data_2PW6 # _entry.id 2PW6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2PW6 RCSB RCSB042841 WWPDB D_1000042841 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id eco002003007.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PW6 _pdbx_database_status.recvd_initial_deposition_date 2007-05-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Newton, M.G.' 1 'Takagi, Y.' 2 'Ebihara, A.' 3 'Shinkai, A.' 4 'Kuramitsu, S.' 5 'Yokayama, S.' 6 'Li, Y.' 7 'Chen, L.' 8 'Zhu, J.' 9 'Ruble, J.' 10 'Liu, Z.J.' 11 'Rose, J.P.' 12 'Wang, B.-C.' 13 'Southeast Collaboratory for Structural Genomics (SECSG)' 14 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 15 # _citation.id primary _citation.title 'Crystal structure of uncharacterized protein JW3007 from Escherichia coli K12.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Newton, M.G.' 1 primary 'Takagi, Y.' 2 primary 'Ebihara, A.' 3 primary 'Shinkai, A.' 4 primary 'Kuramitsu, S.' 5 primary 'Yokayama, S.' 6 primary 'Li, Y.' 7 primary 'Chen, L.' 8 primary 'Zhu, J.' 9 primary 'Ruble, J.' 10 primary 'Liu, Z.J.' 11 primary 'Rose, J.P.' 12 primary 'Wang, B.-C.' 13 # _cell.entry_id 2PW6 _cell.length_a 83.940 _cell.length_b 83.940 _cell.length_c 85.509 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PW6 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein ygiD' 30492.955 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 3 water nat water 18.015 51 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)TPLVKDII(MSE)SSTR(MSE)PALFLGHGSP(MSE)NVLEDNLYTRSWQKLG(MSE)TLPRPQAIVVVSAHWFT RGTGVTA(MSE)ETPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIK(MSE)YP DADIP(MSE)VQLSIDSSKPAAWHFE(MSE)GRKLAALRDEGI(MSE)LVASGNVVHNLRTVKWHGDSSPYPWATSFNEY VKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAWDGQEPITIPVEGIE(MSE)GSLS(MSE)LSVQIG ; _entity_poly.pdbx_seq_one_letter_code_can ;MTPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGF PQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLA ALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLY VLGAWDGQEPITIPVEGIEMGSLSMLSVQIG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier eco002003007.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 THR n 1 3 PRO n 1 4 LEU n 1 5 VAL n 1 6 LYS n 1 7 ASP n 1 8 ILE n 1 9 ILE n 1 10 MSE n 1 11 SER n 1 12 SER n 1 13 THR n 1 14 ARG n 1 15 MSE n 1 16 PRO n 1 17 ALA n 1 18 LEU n 1 19 PHE n 1 20 LEU n 1 21 GLY n 1 22 HIS n 1 23 GLY n 1 24 SER n 1 25 PRO n 1 26 MSE n 1 27 ASN n 1 28 VAL n 1 29 LEU n 1 30 GLU n 1 31 ASP n 1 32 ASN n 1 33 LEU n 1 34 TYR n 1 35 THR n 1 36 ARG n 1 37 SER n 1 38 TRP n 1 39 GLN n 1 40 LYS n 1 41 LEU n 1 42 GLY n 1 43 MSE n 1 44 THR n 1 45 LEU n 1 46 PRO n 1 47 ARG n 1 48 PRO n 1 49 GLN n 1 50 ALA n 1 51 ILE n 1 52 VAL n 1 53 VAL n 1 54 VAL n 1 55 SER n 1 56 ALA n 1 57 HIS n 1 58 TRP n 1 59 PHE n 1 60 THR n 1 61 ARG n 1 62 GLY n 1 63 THR n 1 64 GLY n 1 65 VAL n 1 66 THR n 1 67 ALA n 1 68 MSE n 1 69 GLU n 1 70 THR n 1 71 PRO n 1 72 PRO n 1 73 THR n 1 74 ILE n 1 75 HIS n 1 76 ASP n 1 77 PHE n 1 78 GLY n 1 79 GLY n 1 80 PHE n 1 81 PRO n 1 82 GLN n 1 83 ALA n 1 84 LEU n 1 85 TYR n 1 86 ASP n 1 87 THR n 1 88 HIS n 1 89 TYR n 1 90 PRO n 1 91 ALA n 1 92 PRO n 1 93 GLY n 1 94 SER n 1 95 PRO n 1 96 ALA n 1 97 LEU n 1 98 ALA n 1 99 GLN n 1 100 ARG n 1 101 LEU n 1 102 VAL n 1 103 GLU n 1 104 LEU n 1 105 LEU n 1 106 ALA n 1 107 PRO n 1 108 ILE n 1 109 PRO n 1 110 VAL n 1 111 THR n 1 112 LEU n 1 113 ASP n 1 114 LYS n 1 115 GLU n 1 116 ALA n 1 117 TRP n 1 118 GLY n 1 119 PHE n 1 120 ASP n 1 121 HIS n 1 122 GLY n 1 123 SER n 1 124 TRP n 1 125 GLY n 1 126 VAL n 1 127 LEU n 1 128 ILE n 1 129 LYS n 1 130 MSE n 1 131 TYR n 1 132 PRO n 1 133 ASP n 1 134 ALA n 1 135 ASP n 1 136 ILE n 1 137 PRO n 1 138 MSE n 1 139 VAL n 1 140 GLN n 1 141 LEU n 1 142 SER n 1 143 ILE n 1 144 ASP n 1 145 SER n 1 146 SER n 1 147 LYS n 1 148 PRO n 1 149 ALA n 1 150 ALA n 1 151 TRP n 1 152 HIS n 1 153 PHE n 1 154 GLU n 1 155 MSE n 1 156 GLY n 1 157 ARG n 1 158 LYS n 1 159 LEU n 1 160 ALA n 1 161 ALA n 1 162 LEU n 1 163 ARG n 1 164 ASP n 1 165 GLU n 1 166 GLY n 1 167 ILE n 1 168 MSE n 1 169 LEU n 1 170 VAL n 1 171 ALA n 1 172 SER n 1 173 GLY n 1 174 ASN n 1 175 VAL n 1 176 VAL n 1 177 HIS n 1 178 ASN n 1 179 LEU n 1 180 ARG n 1 181 THR n 1 182 VAL n 1 183 LYS n 1 184 TRP n 1 185 HIS n 1 186 GLY n 1 187 ASP n 1 188 SER n 1 189 SER n 1 190 PRO n 1 191 TYR n 1 192 PRO n 1 193 TRP n 1 194 ALA n 1 195 THR n 1 196 SER n 1 197 PHE n 1 198 ASN n 1 199 GLU n 1 200 TYR n 1 201 VAL n 1 202 LYS n 1 203 ALA n 1 204 ASN n 1 205 LEU n 1 206 THR n 1 207 TRP n 1 208 GLN n 1 209 GLY n 1 210 PRO n 1 211 VAL n 1 212 GLU n 1 213 GLN n 1 214 HIS n 1 215 PRO n 1 216 LEU n 1 217 VAL n 1 218 ASN n 1 219 TYR n 1 220 LEU n 1 221 ASP n 1 222 HIS n 1 223 GLU n 1 224 GLY n 1 225 GLY n 1 226 THR n 1 227 LEU n 1 228 SER n 1 229 ASN n 1 230 PRO n 1 231 THR n 1 232 PRO n 1 233 GLU n 1 234 HIS n 1 235 TYR n 1 236 LEU n 1 237 PRO n 1 238 LEU n 1 239 LEU n 1 240 TYR n 1 241 VAL n 1 242 LEU n 1 243 GLY n 1 244 ALA n 1 245 TRP n 1 246 ASP n 1 247 GLY n 1 248 GLN n 1 249 GLU n 1 250 PRO n 1 251 ILE n 1 252 THR n 1 253 ILE n 1 254 PRO n 1 255 VAL n 1 256 GLU n 1 257 GLY n 1 258 ILE n 1 259 GLU n 1 260 MSE n 1 261 GLY n 1 262 SER n 1 263 LEU n 1 264 SER n 1 265 MSE n 1 266 LEU n 1 267 SER n 1 268 VAL n 1 269 GLN n 1 270 ILE n 1 271 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene 'ygiD, b3039, JW3007' _entity_src_gen.gene_src_species 'Escherichia coli' _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PCR2.1-TOPO _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YGID_ECOLI _struct_ref.pdbx_db_accession P24197 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGF PQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLA ALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLY VLGAWDGQEPITIPVEGIEMGSLSMLSVQIG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2PW6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 271 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P24197 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 271 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 271 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2PW6 MSE A 1 ? UNP P24197 MET 1 'MODIFIED RESIDUE' 1 1 1 2PW6 MSE A 10 ? UNP P24197 MET 10 'MODIFIED RESIDUE' 10 2 1 2PW6 MSE A 15 ? UNP P24197 MET 15 'MODIFIED RESIDUE' 15 3 1 2PW6 MSE A 26 ? UNP P24197 MET 26 'MODIFIED RESIDUE' 26 4 1 2PW6 MSE A 43 ? UNP P24197 MET 43 'MODIFIED RESIDUE' 43 5 1 2PW6 MSE A 68 ? UNP P24197 MET 68 'MODIFIED RESIDUE' 68 6 1 2PW6 MSE A 130 ? UNP P24197 MET 130 'MODIFIED RESIDUE' 130 7 1 2PW6 MSE A 138 ? UNP P24197 MET 138 'MODIFIED RESIDUE' 138 8 1 2PW6 MSE A 155 ? UNP P24197 MET 155 'MODIFIED RESIDUE' 155 9 1 2PW6 MSE A 168 ? UNP P24197 MET 168 'MODIFIED RESIDUE' 168 10 1 2PW6 MSE A 260 ? UNP P24197 MET 260 'MODIFIED RESIDUE' 260 11 1 2PW6 MSE A 265 ? UNP P24197 MET 265 'MODIFIED RESIDUE' 265 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2PW6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_percent_sol 56.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details ;2 microliter drops containing equal volumes of protein concentrate (11.38 mg/ml) in 20mM Tris-HCl, 200mM NaCl, 1mM DTT and resevoir solution containing 0.1M Hepes, 0.8M Sodium acetate, and 0.05M Cadmium sulfate, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2006-08-06 _diffrn_detector.details ROSENBAUM # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI CHANNEL 220' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97243 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97243 # _reflns.entry_id 2PW6 _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 72.74 _reflns.d_resolution_high 2.27 _reflns.number_obs 16342 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.096 _reflns.pdbx_netI_over_sigmaI 18.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 20.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.d_res_high 2.27 _reflns_shell.d_res_low 2.35 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.63 _reflns_shell.meanI_over_sigI_obs 5.63 _reflns_shell.pdbx_redundancy 20.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.entry_id 2PW6 _refine.ls_number_reflns_obs 15481 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 72.74 _refine.ls_d_res_high 2.27 _refine.ls_percent_reflns_obs 99.40 _refine.ls_R_factor_obs 0.23616 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23457 _refine.ls_R_factor_R_free 0.2667 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 825 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.936 _refine.correlation_coeff_Fo_to_Fc_free 0.918 _refine.B_iso_mean 48.677 _refine.aniso_B[1][1] -0.98 _refine.aniso_B[2][2] -0.98 _refine.aniso_B[3][3] 1.47 _refine.aniso_B[1][2] -0.49 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.270 _refine.pdbx_overall_ESU_R_Free 0.218 _refine.overall_SU_ML 0.169 _refine.overall_SU_B 6.833 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1869 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 1923 _refine_hist.d_res_high 2.27 _refine_hist.d_res_low 72.74 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 1928 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.703 1.950 ? 2638 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.772 5.000 ? 241 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.492 23.896 ? 77 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.814 15.000 ? 281 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.464 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.122 0.200 ? 286 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1484 'X-RAY DIFFRACTION' ? r_nbd_refined 0.213 0.200 ? 895 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.308 0.200 ? 1264 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.142 0.200 ? 69 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.055 0.200 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.228 0.200 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.245 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 0.482 0.200 ? 1 'X-RAY DIFFRACTION' ? r_mcbond_it 1.022 1.500 ? 1236 'X-RAY DIFFRACTION' ? r_mcangle_it 1.554 2.000 ? 1942 'X-RAY DIFFRACTION' ? r_scbond_it 2.197 3.000 ? 815 'X-RAY DIFFRACTION' ? r_scangle_it 3.008 4.500 ? 696 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.27 _refine_ls_shell.d_res_low 2.33 _refine_ls_shell.number_reflns_R_work 1101 _refine_ls_shell.R_factor_R_work 0.348 _refine_ls_shell.percent_reflns_obs 97.24 _refine_ls_shell.R_factor_R_free 0.355 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # _struct.entry_id 2PW6 _struct.title 'Crystal structure of uncharacterized protein JW3007 from Escherichia coli K12' _struct.pdbx_descriptor 'Uncharacterized protein ygiD' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PW6 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;JW3007, Uncharacterized protein, ESCHERICHIA COLI STRUCTURAL GENOMICS, PROTEIN STRUCTURE, Riken and PSI, Protein Structure Initiative, Southeast Collaboratory for Structural Genomics, SECSG, RIKEN Structural Genomics/Proteomics Initiative, RSGI, STRUCTURAL GENOMICS, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ;The biological assembly is a homo-dimer generated by a diagonal two-fold rotation axis of the space group [x,y,z; y,x,-z]. The homo-dimer has a very high complexation significance score (CSS) of 0.967 [PISA web site results at EBI]. The other four components of the unit cell are generated by operation of the three-fold screw axis 3(1). ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 32 ? LEU A 45 ? ASN A 32 LEU A 45 1 ? 14 HELX_P HELX_P2 2 SER A 94 ? ALA A 106 ? SER A 94 ALA A 106 1 ? 13 HELX_P HELX_P3 3 ASP A 120 ? TYR A 131 ? ASP A 120 TYR A 131 1 ? 12 HELX_P HELX_P4 4 PRO A 148 ? ALA A 160 ? PRO A 148 ALA A 160 1 ? 13 HELX_P HELX_P5 5 ALA A 161 ? GLU A 165 ? ALA A 161 GLU A 165 5 ? 5 HELX_P HELX_P6 6 TYR A 191 ? ALA A 203 ? TYR A 191 ALA A 203 1 ? 13 HELX_P HELX_P7 7 PRO A 210 ? HIS A 214 ? PRO A 210 HIS A 214 5 ? 5 HELX_P HELX_P8 8 ASN A 218 ? HIS A 222 ? ASN A 218 HIS A 222 5 ? 5 HELX_P HELX_P9 9 GLY A 224 ? ASN A 229 ? GLY A 224 ASN A 229 1 ? 6 HELX_P HELX_P10 10 TYR A 235 ? ALA A 244 ? TYR A 235 ALA A 244 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A HIS 22 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 22 A ZN 272 1_555 ? ? ? ? ? ? ? 2.400 ? metalc2 metalc ? ? A HIS 57 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 57 A ZN 272 1_555 ? ? ? ? ? ? ? 2.285 ? metalc3 metalc ? ? A HIS 177 O ? ? ? 1_555 D ZN . ZN ? ? A HIS 177 A ZN 274 1_555 ? ? ? ? ? ? ? 2.288 ? metalc4 metalc ? ? A HIS 177 ND1 ? ? ? 1_555 D ZN . ZN ? ? A HIS 177 A ZN 274 1_555 ? ? ? ? ? ? ? 2.048 ? metalc5 metalc ? ? A HIS 234 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 234 A ZN 272 1_555 ? ? ? ? ? ? ? 1.982 ? covale1 covale ? ? A ARG 14 C ? ? ? 1_555 A MSE 15 N ? ? A ARG 14 A MSE 15 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A MSE 15 C ? ? ? 1_555 A PRO 16 N ? ? A MSE 15 A PRO 16 1_555 ? ? ? ? ? ? ? 1.349 ? covale3 covale ? ? A PRO 25 C ? ? ? 1_555 A MSE 26 N ? ? A PRO 25 A MSE 26 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale ? ? A MSE 26 C ? ? ? 1_555 A ASN 27 N ? ? A MSE 26 A ASN 27 1_555 ? ? ? ? ? ? ? 1.340 ? covale5 covale ? ? A GLY 42 C ? ? ? 1_555 A MSE 43 N ? ? A GLY 42 A MSE 43 1_555 ? ? ? ? ? ? ? 1.332 ? covale6 covale ? ? A MSE 43 C ? ? ? 1_555 A THR 44 N ? ? A MSE 43 A THR 44 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale ? ? A ALA 67 C ? ? ? 1_555 A MSE 68 N ? ? A ALA 67 A MSE 68 1_555 ? ? ? ? ? ? ? 1.336 ? covale8 covale ? ? A MSE 68 C ? ? ? 1_555 A GLU 69 N ? ? A MSE 68 A GLU 69 1_555 ? ? ? ? ? ? ? 1.332 ? covale9 covale ? ? A LYS 129 C ? ? ? 1_555 A MSE 130 N ? ? A LYS 129 A MSE 130 1_555 ? ? ? ? ? ? ? 1.337 ? covale10 covale ? ? A MSE 130 C ? ? ? 1_555 A TYR 131 N ? ? A MSE 130 A TYR 131 1_555 ? ? ? ? ? ? ? 1.329 ? covale11 covale ? ? A PRO 137 C ? ? ? 1_555 A MSE 138 N ? ? A PRO 137 A MSE 138 1_555 ? ? ? ? ? ? ? 1.327 ? covale12 covale ? ? A MSE 138 C ? ? ? 1_555 A VAL 139 N ? ? A MSE 138 A VAL 139 1_555 ? ? ? ? ? ? ? 1.328 ? covale13 covale ? ? A GLU 154 C ? ? ? 1_555 A MSE 155 N ? ? A GLU 154 A MSE 155 1_555 ? ? ? ? ? ? ? 1.337 ? covale14 covale ? ? A MSE 155 C ? ? ? 1_555 A GLY 156 N ? ? A MSE 155 A GLY 156 1_555 ? ? ? ? ? ? ? 1.329 ? covale15 covale ? ? A ILE 167 C ? ? ? 1_555 A MSE 168 N ? ? A ILE 167 A MSE 168 1_555 ? ? ? ? ? ? ? 1.325 ? covale16 covale ? ? A MSE 168 C ? ? ? 1_555 A LEU 169 N ? ? A MSE 168 A LEU 169 1_555 ? ? ? ? ? ? ? 1.324 ? covale17 covale ? ? A GLU 259 C ? ? ? 1_555 A MSE 260 N ? ? A GLU 259 A MSE 260 1_555 ? ? ? ? ? ? ? 1.325 ? covale18 covale ? ? A MSE 260 C ? ? ? 1_555 A GLY 261 N ? ? A MSE 260 A GLY 261 1_555 ? ? ? ? ? ? ? 1.337 ? covale19 covale ? ? A SER 264 C ? ? ? 1_555 A MSE 265 N ? ? A SER 264 A MSE 265 1_555 ? ? ? ? ? ? ? 1.331 ? covale20 covale ? ? A MSE 265 C ? ? ? 1_555 A LEU 266 N ? ? A MSE 265 A LEU 266 1_555 ? ? ? ? ? ? ? 1.326 ? metalc6 metalc ? ? B ZN . ZN ? ? ? 1_555 E HOH . O ? ? A ZN 272 A HOH 277 1_555 ? ? ? ? ? ? ? 2.692 ? metalc7 metalc ? ? C ZN . ZN ? ? ? 1_555 A HIS 121 ND1 ? ? A ZN 273 A HIS 121 1_555 ? ? ? ? ? ? ? 2.518 ? metalc8 metalc ? ? B ZN . ZN ? ? ? 1_555 A ASP 86 OD2 ? ? A ZN 272 A ASP 86 4_555 ? ? ? ? ? ? ? 1.538 ? metalc9 metalc ? ? B ZN . ZN ? ? ? 1_555 A ASP 86 OD1 ? ? A ZN 272 A ASP 86 4_555 ? ? ? ? ? ? ? 2.765 ? metalc10 metalc ? ? C ZN . ZN ? ? ? 1_555 A HIS 121 ND1 ? ? A ZN 273 A HIS 121 4_555 ? ? ? ? ? ? ? 2.521 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 27 A . ? ASN 27 A VAL 28 A ? VAL 28 A 1 -1.55 2 ALA 106 A . ? ALA 106 A PRO 107 A ? PRO 107 A 1 3.23 3 GLY 186 A . ? GLY 186 A ASP 187 A ? ASP 187 A 1 5.14 4 GLU 223 A . ? GLU 223 A GLY 224 A ? GLY 224 A 1 20.99 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 110 ? ASP A 113 ? VAL A 110 ASP A 113 A 2 THR A 63 ? THR A 66 ? THR A 63 THR A 66 A 3 MSE A 138 ? ASP A 144 ? MSE A 138 ASP A 144 A 4 ALA A 50 ? THR A 60 ? ALA A 50 THR A 60 A 5 ILE A 167 ? GLY A 173 ? ILE A 167 GLY A 173 A 6 ALA A 17 ? GLY A 21 ? ALA A 17 GLY A 21 A 7 VAL A 268 ? ILE A 270 ? VAL A 268 ILE A 270 A 8 ILE A 251 ? THR A 252 ? ILE A 251 THR A 252 B 1 ILE A 258 ? GLU A 259 ? ILE A 258 GLU A 259 B 2 LEU A 263 ? SER A 264 ? LEU A 263 SER A 264 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 113 ? O ASP A 113 N VAL A 65 ? N VAL A 65 A 2 3 N GLY A 64 ? N GLY A 64 O SER A 142 ? O SER A 142 A 3 4 O ILE A 143 ? O ILE A 143 N TRP A 58 ? N TRP A 58 A 4 5 N VAL A 54 ? N VAL A 54 O VAL A 170 ? O VAL A 170 A 5 6 O ALA A 171 ? O ALA A 171 N LEU A 18 ? N LEU A 18 A 6 7 N ALA A 17 ? N ALA A 17 O ILE A 270 ? O ILE A 270 A 7 8 O GLN A 269 ? O GLN A 269 N THR A 252 ? N THR A 252 B 1 2 N GLU A 259 ? N GLU A 259 O LEU A 263 ? O LEU A 263 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE ZN A 272' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE ZN A 273' AC3 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE ZN A 274' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 22 ? HIS A 22 . ? 1_555 ? 2 AC1 5 HIS A 57 ? HIS A 57 . ? 1_555 ? 3 AC1 5 ASP A 86 ? ASP A 86 . ? 4_555 ? 4 AC1 5 HIS A 234 ? HIS A 234 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH A 277 . ? 1_555 ? 6 AC2 2 HIS A 121 ? HIS A 121 . ? 1_555 ? 7 AC2 2 HIS A 121 ? HIS A 121 . ? 4_555 ? 8 AC3 1 HIS A 177 ? HIS A 177 . ? 1_555 ? # _database_PDB_matrix.entry_id 2PW6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2PW6 _atom_sites.fract_transf_matrix[1][1] 0.011913 _atom_sites.fract_transf_matrix[1][2] 0.006878 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013756 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011695 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 PRO 3 3 ? ? ? A . n A 1 4 LEU 4 4 ? ? ? A . n A 1 5 VAL 5 5 ? ? ? A . n A 1 6 LYS 6 6 ? ? ? A . n A 1 7 ASP 7 7 ? ? ? A . n A 1 8 ILE 8 8 ? ? ? A . n A 1 9 ILE 9 9 ? ? ? A . n A 1 10 MSE 10 10 ? ? ? A . n A 1 11 SER 11 11 ? ? ? A . n A 1 12 SER 12 12 ? ? ? A . n A 1 13 THR 13 13 ? ? ? A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 MSE 15 15 15 MSE MSE A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 SER 24 24 ? ? ? A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 MSE 26 26 26 MSE MSE A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 TRP 38 38 38 TRP TRP A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 MSE 43 43 43 MSE MSE A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 TRP 58 58 58 TRP TRP A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 MSE 68 68 68 MSE MSE A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 PRO 71 71 ? ? ? A . n A 1 72 PRO 72 72 ? ? ? A . n A 1 73 THR 73 73 ? ? ? A . n A 1 74 ILE 74 74 ? ? ? A . n A 1 75 HIS 75 75 ? ? ? A . n A 1 76 ASP 76 76 ? ? ? A . n A 1 77 PHE 77 77 ? ? ? A . n A 1 78 GLY 78 78 ? ? ? A . n A 1 79 GLY 79 79 ? ? ? A . n A 1 80 PHE 80 80 ? ? ? A . n A 1 81 PRO 81 81 ? ? ? A . n A 1 82 GLN 82 82 ? ? ? A . n A 1 83 ALA 83 83 ? ? ? A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 PRO 90 90 90 PRO PRO A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 TRP 117 117 117 TRP TRP A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 PHE 119 119 119 PHE PHE A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 HIS 121 121 121 HIS HIS A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 TRP 124 124 124 TRP TRP A . n A 1 125 GLY 125 125 125 GLY GLY A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 MSE 130 130 130 MSE MSE A . n A 1 131 TYR 131 131 131 TYR TYR A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 PRO 137 137 137 PRO PRO A . n A 1 138 MSE 138 138 138 MSE MSE A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 GLN 140 140 140 GLN GLN A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 ILE 143 143 143 ILE ILE A . n A 1 144 ASP 144 144 144 ASP ASP A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 ALA 150 150 150 ALA ALA A . n A 1 151 TRP 151 151 151 TRP TRP A . n A 1 152 HIS 152 152 152 HIS HIS A . n A 1 153 PHE 153 153 153 PHE PHE A . n A 1 154 GLU 154 154 154 GLU GLU A . n A 1 155 MSE 155 155 155 MSE MSE A . n A 1 156 GLY 156 156 156 GLY GLY A . n A 1 157 ARG 157 157 157 ARG ARG A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 ARG 163 163 163 ARG ARG A . n A 1 164 ASP 164 164 164 ASP ASP A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 GLY 166 166 166 GLY GLY A . n A 1 167 ILE 167 167 167 ILE ILE A . n A 1 168 MSE 168 168 168 MSE MSE A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 VAL 170 170 170 VAL VAL A . n A 1 171 ALA 171 171 171 ALA ALA A . n A 1 172 SER 172 172 172 SER SER A . n A 1 173 GLY 173 173 173 GLY GLY A . n A 1 174 ASN 174 174 174 ASN ASN A . n A 1 175 VAL 175 175 175 VAL VAL A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 HIS 177 177 177 HIS HIS A . n A 1 178 ASN 178 178 178 ASN ASN A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 ARG 180 180 180 ARG ARG A . n A 1 181 THR 181 181 181 THR THR A . n A 1 182 VAL 182 182 182 VAL VAL A . n A 1 183 LYS 183 183 183 LYS LYS A . n A 1 184 TRP 184 184 184 TRP TRP A . n A 1 185 HIS 185 185 185 HIS HIS A . n A 1 186 GLY 186 186 186 GLY GLY A . n A 1 187 ASP 187 187 187 ASP ASP A . n A 1 188 SER 188 188 188 SER SER A . n A 1 189 SER 189 189 189 SER SER A . n A 1 190 PRO 190 190 190 PRO PRO A . n A 1 191 TYR 191 191 191 TYR TYR A . n A 1 192 PRO 192 192 192 PRO PRO A . n A 1 193 TRP 193 193 193 TRP TRP A . n A 1 194 ALA 194 194 194 ALA ALA A . n A 1 195 THR 195 195 195 THR THR A . n A 1 196 SER 196 196 196 SER SER A . n A 1 197 PHE 197 197 197 PHE PHE A . n A 1 198 ASN 198 198 198 ASN ASN A . n A 1 199 GLU 199 199 199 GLU GLU A . n A 1 200 TYR 200 200 200 TYR TYR A . n A 1 201 VAL 201 201 201 VAL VAL A . n A 1 202 LYS 202 202 202 LYS LYS A . n A 1 203 ALA 203 203 203 ALA ALA A . n A 1 204 ASN 204 204 204 ASN ASN A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 THR 206 206 206 THR THR A . n A 1 207 TRP 207 207 207 TRP TRP A . n A 1 208 GLN 208 208 208 GLN GLN A . n A 1 209 GLY 209 209 209 GLY GLY A . n A 1 210 PRO 210 210 210 PRO PRO A . n A 1 211 VAL 211 211 211 VAL VAL A . n A 1 212 GLU 212 212 212 GLU GLU A . n A 1 213 GLN 213 213 213 GLN GLN A . n A 1 214 HIS 214 214 214 HIS HIS A . n A 1 215 PRO 215 215 215 PRO PRO A . n A 1 216 LEU 216 216 216 LEU LEU A . n A 1 217 VAL 217 217 217 VAL VAL A . n A 1 218 ASN 218 218 218 ASN ASN A . n A 1 219 TYR 219 219 219 TYR TYR A . n A 1 220 LEU 220 220 220 LEU LEU A . n A 1 221 ASP 221 221 221 ASP ASP A . n A 1 222 HIS 222 222 222 HIS HIS A . n A 1 223 GLU 223 223 223 GLU GLU A . n A 1 224 GLY 224 224 224 GLY GLY A . n A 1 225 GLY 225 225 225 GLY GLY A . n A 1 226 THR 226 226 226 THR THR A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 SER 228 228 228 SER SER A . n A 1 229 ASN 229 229 229 ASN ASN A . n A 1 230 PRO 230 230 230 PRO PRO A . n A 1 231 THR 231 231 231 THR THR A . n A 1 232 PRO 232 232 232 PRO PRO A . n A 1 233 GLU 233 233 233 GLU GLU A . n A 1 234 HIS 234 234 234 HIS HIS A . n A 1 235 TYR 235 235 235 TYR TYR A . n A 1 236 LEU 236 236 236 LEU LEU A . n A 1 237 PRO 237 237 237 PRO PRO A . n A 1 238 LEU 238 238 238 LEU LEU A . n A 1 239 LEU 239 239 239 LEU LEU A . n A 1 240 TYR 240 240 240 TYR TYR A . n A 1 241 VAL 241 241 241 VAL VAL A . n A 1 242 LEU 242 242 242 LEU LEU A . n A 1 243 GLY 243 243 243 GLY GLY A . n A 1 244 ALA 244 244 244 ALA ALA A . n A 1 245 TRP 245 245 245 TRP TRP A . n A 1 246 ASP 246 246 246 ASP ASP A . n A 1 247 GLY 247 247 247 GLY GLY A . n A 1 248 GLN 248 248 248 GLN GLN A . n A 1 249 GLU 249 249 249 GLU GLU A . n A 1 250 PRO 250 250 250 PRO PRO A . n A 1 251 ILE 251 251 251 ILE ILE A . n A 1 252 THR 252 252 252 THR THR A . n A 1 253 ILE 253 253 253 ILE ILE A . n A 1 254 PRO 254 254 254 PRO PRO A . n A 1 255 VAL 255 255 255 VAL VAL A . n A 1 256 GLU 256 256 256 GLU GLU A . n A 1 257 GLY 257 257 257 GLY GLY A . n A 1 258 ILE 258 258 258 ILE ILE A . n A 1 259 GLU 259 259 259 GLU GLU A . n A 1 260 MSE 260 260 260 MSE MSE A . n A 1 261 GLY 261 261 261 GLY GLY A . n A 1 262 SER 262 262 262 SER SER A . n A 1 263 LEU 263 263 263 LEU LEU A . n A 1 264 SER 264 264 264 SER SER A . n A 1 265 MSE 265 265 265 MSE MSE A . n A 1 266 LEU 266 266 266 LEU LEU A . n A 1 267 SER 267 267 267 SER SER A . n A 1 268 VAL 268 268 268 VAL VAL A . n A 1 269 GLN 269 269 269 GLN GLN A . n A 1 270 ILE 270 270 270 ILE ILE A . n A 1 271 GLY 271 271 271 GLY GLY A . n # loop_ _pdbx_SG_project.id _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.initial_of_center 1 'PSI, Protein Structure Initiative' 'Southeast Collaboratory for Structural Genomics' SECSG 2 'NPPSFA, National Project on Protein Structural and Functional Analyses' 'RIKEN Structural Genomics/Proteomics Initiative' RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 272 272 ZN ZN A . C 2 ZN 1 273 273 ZN ZN A . D 2 ZN 1 274 274 ZN ZN A . E 3 HOH 1 275 6 HOH HOH A . E 3 HOH 2 276 8 HOH HOH A . E 3 HOH 3 277 9 HOH HOH A . E 3 HOH 4 278 10 HOH HOH A . E 3 HOH 5 279 11 HOH HOH A . E 3 HOH 6 280 12 HOH HOH A . E 3 HOH 7 281 13 HOH HOH A . E 3 HOH 8 282 14 HOH HOH A . E 3 HOH 9 283 15 HOH HOH A . E 3 HOH 10 284 16 HOH HOH A . E 3 HOH 11 285 17 HOH HOH A . E 3 HOH 12 286 19 HOH HOH A . E 3 HOH 13 287 20 HOH HOH A . E 3 HOH 14 288 21 HOH HOH A . E 3 HOH 15 289 22 HOH HOH A . E 3 HOH 16 290 24 HOH HOH A . E 3 HOH 17 291 25 HOH HOH A . E 3 HOH 18 292 28 HOH HOH A . E 3 HOH 19 293 29 HOH HOH A . E 3 HOH 20 294 30 HOH HOH A . E 3 HOH 21 295 31 HOH HOH A . E 3 HOH 22 296 33 HOH HOH A . E 3 HOH 23 297 34 HOH HOH A . E 3 HOH 24 298 35 HOH HOH A . E 3 HOH 25 299 37 HOH HOH A . E 3 HOH 26 300 43 HOH HOH A . E 3 HOH 27 301 44 HOH HOH A . E 3 HOH 28 302 47 HOH HOH A . E 3 HOH 29 303 49 HOH HOH A . E 3 HOH 30 304 50 HOH HOH A . E 3 HOH 31 305 51 HOH HOH A . E 3 HOH 32 306 52 HOH HOH A . E 3 HOH 33 307 53 HOH HOH A . E 3 HOH 34 308 54 HOH HOH A . E 3 HOH 35 309 56 HOH HOH A . E 3 HOH 36 310 58 HOH HOH A . E 3 HOH 37 311 59 HOH HOH A . E 3 HOH 38 312 61 HOH HOH A . E 3 HOH 39 313 62 HOH HOH A . E 3 HOH 40 314 63 HOH HOH A . E 3 HOH 41 315 64 HOH HOH A . E 3 HOH 42 316 66 HOH HOH A . E 3 HOH 43 317 67 HOH HOH A . E 3 HOH 44 318 70 HOH HOH A . E 3 HOH 45 319 76 HOH HOH A . E 3 HOH 46 320 81 HOH HOH A . E 3 HOH 47 321 83 HOH HOH A . E 3 HOH 48 322 84 HOH HOH A . E 3 HOH 49 323 85 HOH HOH A . E 3 HOH 50 324 86 HOH HOH A . E 3 HOH 51 325 91 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 15 A MSE 15 ? MET SELENOMETHIONINE 2 A MSE 26 A MSE 26 ? MET SELENOMETHIONINE 3 A MSE 43 A MSE 43 ? MET SELENOMETHIONINE 4 A MSE 68 A MSE 68 ? MET SELENOMETHIONINE 5 A MSE 130 A MSE 130 ? MET SELENOMETHIONINE 6 A MSE 138 A MSE 138 ? MET SELENOMETHIONINE 7 A MSE 155 A MSE 155 ? MET SELENOMETHIONINE 8 A MSE 168 A MSE 168 ? MET SELENOMETHIONINE 9 A MSE 260 A MSE 260 ? MET SELENOMETHIONINE 10 A MSE 265 A MSE 265 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2350 ? 1 MORE -202 ? 1 'SSA (A^2)' 18970 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id ZN _pdbx_struct_special_symmetry.auth_seq_id 273 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id ZN _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 22 ? A HIS 22 ? 1_555 ZN ? B ZN . ? A ZN 272 ? 1_555 NE2 ? A HIS 57 ? A HIS 57 ? 1_555 110.8 ? 2 NE2 ? A HIS 22 ? A HIS 22 ? 1_555 ZN ? B ZN . ? A ZN 272 ? 1_555 NE2 ? A HIS 234 ? A HIS 234 ? 1_555 112.7 ? 3 NE2 ? A HIS 57 ? A HIS 57 ? 1_555 ZN ? B ZN . ? A ZN 272 ? 1_555 NE2 ? A HIS 234 ? A HIS 234 ? 1_555 94.5 ? 4 NE2 ? A HIS 22 ? A HIS 22 ? 1_555 ZN ? B ZN . ? A ZN 272 ? 1_555 O ? E HOH . ? A HOH 277 ? 1_555 84.2 ? 5 NE2 ? A HIS 57 ? A HIS 57 ? 1_555 ZN ? B ZN . ? A ZN 272 ? 1_555 O ? E HOH . ? A HOH 277 ? 1_555 160.0 ? 6 NE2 ? A HIS 234 ? A HIS 234 ? 1_555 ZN ? B ZN . ? A ZN 272 ? 1_555 O ? E HOH . ? A HOH 277 ? 1_555 91.5 ? 7 NE2 ? A HIS 22 ? A HIS 22 ? 1_555 ZN ? B ZN . ? A ZN 272 ? 1_555 OD2 ? A ASP 86 ? A ASP 86 ? 4_555 106.5 ? 8 NE2 ? A HIS 57 ? A HIS 57 ? 1_555 ZN ? B ZN . ? A ZN 272 ? 1_555 OD2 ? A ASP 86 ? A ASP 86 ? 4_555 78.6 ? 9 NE2 ? A HIS 234 ? A HIS 234 ? 1_555 ZN ? B ZN . ? A ZN 272 ? 1_555 OD2 ? A ASP 86 ? A ASP 86 ? 4_555 140.1 ? 10 O ? E HOH . ? A HOH 277 ? 1_555 ZN ? B ZN . ? A ZN 272 ? 1_555 OD2 ? A ASP 86 ? A ASP 86 ? 4_555 84.5 ? 11 NE2 ? A HIS 22 ? A HIS 22 ? 1_555 ZN ? B ZN . ? A ZN 272 ? 1_555 OD1 ? A ASP 86 ? A ASP 86 ? 4_555 152.7 ? 12 NE2 ? A HIS 57 ? A HIS 57 ? 1_555 ZN ? B ZN . ? A ZN 272 ? 1_555 OD1 ? A ASP 86 ? A ASP 86 ? 4_555 86.2 ? 13 NE2 ? A HIS 234 ? A HIS 234 ? 1_555 ZN ? B ZN . ? A ZN 272 ? 1_555 OD1 ? A ASP 86 ? A ASP 86 ? 4_555 86.0 ? 14 O ? E HOH . ? A HOH 277 ? 1_555 ZN ? B ZN . ? A ZN 272 ? 1_555 OD1 ? A ASP 86 ? A ASP 86 ? 4_555 75.2 ? 15 OD2 ? A ASP 86 ? A ASP 86 ? 4_555 ZN ? B ZN . ? A ZN 272 ? 1_555 OD1 ? A ASP 86 ? A ASP 86 ? 4_555 54.6 ? 16 O ? A HIS 177 ? A HIS 177 ? 1_555 ZN ? D ZN . ? A ZN 274 ? 1_555 ND1 ? A HIS 177 ? A HIS 177 ? 1_555 77.6 ? 17 ND1 ? A HIS 121 ? A HIS 121 ? 1_555 ZN ? C ZN . ? A ZN 273 ? 1_555 ND1 ? A HIS 121 ? A HIS 121 ? 4_555 103.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-06-12 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-09-13 5 'Structure model' 1 4 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' refine 2 5 'Structure model' audit_author 3 5 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_refine.pdbx_method_to_determine_struct' 2 5 'Structure model' '_audit_author.name' 3 5 'Structure model' '_citation_author.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SCA2STRUCTURE 'model building' . ? 1 REFMAC refinement 5.2.0019 ? 2 SERGUI 'data collection' . ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 SCA2STRUCTURE phasing . ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 37 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 CB _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 LYS _pdbx_validate_close_contact.auth_seq_id_2 40 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 86 ? ? CG A ASP 86 ? ? OD1 A ASP 86 ? ? 112.41 118.30 -5.89 0.90 N 2 1 CB A ASP 86 ? ? CG A ASP 86 ? ? OD2 A ASP 86 ? ? 126.08 118.30 7.78 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 27 ? ? -147.74 -144.15 2 1 VAL A 28 ? ? -162.16 -108.91 3 1 LEU A 29 ? ? 157.70 -59.45 4 1 ASP A 31 ? ? -117.08 -94.11 5 1 LYS A 40 ? ? 65.64 -113.73 6 1 ASN A 174 ? ? -171.31 115.42 7 1 HIS A 177 ? ? -158.39 84.19 8 1 SER A 188 ? ? 145.38 -6.37 9 1 ASN A 218 ? ? -91.12 40.01 10 1 ASN A 229 ? ? -151.19 76.30 11 1 GLN A 248 ? ? -122.93 -52.77 12 1 LEU A 266 ? ? -51.36 109.38 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLN _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 39 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 LYS _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 40 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 74.22 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PRO 25 ? CG ? A PRO 25 CG 2 1 Y 1 A PRO 25 ? CD ? A PRO 25 CD 3 1 Y 1 A ASN 27 ? CB ? A ASN 27 CB 4 1 Y 1 A ASN 27 ? CG ? A ASN 27 CG 5 1 Y 1 A ASN 27 ? OD1 ? A ASN 27 OD1 6 1 Y 1 A ASN 27 ? ND2 ? A ASN 27 ND2 7 1 Y 1 A VAL 28 ? CB ? A VAL 28 CB 8 1 Y 1 A VAL 28 ? CG1 ? A VAL 28 CG1 9 1 Y 1 A VAL 28 ? CG2 ? A VAL 28 CG2 10 1 Y 1 A LEU 29 ? CB ? A LEU 29 CB 11 1 Y 1 A LEU 29 ? CG ? A LEU 29 CG 12 1 Y 1 A LEU 29 ? CD1 ? A LEU 29 CD1 13 1 Y 1 A LEU 29 ? CD2 ? A LEU 29 CD2 14 1 Y 1 A GLU 30 ? CB ? A GLU 30 CB 15 1 Y 1 A GLU 30 ? CG ? A GLU 30 CG 16 1 Y 1 A GLU 30 ? CD ? A GLU 30 CD 17 1 Y 1 A GLU 30 ? OE1 ? A GLU 30 OE1 18 1 Y 1 A GLU 30 ? OE2 ? A GLU 30 OE2 19 1 Y 1 A ARG 36 ? CG ? A ARG 36 CG 20 1 Y 1 A ARG 36 ? CD ? A ARG 36 CD 21 1 Y 1 A ARG 36 ? NE ? A ARG 36 NE 22 1 Y 1 A ARG 36 ? CZ ? A ARG 36 CZ 23 1 Y 1 A ARG 36 ? NH1 ? A ARG 36 NH1 24 1 Y 1 A ARG 36 ? NH2 ? A ARG 36 NH2 25 1 Y 1 A SER 37 ? OG ? A SER 37 OG 26 1 Y 1 A LYS 40 ? CG ? A LYS 40 CG 27 1 Y 1 A LYS 40 ? CD ? A LYS 40 CD 28 1 Y 1 A LYS 40 ? CE ? A LYS 40 CE 29 1 Y 1 A LYS 40 ? NZ ? A LYS 40 NZ 30 1 Y 1 A ILE 51 ? CD1 ? A ILE 51 CD1 31 1 Y 1 A GLU 69 ? CG ? A GLU 69 CG 32 1 Y 1 A GLU 69 ? CD ? A GLU 69 CD 33 1 Y 1 A GLU 69 ? OE1 ? A GLU 69 OE1 34 1 Y 1 A GLU 69 ? OE2 ? A GLU 69 OE2 35 1 Y 1 A THR 70 ? OG1 ? A THR 70 OG1 36 1 Y 1 A THR 70 ? CG2 ? A THR 70 CG2 37 1 Y 1 A SER 188 ? CB ? A SER 188 CB 38 1 Y 1 A SER 188 ? OG ? A SER 188 OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A PRO 3 ? A PRO 3 4 1 Y 1 A LEU 4 ? A LEU 4 5 1 Y 1 A VAL 5 ? A VAL 5 6 1 Y 1 A LYS 6 ? A LYS 6 7 1 Y 1 A ASP 7 ? A ASP 7 8 1 Y 1 A ILE 8 ? A ILE 8 9 1 Y 1 A ILE 9 ? A ILE 9 10 1 Y 1 A MSE 10 ? A MSE 10 11 1 Y 1 A SER 11 ? A SER 11 12 1 Y 1 A SER 12 ? A SER 12 13 1 Y 1 A THR 13 ? A THR 13 14 1 Y 1 A SER 24 ? A SER 24 15 1 Y 1 A PRO 71 ? A PRO 71 16 1 Y 1 A PRO 72 ? A PRO 72 17 1 Y 1 A THR 73 ? A THR 73 18 1 Y 1 A ILE 74 ? A ILE 74 19 1 Y 1 A HIS 75 ? A HIS 75 20 1 Y 1 A ASP 76 ? A ASP 76 21 1 Y 1 A PHE 77 ? A PHE 77 22 1 Y 1 A GLY 78 ? A GLY 78 23 1 Y 1 A GLY 79 ? A GLY 79 24 1 Y 1 A PHE 80 ? A PHE 80 25 1 Y 1 A PRO 81 ? A PRO 81 26 1 Y 1 A GLN 82 ? A GLN 82 27 1 Y 1 A ALA 83 ? A ALA 83 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 water HOH #