HEADER ISOMERASE 11-MAY-07 2PWD TITLE CRYSTAL STRUCTURE OF THE TREHALULOSE SYNTHASE MUTB FROM PSEUDOMONAS TITLE 2 MESOACIDOPHILA MX-45 COMPLEXED TO THE INHIBITOR DEOXYNOJIRMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCROSE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.4.99.11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS MESOACIDOPHILA; SOURCE 3 ORGANISM_TAXID: 265293; SOURCE 4 STRAIN: MX-45; SOURCE 5 GENE: MUTB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHWG315 KEYWDS TREHALULOSE SYNTHASE, SUCROSE ISOMERASE, ALPHA-AMYLASE FAMILY, KEYWDS 2 (BETA/ALPHA)8 BARREL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RAVAUD,X.ROBERT,R.HASER,N.AGHAJARI REVDAT 6 30-AUG-23 2PWD 1 REMARK LINK REVDAT 5 13-JUL-11 2PWD 1 VERSN REVDAT 4 24-FEB-09 2PWD 1 VERSN REVDAT 3 24-JUL-07 2PWD 1 JRNL REVDAT 2 10-JUL-07 2PWD 1 JRNL REVDAT 1 26-JUN-07 2PWD 0 JRNL AUTH S.RAVAUD,X.ROBERT,H.WATZLAWICK,R.HASER,R.MATTES,N.AGHAJARI JRNL TITL TREHALULOSE SYNTHASE NATIVE AND CARBOHYDRATE COMPLEXED JRNL TITL 2 STRUCTURES PROVIDE INSIGHTS INTO SUCROSE ISOMERIZATION. JRNL REF J.BIOL.CHEM. V. 61 100 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17597061 JRNL DOI 10.1074/JBC.M704515200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1675716.150 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 110211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5570 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 17119 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 912 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8935 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 1515 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : 2.32000 REMARK 3 B33 (A**2) : -2.64000 REMARK 3 B12 (A**2) : -3.94000 REMARK 3 B13 (A**2) : -1.21000 REMARK 3 B23 (A**2) : 2.54000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.050 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.640 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.810 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.760 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 44.83 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NOJ.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NOJ.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PWD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9330 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110212 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 9.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27000 REMARK 200 FOR SHELL : 3.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1ZJA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG20000, 0.1M NA CACODYLATE, REMARK 280 0.01M L-CYSTEINE, PH 6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 1 CB CG CD CE NZ REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 ASP A 134 CG OD1 OD2 REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 ASP A 248 CG OD1 OD2 REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 470 GLU A 403 CG CD OE1 OE2 REMARK 470 GLU A 501 CG CD OE1 OE2 REMARK 470 SER A 515 OG REMARK 470 ASP A 520 CG OD1 OD2 REMARK 470 GLU A 526 CG CD OE1 OE2 REMARK 470 LYS B 1 CG CD CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 110 CG CD OE1 OE2 REMARK 470 ASP B 120 CG OD1 OD2 REMARK 470 LYS B 133 CG CD CE NZ REMARK 470 ASP B 134 CG OD1 OD2 REMARK 470 GLU B 217 CG CD OE1 OE2 REMARK 470 LYS B 220 CG CD CE NZ REMARK 470 ASP B 245 CG OD1 OD2 REMARK 470 ASP B 248 CG OD1 OD2 REMARK 470 GLU B 315 CG CD OE1 OE2 REMARK 470 GLU B 403 CG CD OE1 OE2 REMARK 470 GLU B 446 CG CD OE1 OE2 REMARK 470 GLU B 472 CG CD OE1 OE2 REMARK 470 GLU B 501 CG CD OE1 OE2 REMARK 470 GLU B 526 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 20 -64.02 -94.17 REMARK 500 ASP A 68 110.13 -161.86 REMARK 500 HIS A 136 -153.56 -131.87 REMARK 500 PHE A 164 -133.28 -100.79 REMARK 500 THR A 201 55.91 33.31 REMARK 500 VAL A 243 -71.97 -119.17 REMARK 500 GLU A 273 -96.52 -121.06 REMARK 500 SER A 477 -72.96 -105.73 REMARK 500 ALA A 511 38.08 -85.53 REMARK 500 TRP A 549 16.42 55.64 REMARK 500 PHE B 20 -67.40 -90.86 REMARK 500 PRO B 53 129.15 -39.21 REMARK 500 HIS B 136 -146.65 -138.31 REMARK 500 PHE B 164 -130.76 -101.77 REMARK 500 THR B 201 58.35 34.90 REMARK 500 VAL B 243 -70.00 -120.14 REMARK 500 GLU B 273 -96.96 -118.29 REMARK 500 ALA B 511 33.72 -83.52 REMARK 500 ILE B 529 149.63 -174.12 REMARK 500 TRP B 549 16.13 57.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A7001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 22 OD1 REMARK 620 2 ASN A 24 OD1 77.7 REMARK 620 3 ASP A 26 OD1 82.3 78.2 REMARK 620 4 ILE A 28 O 80.0 153.2 84.3 REMARK 620 5 ASP A 30 OD2 85.3 100.6 167.5 92.1 REMARK 620 6 HOH A4531 O 156.6 112.0 79.3 84.0 112.4 REMARK 620 7 HOH A4715 O 139.5 73.3 117.8 133.3 73.1 63.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B7000 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 22 OD1 REMARK 620 2 ASN B 24 OD1 75.8 REMARK 620 3 ASP B 26 OD1 83.9 77.4 REMARK 620 4 ILE B 28 O 80.4 150.5 83.2 REMARK 620 5 ASP B 30 OD2 83.5 99.7 167.5 94.5 REMARK 620 6 HOH B4097 O 137.2 77.9 122.0 131.6 68.4 REMARK 620 7 HOH B4405 O 163.1 113.1 84.1 86.3 108.1 59.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 7000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 7001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NOJ A 8000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NOJ B 8001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZJA RELATED DB: PDB REMARK 900 MUTB IN COMPLEX WITH TRIS (P1-FORM) REMARK 900 RELATED ID: 1ZJB RELATED DB: PDB REMARK 900 MUTB IN COMPLEX WITH TRIS (P21-FORM) DBREF 2PWD A 1 557 UNP Q2PS28 Q2PS28_9PSED 28 584 DBREF 2PWD B 1 557 UNP Q2PS28 Q2PS28_9PSED 28 584 SEQRES 1 A 557 LYS PRO GLY ALA PRO TRP TRP LYS SER ALA VAL PHE TYR SEQRES 2 A 557 GLN VAL TYR PRO ARG SER PHE LYS ASP THR ASN GLY ASP SEQRES 3 A 557 GLY ILE GLY ASP PHE LYS GLY LEU THR GLU LYS LEU ASP SEQRES 4 A 557 TYR LEU LYS GLY LEU GLY ILE ASP ALA ILE TRP ILE ASN SEQRES 5 A 557 PRO HIS TYR ALA SER PRO ASN THR ASP ASN GLY TYR ASP SEQRES 6 A 557 ILE SER ASP TYR ARG GLU VAL MET LYS GLU TYR GLY THR SEQRES 7 A 557 MET GLU ASP PHE ASP ARG LEU MET ALA GLU LEU LYS LYS SEQRES 8 A 557 ARG GLY MET ARG LEU MET VAL ASP VAL VAL ILE ASN HIS SEQRES 9 A 557 SER SER ASP GLN HIS GLU TRP PHE LYS SER SER ARG ALA SEQRES 10 A 557 SER LYS ASP ASN PRO TYR ARG ASP TYR TYR PHE TRP ARG SEQRES 11 A 557 ASP GLY LYS ASP GLY HIS GLU PRO ASN ASN TYR PRO SER SEQRES 12 A 557 PHE PHE GLY GLY SER ALA TRP GLU LYS ASP PRO VAL THR SEQRES 13 A 557 GLY GLN TYR TYR LEU HIS TYR PHE GLY ARG GLN GLN PRO SEQRES 14 A 557 ASP LEU ASN TRP ASP THR PRO LYS LEU ARG GLU GLU LEU SEQRES 15 A 557 TYR ALA MET LEU ARG PHE TRP LEU ASP LYS GLY VAL SER SEQRES 16 A 557 GLY MET ARG PHE ASP THR VAL ALA THR TYR SER LYS THR SEQRES 17 A 557 PRO GLY PHE PRO ASP LEU THR PRO GLU GLN MET LYS ASN SEQRES 18 A 557 PHE ALA GLU ALA TYR THR GLN GLY PRO ASN LEU HIS ARG SEQRES 19 A 557 TYR LEU GLN GLU MET HIS GLU LYS VAL PHE ASP HIS TYR SEQRES 20 A 557 ASP ALA VAL THR ALA GLY GLU ILE PHE GLY ALA PRO LEU SEQRES 21 A 557 ASN GLN VAL PRO LEU PHE ILE ASP SER ARG ARG LYS GLU SEQRES 22 A 557 LEU ASP MET ALA PHE THR PHE ASP LEU ILE ARG TYR ASP SEQRES 23 A 557 ARG ALA LEU ASP ARG TRP HIS THR ILE PRO ARG THR LEU SEQRES 24 A 557 ALA ASP PHE ARG GLN THR ILE ASP LYS VAL ASP ALA ILE SEQRES 25 A 557 ALA GLY GLU TYR GLY TRP ASN THR PHE PHE LEU GLY ASN SEQRES 26 A 557 HIS ASP ASN PRO ARG ALA VAL SER HIS PHE GLY ASP ASP SEQRES 27 A 557 ARG PRO GLN TRP ARG GLU ALA SER ALA LYS ALA LEU ALA SEQRES 28 A 557 THR VAL THR LEU THR GLN ARG GLY THR PRO PHE ILE PHE SEQRES 29 A 557 GLN GLY ASP GLU LEU GLY MET THR ASN TYR PRO PHE LYS SEQRES 30 A 557 THR LEU GLN ASP PHE ASP ASP ILE GLU VAL LYS GLY PHE SEQRES 31 A 557 PHE GLN ASP TYR VAL GLU THR GLY LYS ALA THR ALA GLU SEQRES 32 A 557 GLU LEU LEU THR ASN VAL ALA LEU THR SER ARG ASP ASN SEQRES 33 A 557 ALA ARG THR PRO PHE GLN TRP ASP ASP SER ALA ASN ALA SEQRES 34 A 557 GLY PHE THR THR GLY LYS PRO TRP LEU LYS VAL ASN PRO SEQRES 35 A 557 ASN TYR THR GLU ILE ASN ALA ALA ARG GLU ILE GLY ASP SEQRES 36 A 557 PRO LYS SER VAL TYR SER PHE TYR ARG ASN LEU ILE SER SEQRES 37 A 557 ILE ARG HIS GLU THR PRO ALA LEU SER THR GLY SER TYR SEQRES 38 A 557 ARG ASP ILE ASP PRO SER ASN ALA ASP VAL TYR ALA TYR SEQRES 39 A 557 THR ARG SER GLN ASP GLY GLU THR TYR LEU VAL VAL VAL SEQRES 40 A 557 ASN PHE LYS ALA GLU PRO ARG SER PHE THR LEU PRO ASP SEQRES 41 A 557 GLY MET HIS ILE ALA GLU THR LEU ILE GLU SER SER SER SEQRES 42 A 557 PRO ALA ALA PRO ALA ALA GLY ALA ALA SER LEU GLU LEU SEQRES 43 A 557 GLN PRO TRP GLN SER GLY ILE TYR LYS VAL LYS SEQRES 1 B 557 LYS PRO GLY ALA PRO TRP TRP LYS SER ALA VAL PHE TYR SEQRES 2 B 557 GLN VAL TYR PRO ARG SER PHE LYS ASP THR ASN GLY ASP SEQRES 3 B 557 GLY ILE GLY ASP PHE LYS GLY LEU THR GLU LYS LEU ASP SEQRES 4 B 557 TYR LEU LYS GLY LEU GLY ILE ASP ALA ILE TRP ILE ASN SEQRES 5 B 557 PRO HIS TYR ALA SER PRO ASN THR ASP ASN GLY TYR ASP SEQRES 6 B 557 ILE SER ASP TYR ARG GLU VAL MET LYS GLU TYR GLY THR SEQRES 7 B 557 MET GLU ASP PHE ASP ARG LEU MET ALA GLU LEU LYS LYS SEQRES 8 B 557 ARG GLY MET ARG LEU MET VAL ASP VAL VAL ILE ASN HIS SEQRES 9 B 557 SER SER ASP GLN HIS GLU TRP PHE LYS SER SER ARG ALA SEQRES 10 B 557 SER LYS ASP ASN PRO TYR ARG ASP TYR TYR PHE TRP ARG SEQRES 11 B 557 ASP GLY LYS ASP GLY HIS GLU PRO ASN ASN TYR PRO SER SEQRES 12 B 557 PHE PHE GLY GLY SER ALA TRP GLU LYS ASP PRO VAL THR SEQRES 13 B 557 GLY GLN TYR TYR LEU HIS TYR PHE GLY ARG GLN GLN PRO SEQRES 14 B 557 ASP LEU ASN TRP ASP THR PRO LYS LEU ARG GLU GLU LEU SEQRES 15 B 557 TYR ALA MET LEU ARG PHE TRP LEU ASP LYS GLY VAL SER SEQRES 16 B 557 GLY MET ARG PHE ASP THR VAL ALA THR TYR SER LYS THR SEQRES 17 B 557 PRO GLY PHE PRO ASP LEU THR PRO GLU GLN MET LYS ASN SEQRES 18 B 557 PHE ALA GLU ALA TYR THR GLN GLY PRO ASN LEU HIS ARG SEQRES 19 B 557 TYR LEU GLN GLU MET HIS GLU LYS VAL PHE ASP HIS TYR SEQRES 20 B 557 ASP ALA VAL THR ALA GLY GLU ILE PHE GLY ALA PRO LEU SEQRES 21 B 557 ASN GLN VAL PRO LEU PHE ILE ASP SER ARG ARG LYS GLU SEQRES 22 B 557 LEU ASP MET ALA PHE THR PHE ASP LEU ILE ARG TYR ASP SEQRES 23 B 557 ARG ALA LEU ASP ARG TRP HIS THR ILE PRO ARG THR LEU SEQRES 24 B 557 ALA ASP PHE ARG GLN THR ILE ASP LYS VAL ASP ALA ILE SEQRES 25 B 557 ALA GLY GLU TYR GLY TRP ASN THR PHE PHE LEU GLY ASN SEQRES 26 B 557 HIS ASP ASN PRO ARG ALA VAL SER HIS PHE GLY ASP ASP SEQRES 27 B 557 ARG PRO GLN TRP ARG GLU ALA SER ALA LYS ALA LEU ALA SEQRES 28 B 557 THR VAL THR LEU THR GLN ARG GLY THR PRO PHE ILE PHE SEQRES 29 B 557 GLN GLY ASP GLU LEU GLY MET THR ASN TYR PRO PHE LYS SEQRES 30 B 557 THR LEU GLN ASP PHE ASP ASP ILE GLU VAL LYS GLY PHE SEQRES 31 B 557 PHE GLN ASP TYR VAL GLU THR GLY LYS ALA THR ALA GLU SEQRES 32 B 557 GLU LEU LEU THR ASN VAL ALA LEU THR SER ARG ASP ASN SEQRES 33 B 557 ALA ARG THR PRO PHE GLN TRP ASP ASP SER ALA ASN ALA SEQRES 34 B 557 GLY PHE THR THR GLY LYS PRO TRP LEU LYS VAL ASN PRO SEQRES 35 B 557 ASN TYR THR GLU ILE ASN ALA ALA ARG GLU ILE GLY ASP SEQRES 36 B 557 PRO LYS SER VAL TYR SER PHE TYR ARG ASN LEU ILE SER SEQRES 37 B 557 ILE ARG HIS GLU THR PRO ALA LEU SER THR GLY SER TYR SEQRES 38 B 557 ARG ASP ILE ASP PRO SER ASN ALA ASP VAL TYR ALA TYR SEQRES 39 B 557 THR ARG SER GLN ASP GLY GLU THR TYR LEU VAL VAL VAL SEQRES 40 B 557 ASN PHE LYS ALA GLU PRO ARG SER PHE THR LEU PRO ASP SEQRES 41 B 557 GLY MET HIS ILE ALA GLU THR LEU ILE GLU SER SER SER SEQRES 42 B 557 PRO ALA ALA PRO ALA ALA GLY ALA ALA SER LEU GLU LEU SEQRES 43 B 557 GLN PRO TRP GLN SER GLY ILE TYR LYS VAL LYS HET CA A7001 1 HET NOJ A8000 11 HET CA B7000 1 HET NOJ B8001 11 HETNAM CA CALCIUM ION HETNAM NOJ 1-DEOXYNOJIRIMYCIN HETSYN NOJ MORANOLINE FORMUL 3 CA 2(CA 2+) FORMUL 4 NOJ 2(C6 H13 N O4) FORMUL 7 HOH *1515(H2 O) HELIX 1 1 PRO A 5 ALA A 10 1 6 HELIX 2 2 TYR A 16 PHE A 20 5 5 HELIX 3 3 ASP A 30 LYS A 37 1 8 HELIX 4 4 LYS A 37 GLY A 45 1 9 HELIX 5 5 LYS A 74 GLY A 77 5 4 HELIX 6 6 THR A 78 ARG A 92 1 15 HELIX 7 7 HIS A 109 ARG A 116 1 8 HELIX 8 8 TYR A 123 TYR A 127 5 5 HELIX 9 9 THR A 175 ASP A 191 1 17 HELIX 10 10 THR A 201 TYR A 205 5 5 HELIX 11 11 THR A 215 ASN A 221 1 7 HELIX 12 12 ASN A 221 TYR A 226 1 6 HELIX 13 13 ASN A 231 VAL A 243 1 13 HELIX 14 14 PHE A 244 TYR A 247 5 4 HELIX 15 15 PRO A 259 ASN A 261 5 3 HELIX 16 16 GLN A 262 ASP A 268 1 7 HELIX 17 17 SER A 269 LYS A 272 5 4 HELIX 18 18 THR A 298 ALA A 313 1 16 HELIX 19 19 ARG A 330 PHE A 335 1 6 HELIX 20 20 TRP A 342 LEU A 355 1 14 HELIX 21 21 GLY A 366 GLY A 370 5 5 HELIX 22 22 THR A 378 PHE A 382 5 5 HELIX 23 23 ASP A 384 VAL A 395 1 12 HELIX 24 24 THR A 401 SER A 413 1 13 HELIX 25 25 ARG A 414 ARG A 418 5 5 HELIX 26 26 SER A 426 PHE A 431 5 6 HELIX 27 27 ASN A 441 GLU A 446 5 6 HELIX 28 28 ASN A 448 GLY A 454 1 7 HELIX 29 29 SER A 458 THR A 473 1 16 HELIX 30 30 PRO A 474 GLY A 479 1 6 HELIX 31 31 PRO B 5 SER B 9 5 5 HELIX 32 32 TYR B 16 PHE B 20 5 5 HELIX 33 33 ASP B 30 LYS B 37 1 8 HELIX 34 34 LYS B 37 GLY B 45 1 9 HELIX 35 35 LYS B 74 GLY B 77 5 4 HELIX 36 36 THR B 78 ARG B 92 1 15 HELIX 37 37 HIS B 109 SER B 118 1 10 HELIX 38 38 TYR B 123 TYR B 127 5 5 HELIX 39 39 THR B 175 ASP B 191 1 17 HELIX 40 40 THR B 201 TYR B 205 5 5 HELIX 41 41 THR B 215 ASN B 221 1 7 HELIX 42 42 ASN B 221 TYR B 226 1 6 HELIX 43 43 ASN B 231 VAL B 243 1 13 HELIX 44 44 PHE B 244 TYR B 247 5 4 HELIX 45 45 PRO B 259 ASN B 261 5 3 HELIX 46 46 GLN B 262 ASP B 268 1 7 HELIX 47 47 SER B 269 LYS B 272 5 4 HELIX 48 48 THR B 298 ALA B 313 1 16 HELIX 49 49 ARG B 330 GLY B 336 1 7 HELIX 50 50 TRP B 342 LEU B 355 1 14 HELIX 51 51 GLY B 366 GLY B 370 5 5 HELIX 52 52 THR B 378 PHE B 382 5 5 HELIX 53 53 ASP B 384 VAL B 395 1 12 HELIX 54 54 THR B 401 SER B 413 1 13 HELIX 55 55 ARG B 414 ARG B 418 5 5 HELIX 56 56 SER B 426 PHE B 431 5 6 HELIX 57 57 ASN B 441 GLU B 446 5 6 HELIX 58 58 ASN B 448 GLY B 454 1 7 HELIX 59 59 SER B 458 THR B 473 1 16 HELIX 60 60 PRO B 474 GLY B 479 1 6 SHEET 1 A 8 MET A 276 PHE A 278 0 SHEET 2 A 8 VAL A 250 GLU A 254 1 N GLY A 253 O PHE A 278 SHEET 3 A 8 GLY A 196 PHE A 199 1 N PHE A 199 O ALA A 252 SHEET 4 A 8 ARG A 95 VAL A 100 1 N VAL A 100 O ARG A 198 SHEET 5 A 8 ALA A 48 ILE A 51 1 N ILE A 49 O MET A 97 SHEET 6 A 8 PHE A 12 VAL A 15 1 N VAL A 15 O TRP A 50 SHEET 7 A 8 THR A 360 PHE A 364 1 O ILE A 363 N GLN A 14 SHEET 8 A 8 THR A 320 PHE A 321 1 N PHE A 321 O THR A 360 SHEET 1 B 2 TYR A 55 ALA A 56 0 SHEET 2 B 2 ASP A 68 VAL A 72 -1 O GLU A 71 N ALA A 56 SHEET 1 C 3 TRP A 129 ARG A 130 0 SHEET 2 C 3 TYR A 159 LEU A 161 -1 O TYR A 159 N ARG A 130 SHEET 3 C 3 TRP A 150 LYS A 152 -1 N GLU A 151 O TYR A 160 SHEET 1 D 5 SER A 480 ASP A 483 0 SHEET 2 D 5 VAL A 491 GLN A 498 -1 O SER A 497 N SER A 480 SHEET 3 D 5 GLU A 501 ASN A 508 -1 O TYR A 503 N ARG A 496 SHEET 4 D 5 SER A 551 VAL A 556 -1 O TYR A 554 N LEU A 504 SHEET 5 D 5 ILE A 524 SER A 531 -1 N ALA A 525 O LYS A 555 SHEET 1 E 2 ARG A 514 THR A 517 0 SHEET 2 E 2 SER A 543 LEU A 546 -1 O LEU A 546 N ARG A 514 SHEET 1 F 8 MET B 276 PHE B 278 0 SHEET 2 F 8 VAL B 250 GLU B 254 1 N GLY B 253 O PHE B 278 SHEET 3 F 8 GLY B 196 PHE B 199 1 N PHE B 199 O ALA B 252 SHEET 4 F 8 ARG B 95 VAL B 100 1 N VAL B 100 O ARG B 198 SHEET 5 F 8 ALA B 48 ILE B 51 1 N ILE B 49 O MET B 97 SHEET 6 F 8 PHE B 12 VAL B 15 1 N VAL B 15 O TRP B 50 SHEET 7 F 8 THR B 360 PHE B 364 1 O ILE B 363 N GLN B 14 SHEET 8 F 8 THR B 320 PHE B 321 1 N PHE B 321 O PHE B 362 SHEET 1 G 2 TYR B 55 ALA B 56 0 SHEET 2 G 2 ASP B 68 VAL B 72 -1 O GLU B 71 N ALA B 56 SHEET 1 H 3 TRP B 129 ARG B 130 0 SHEET 2 H 3 TYR B 159 LEU B 161 -1 O TYR B 159 N ARG B 130 SHEET 3 H 3 TRP B 150 LYS B 152 -1 N GLU B 151 O TYR B 160 SHEET 1 I 5 SER B 480 ASP B 483 0 SHEET 2 I 5 VAL B 491 GLN B 498 -1 O SER B 497 N SER B 480 SHEET 3 I 5 GLU B 501 ASN B 508 -1 O VAL B 507 N TYR B 492 SHEET 4 I 5 SER B 551 VAL B 556 -1 O TYR B 554 N LEU B 504 SHEET 5 I 5 ILE B 524 SER B 531 -1 N ALA B 525 O LYS B 555 SHEET 1 J 2 ARG B 514 THR B 517 0 SHEET 2 J 2 SER B 543 LEU B 546 -1 O LEU B 546 N ARG B 514 LINK OD1 ASP A 22 CA CA A7001 1555 1555 2.21 LINK OD1 ASN A 24 CA CA A7001 1555 1555 2.19 LINK OD1 ASP A 26 CA CA A7001 1555 1555 2.45 LINK O ILE A 28 CA CA A7001 1555 1555 2.33 LINK OD2 ASP A 30 CA CA A7001 1555 1555 2.25 LINK O HOH A4531 CA CA A7001 1555 1555 2.40 LINK O HOH A4715 CA CA A7001 1555 1555 2.47 LINK OD1 ASP B 22 CA CA B7000 1555 1555 2.20 LINK OD1 ASN B 24 CA CA B7000 1555 1555 2.30 LINK OD1 ASP B 26 CA CA B7000 1555 1555 2.46 LINK O ILE B 28 CA CA B7000 1555 1555 2.33 LINK OD2 ASP B 30 CA CA B7000 1555 1555 2.29 LINK O HOH B4097 CA CA B7000 1555 1555 2.53 LINK O HOH B4405 CA CA B7000 1555 1555 2.22 CISPEP 1 LYS A 1 PRO A 2 0 0.04 SITE 1 AC1 7 ASP B 22 ASN B 24 ASP B 26 ILE B 28 SITE 2 AC1 7 ASP B 30 HOH B4097 HOH B4405 SITE 1 AC2 7 ASP A 22 ASN A 24 ASP A 26 ILE A 28 SITE 2 AC2 7 ASP A 30 HOH A4531 HOH A4715 SITE 1 AC3 13 ASP A 61 TYR A 64 HIS A 104 PHE A 145 SITE 2 AC3 13 PHE A 164 ARG A 198 ASP A 200 GLU A 254 SITE 3 AC3 13 HIS A 326 ASP A 327 ARG A 414 HOH A4019 SITE 4 AC3 13 HOH A5420 SITE 1 AC4 12 ASP B 61 TYR B 64 HIS B 104 PHE B 145 SITE 2 AC4 12 PHE B 164 ARG B 198 ASP B 200 GLU B 254 SITE 3 AC4 12 HIS B 326 ASP B 327 ARG B 414 HOH B4034 CRYST1 63.400 72.000 82.000 67.20 73.40 70.90 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015773 -0.005462 -0.003096 0.00000 SCALE2 0.000000 0.014698 -0.005046 0.00000 SCALE3 0.000000 0.000000 0.013454 0.00000