 GLY A 24 ARG A 26 0 SHEET 2 A 2 THR A 29 HIS A 31 -1 O THR A 29 N ARG A 26 SHEET 1 B 2 GLU A 100 GLN A 103 0 SHEET 2 B 2 TRP A 109 HIS A 112 -1 O HIS A 112 N GLU A 100 SHEET 1 C 2 PHE A 144 ILE A 146 0 SHEET 2 C 2 VAL A 155 PHE A 157 -1 O TYR A 156 N GLY A 145 LINK C MSE A 1 N ASN A 2 1555 1555 1.34 LINK C PRO A 122 N BMSE A 123 1555 1555 1.32 LINK C PRO A 122 N AMSE A 123 1555 1555 1.33 LINK C BMSE A 123 N TRP A 124 1555 1555 1.33 LINK C AMSE A 123 N TRP A 124 1555 1555 1.33 LINK O LEU A 92 NA NA A 204 1555 1555 2.46 LINK O ARG A 93 NA NA A 204 1555 1555 2.59 LINK O HIS A 95 NA NA A 204 1555 1555 2.35 LINK ND1 HIS A 112 NI B NI A 202 1555 1555 2.51 LINK ND1 HIS A 112 NI A NI A 202 1555 1555 2.04 LINK NE2 HIS A 114 NI B NI A 202 1555 1555 2.36 LINK NE2 HIS A 114 NI A NI A 202 1555 1555 2.39 LINK O CYS A 147 NA NA A 203 1555 1555 2.40 LINK SG CYS A 147 ZN ZN A 201 1555 1555 2.31 LINK O ALA A 149 NA NA A 203 1555 1555 2.40 LINK O CYS A 152 NA NA A 203 1555 1555 2.29 LINK SG CYS A 152 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 168 ZN ZN A 201 1555 1555 2.35 LINK SG CYS A 172 ZN ZN A 201 1555 1555 2.29 LINK NI A NI A 202 O HOH A 328 1555 1555 2.24 LINK NI A NI A 202 O AHOH A 212 1555 1555 2.39 LINK NA NA A 203 O HOH A 232 1555 1555 2.34 LINK NA NA A 203 O AHOH A 213 1555 1555 2.78 LINK NA NA A 203 O HOH A 219 1555 1555 2.39 LINK NA NA A 204 O HOH A 266 1555 1555 2.36 SITE 1 AC1 4 CYS A 147 CYS A 152 CYS A 168 CYS A 172 SITE 1 AC2 5 HIS A 112 HIS A 114 ACT A 207 HOH A 212 SITE 2 AC2 5 HOH A 328 SITE 1 AC3 7 CYS A 147 ASN A 148 ALA A 149 CYS A 152 SITE 2 AC3 7 HOH A 213 HOH A 219 HOH A 232 SITE 1 AC4 6 LEU A 92 ARG A 93 HIS A 95 HOH A 243 SITE 2 AC4 6 HOH A 253 HOH A 266 SITE 1 AC5 8 TYR A 6 LEU A 111 HIS A 112 HIS A 113 SITE 2 AC5 8 HIS A 114 ILE A 127 NI A 202 HOH A 230 SITE 1 AC6 6 VAL A 141 ARG A 151 HOH A 223 HOH A 285 SITE 2 AC6 6 HOH A 408 HOH A 422 SITE 1 AC7 5 PRO A 96 ALA A 97 THR A 98 HOH A 243 SITE 2 AC7 5 HOH A 266 SITE 1 AC8 9 ARG A 142 ARG A 143 PHE A 144 TYR A 156 SITE 2 AC8 9 ASP A 158 GLY A 163 ARG A 165 HOH A 273 SITE 3 AC8 9 HOH A 294 SITE 1 AC9 7 GLU A 7 ARG A 110 HIS A 138 GLN A 139 SITE 2 AC9 7 HOH A 276 HOH A 416 HOH A 460 SITE 1 BC1 8 THR A 86 ASN A 89 LEU A 101 HOH A 256 SITE 2 BC1 8 HOH A 263 HOH A 356 HOH A 407 HOH A 426 SITE 1 BC2 4 ASN A 19 ARG A 26 ARG A 27 CYS A 168 CRYST1 77.750 59.670 57.820 90.00 128.79 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012860 0.000000 0.010340 0.00000 SCALE2 0.000000 0.016760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022190 0.00000 HETATM 1 N MSE A 1 -12.027 34.406 20.054 1.00 33.31 N HETATM 2 CA MSE A 1 -11.362 33.135 20.467 1.00 31.99 C HETATM 3 C MSE A 1 -9.979 33.269 21.125 1.00 28.90 C HETATM 4 O MSE A 1 -9.089 33.955 20.593 1.00 31.47 O HETATM 5 CB MSE A 1 -11.172 32.240 19.233 1.00 34.91 C HETATM 6 CG MSE A 1 -10.268 31.062 19.523 1.00 31.76 C HETATM 7 SE MSE A 1 -9.991 29.796 18.148 0.75 25.30 SE HETATM 8 CE MSE A 1 -11.896 29.624 17.489 1.00 17.38 C