HEADER TRANSFERASE 11-MAY-07 2PWP TITLE CRYSTAL STRUCTURE OF SPERMIDINE SYNTHASE FROM PLASMODIUM FALCIPARUM IN TITLE 2 COMPLEX WITH SPERMIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPERMIDINE SYNTHASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 40-321; COMPND 5 EC: 2.5.1.16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PF11_0301; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-(DE3)-ROSETTA OXFORD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-LIC KEYWDS TRANSFERASE, SPERMIDINE SYNTHASE, SPERMIDINE, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR W.QIU,A.DONG,H.REN,H.WU,Y.ZHAO,M.SCHAPIRA,G.WASNEY,M.VEDADI,J.LEW, AUTHOR 2 I.KOZIERADZKI,A.M.EDWARDS,C.H.ARROWSMITH,J.WEIGELT,M.SUNDSTROM, AUTHOR 3 A.N.PLOTNIKOV,A.BOCHKAREV,R.HUI,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 30-AUG-23 2PWP 1 REMARK REVDAT 3 13-JUL-11 2PWP 1 VERSN REVDAT 2 24-FEB-09 2PWP 1 VERSN REVDAT 1 22-MAY-07 2PWP 0 JRNL AUTH W.QIU,A.DONG,H.REN,H.WU,Y.ZHAO,M.SCHAPIRA,G.WASNEY,M.VEDADI, JRNL AUTH 2 J.LEW,I.KOZIERADZKI,A.M.EDWARDS,C.H.ARROWSMITH,J.WEIGELT, JRNL AUTH 3 M.SUNDSTROM,A.N.PLOTNIKOV,A.BOCHKAREV,R.HUI JRNL TITL CRYSTAL STRUCTURE OF SPERMIDINE SYNTHASE FROM PLASMODIUM JRNL TITL 2 FALCIPARUM IN COMPLEX WITH SPERMIDINE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 74726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3765 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3460 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6696 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.63000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 1.99000 REMARK 3 B13 (A**2) : 3.01000 REMARK 3 B23 (A**2) : -0.89000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.005 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 0.692 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ;11.318 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 0.057 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; 0.003 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.65000 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2HTE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V PEG3350, 0.1M AMMONIUM REMARK 280 SULFATE, 0.1M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 99.48450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.24900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 99.48450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 67.24900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -4.99021 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.45471 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 518 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER B 1 REMARK 465 ILE B 162 REMARK 465 GLY B 163 REMARK 465 PRO B 164 REMARK 465 ALA B 165 REMARK 465 GLU B 166 REMARK 465 THR B 167 REMARK 465 LEU B 168 REMARK 465 PHE B 169 REMARK 465 SER C 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 23 CE NZ REMARK 470 LYS B 3 CD CE NZ REMARK 470 LYS B 142 NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 29 NZ REMARK 480 LYS B 31 CG CD CE NZ REMARK 480 LYS B 76 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 145.97 -172.76 REMARK 500 SER A 159 150.42 80.31 REMARK 500 LEU A 211 -53.25 -128.50 REMARK 500 TYR A 259 -66.14 -131.63 REMARK 500 ASP B 157 62.98 -101.80 REMARK 500 SER B 159 -78.49 -63.78 REMARK 500 TYR B 259 -60.82 -134.04 REMARK 500 LYS C 23 138.87 -170.28 REMARK 500 TYR C 26 134.04 -178.39 REMARK 500 PHE C 169 57.85 -107.91 REMARK 500 CYS C 227 -0.23 76.35 REMARK 500 TYR C 259 -60.66 -134.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 157 SER A 158 -142.57 REMARK 500 ILE A 279 GLU A 280 142.62 REMARK 500 ASP B 160 PRO B 161 144.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPD C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HTE RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH 5'-METHYLTHIOADENOSINE REMARK 900 RELATED ID: 2I7C RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH AN INHIBITOR, ADODATO DBREF 2PWP A 1 282 UNP Q8II73 Q8II73_PLAF7 40 321 DBREF 2PWP B 1 282 UNP Q8II73 Q8II73_PLAF7 40 321 DBREF 2PWP C 1 282 UNP Q8II73 Q8II73_PLAF7 40 321 SEQRES 1 A 282 SER LYS LYS TRP PHE SER GLU PHE SER ILE MET TRP PRO SEQRES 2 A 282 GLY GLN ALA PHE SER LEU LYS ILE LYS LYS ILE LEU TYR SEQRES 3 A 282 GLU THR LYS SER LYS TYR GLN ASN VAL LEU VAL PHE GLU SEQRES 4 A 282 SER THR THR TYR GLY LYS VAL LEU VAL LEU ASP GLY VAL SEQRES 5 A 282 ILE GLN LEU THR GLU LYS ASP GLU PHE ALA TYR HIS GLU SEQRES 6 A 282 MET MET THR HIS VAL PRO MET THR VAL SER LYS GLU PRO SEQRES 7 A 282 LYS ASN VAL LEU VAL VAL GLY GLY GLY ASP GLY GLY ILE SEQRES 8 A 282 ILE ARG GLU LEU CYS LYS TYR LYS SER VAL GLU ASN ILE SEQRES 9 A 282 ASP ILE CYS GLU ILE ASP GLU THR VAL ILE GLU VAL SER SEQRES 10 A 282 LYS ILE TYR PHE LYS ASN ILE SER CYS GLY TYR GLU ASP SEQRES 11 A 282 LYS ARG VAL ASN VAL PHE ILE GLU ASP ALA SER LYS PHE SEQRES 12 A 282 LEU GLU ASN VAL THR ASN THR TYR ASP VAL ILE ILE VAL SEQRES 13 A 282 ASP SER SER ASP PRO ILE GLY PRO ALA GLU THR LEU PHE SEQRES 14 A 282 ASN GLN ASN PHE TYR GLU LYS ILE TYR ASN ALA LEU LYS SEQRES 15 A 282 PRO ASN GLY TYR CYS VAL ALA GLN CYS GLU SER LEU TRP SEQRES 16 A 282 ILE HIS VAL GLY THR ILE LYS ASN MET ILE GLY TYR ALA SEQRES 17 A 282 LYS LYS LEU PHE LYS LYS VAL GLU TYR ALA ASN ILE SER SEQRES 18 A 282 ILE PRO THR TYR PRO CYS GLY CYS ILE GLY ILE LEU CYS SEQRES 19 A 282 CYS SER LYS THR ASP THR GLY LEU THR LYS PRO ASN LYS SEQRES 20 A 282 LYS LEU GLU SER LYS GLU PHE ALA ASP LEU LYS TYR TYR SEQRES 21 A 282 ASN TYR GLU ASN HIS SER ALA ALA PHE LYS LEU PRO ALA SEQRES 22 A 282 PHE LEU LEU LYS GLU ILE GLU ASN ILE SEQRES 1 B 282 SER LYS LYS TRP PHE SER GLU PHE SER ILE MET TRP PRO SEQRES 2 B 282 GLY GLN ALA PHE SER LEU LYS ILE LYS LYS ILE LEU TYR SEQRES 3 B 282 GLU THR LYS SER LYS TYR GLN ASN VAL LEU VAL PHE GLU SEQRES 4 B 282 SER THR THR TYR GLY LYS VAL LEU VAL LEU ASP GLY VAL SEQRES 5 B 282 ILE GLN LEU THR GLU LYS ASP GLU PHE ALA TYR HIS GLU SEQRES 6 B 282 MET MET THR HIS VAL PRO MET THR VAL SER LYS GLU PRO SEQRES 7 B 282 LYS ASN VAL LEU VAL VAL GLY GLY GLY ASP GLY GLY ILE SEQRES 8 B 282 ILE ARG GLU LEU CYS LYS TYR LYS SER VAL GLU ASN ILE SEQRES 9 B 282 ASP ILE CYS GLU ILE ASP GLU THR VAL ILE GLU VAL SER SEQRES 10 B 282 LYS ILE TYR PHE LYS ASN ILE SER CYS GLY TYR GLU ASP SEQRES 11 B 282 LYS ARG VAL ASN VAL PHE ILE GLU ASP ALA SER LYS PHE SEQRES 12 B 282 LEU GLU ASN VAL THR ASN THR TYR ASP VAL ILE ILE VAL SEQRES 13 B 282 ASP SER SER ASP PRO ILE GLY PRO ALA GLU THR LEU PHE SEQRES 14 B 282 ASN GLN ASN PHE TYR GLU LYS ILE TYR ASN ALA LEU LYS SEQRES 15 B 282 PRO ASN GLY TYR CYS VAL ALA GLN CYS GLU SER LEU TRP SEQRES 16 B 282 ILE HIS VAL GLY THR ILE LYS ASN MET ILE GLY TYR ALA SEQRES 17 B 282 LYS LYS LEU PHE LYS LYS VAL GLU TYR ALA ASN ILE SER SEQRES 18 B 282 ILE PRO THR TYR PRO CYS GLY CYS ILE GLY ILE LEU CYS SEQRES 19 B 282 CYS SER LYS THR ASP THR GLY LEU THR LYS PRO ASN LYS SEQRES 20 B 282 LYS LEU GLU SER LYS GLU PHE ALA ASP LEU LYS TYR TYR SEQRES 21 B 282 ASN TYR GLU ASN HIS SER ALA ALA PHE LYS LEU PRO ALA SEQRES 22 B 282 PHE LEU LEU LYS GLU ILE GLU ASN ILE SEQRES 1 C 282 SER LYS LYS TRP PHE SER GLU PHE SER ILE MET TRP PRO SEQRES 2 C 282 GLY GLN ALA PHE SER LEU LYS ILE LYS LYS ILE LEU TYR SEQRES 3 C 282 GLU THR LYS SER LYS TYR GLN ASN VAL LEU VAL PHE GLU SEQRES 4 C 282 SER THR THR TYR GLY LYS VAL LEU VAL LEU ASP GLY VAL SEQRES 5 C 282 ILE GLN LEU THR GLU LYS ASP GLU PHE ALA TYR HIS GLU SEQRES 6 C 282 MET MET THR HIS VAL PRO MET THR VAL SER LYS GLU PRO SEQRES 7 C 282 LYS ASN VAL LEU VAL VAL GLY GLY GLY ASP GLY GLY ILE SEQRES 8 C 282 ILE ARG GLU LEU CYS LYS TYR LYS SER VAL GLU ASN ILE SEQRES 9 C 282 ASP ILE CYS GLU ILE ASP GLU THR VAL ILE GLU VAL SER SEQRES 10 C 282 LYS ILE TYR PHE LYS ASN ILE SER CYS GLY TYR GLU ASP SEQRES 11 C 282 LYS ARG VAL ASN VAL PHE ILE GLU ASP ALA SER LYS PHE SEQRES 12 C 282 LEU GLU ASN VAL THR ASN THR TYR ASP VAL ILE ILE VAL SEQRES 13 C 282 ASP SER SER ASP PRO ILE GLY PRO ALA GLU THR LEU PHE SEQRES 14 C 282 ASN GLN ASN PHE TYR GLU LYS ILE TYR ASN ALA LEU LYS SEQRES 15 C 282 PRO ASN GLY TYR CYS VAL ALA GLN CYS GLU SER LEU TRP SEQRES 16 C 282 ILE HIS VAL GLY THR ILE LYS ASN MET ILE GLY TYR ALA SEQRES 17 C 282 LYS LYS LEU PHE LYS LYS VAL GLU TYR ALA ASN ILE SER SEQRES 18 C 282 ILE PRO THR TYR PRO CYS GLY CYS ILE GLY ILE LEU CYS SEQRES 19 C 282 CYS SER LYS THR ASP THR GLY LEU THR LYS PRO ASN LYS SEQRES 20 C 282 LYS LEU GLU SER LYS GLU PHE ALA ASP LEU LYS TYR TYR SEQRES 21 C 282 ASN TYR GLU ASN HIS SER ALA ALA PHE LYS LEU PRO ALA SEQRES 22 C 282 PHE LEU LEU LYS GLU ILE GLU ASN ILE HET SPD A 401 10 HET GOL A 501 6 HET SPD B 401 10 HET SO4 B 601 5 HET GOL B 501 6 HET SPD C 401 10 HET GOL C 501 6 HETNAM SPD SPERMIDINE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN SPD N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE; PA(34) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 SPD 3(C7 H19 N3) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 7 SO4 O4 S 2- FORMUL 11 HOH *304(H2 O) HELIX 1 1 ASP A 59 THR A 73 1 15 HELIX 2 2 GLY A 89 CYS A 96 1 8 HELIX 3 3 ASP A 110 PHE A 121 1 12 HELIX 4 4 PHE A 121 CYS A 126 1 6 HELIX 5 5 GLY A 127 ASP A 130 5 4 HELIX 6 6 ASP A 139 VAL A 147 1 9 HELIX 7 7 GLY A 163 PHE A 169 5 7 HELIX 8 8 ASN A 170 ALA A 180 1 11 HELIX 9 9 HIS A 197 LYS A 210 1 14 HELIX 10 10 TYR A 225 CYS A 227 5 3 HELIX 11 11 ASN A 261 ALA A 268 1 8 HELIX 12 12 PRO A 272 ILE A 279 1 8 HELIX 13 13 ASP B 59 THR B 73 1 15 HELIX 14 14 GLY B 89 CYS B 96 1 8 HELIX 15 15 ASP B 110 PHE B 121 1 12 HELIX 16 16 PHE B 121 CYS B 126 1 6 HELIX 17 17 GLY B 127 ASP B 130 5 4 HELIX 18 18 ASP B 139 ASN B 146 1 8 HELIX 19 19 ASN B 170 ALA B 180 1 11 HELIX 20 20 HIS B 197 LYS B 210 1 14 HELIX 21 21 TYR B 225 CYS B 227 5 3 HELIX 22 22 SER B 251 ALA B 255 5 5 HELIX 23 23 ASN B 261 ALA B 268 1 8 HELIX 24 24 PRO B 272 GLU B 280 1 9 HELIX 25 25 ASP C 59 SER C 75 1 17 HELIX 26 26 GLY C 89 LYS C 97 1 9 HELIX 27 27 ASP C 110 PHE C 121 1 12 HELIX 28 28 PHE C 121 CYS C 126 1 6 HELIX 29 29 GLY C 127 ASP C 130 5 4 HELIX 30 30 ASP C 139 LEU C 144 1 6 HELIX 31 31 ALA C 165 PHE C 169 5 5 HELIX 32 32 ASN C 170 ALA C 180 1 11 HELIX 33 33 HIS C 197 PHE C 212 1 16 HELIX 34 34 TYR C 225 CYS C 227 5 3 HELIX 35 35 SER C 251 ALA C 255 5 5 HELIX 36 36 ASN C 261 ALA C 268 1 8 HELIX 37 37 PRO C 272 GLU C 280 1 9 SHEET 1 A 5 TRP A 4 GLU A 7 0 SHEET 2 A 5 PHE A 17 LYS A 29 -1 O LEU A 19 N PHE A 5 SHEET 3 A 5 ASN A 34 SER A 40 -1 O GLU A 39 N LYS A 23 SHEET 4 A 5 LYS A 45 LEU A 49 -1 O VAL A 48 N LEU A 36 SHEET 5 A 5 VAL A 52 THR A 56 -1 O GLN A 54 N LEU A 47 SHEET 1 B 7 VAL A 133 PHE A 136 0 SHEET 2 B 7 ASN A 103 CYS A 107 1 N ILE A 104 O ASN A 134 SHEET 3 B 7 ASN A 80 GLY A 85 1 N GLY A 85 O CYS A 107 SHEET 4 B 7 TYR A 151 ASP A 157 1 O ILE A 155 N LEU A 82 SHEET 5 B 7 LEU A 181 CYS A 191 1 O LYS A 182 N TYR A 151 SHEET 6 B 7 CYS A 229 SER A 236 -1 O LEU A 233 N ALA A 189 SHEET 7 B 7 LYS A 214 SER A 221 -1 N GLU A 216 O CYS A 234 SHEET 1 C 4 TRP B 4 GLU B 7 0 SHEET 2 C 4 GLN B 15 LYS B 29 -1 O LEU B 19 N PHE B 5 SHEET 3 C 4 GLN C 15 LYS C 29 -1 O ALA C 16 N SER B 18 SHEET 4 C 4 TRP C 4 GLU C 7 -1 N PHE C 5 O LEU C 19 SHEET 1 D 8 VAL B 52 THR B 56 0 SHEET 2 D 8 LYS B 45 LEU B 49 -1 N LEU B 47 O GLN B 54 SHEET 3 D 8 ASN B 34 SER B 40 -1 N LEU B 36 O VAL B 48 SHEET 4 D 8 GLN B 15 LYS B 29 -1 N THR B 28 O VAL B 35 SHEET 5 D 8 GLN C 15 LYS C 29 -1 O ALA C 16 N SER B 18 SHEET 6 D 8 ASN C 34 SER C 40 -1 O VAL C 35 N THR C 28 SHEET 7 D 8 LYS C 45 LEU C 49 -1 O VAL C 46 N PHE C 38 SHEET 8 D 8 VAL C 52 THR C 56 -1 O GLN C 54 N LEU C 47 SHEET 1 E 7 VAL B 133 PHE B 136 0 SHEET 2 E 7 ASN B 103 CYS B 107 1 N ILE B 106 O PHE B 136 SHEET 3 E 7 ASN B 80 VAL B 84 1 N VAL B 81 O ASP B 105 SHEET 4 E 7 TYR B 151 VAL B 156 1 O ILE B 155 N VAL B 84 SHEET 5 E 7 LEU B 181 CYS B 191 1 O VAL B 188 N VAL B 156 SHEET 6 E 7 CYS B 229 SER B 236 -1 O CYS B 235 N CYS B 187 SHEET 7 E 7 LYS B 214 SER B 221 -1 N GLU B 216 O CYS B 234 SHEET 1 F 7 VAL C 133 PHE C 136 0 SHEET 2 F 7 ASN C 103 CYS C 107 1 N ILE C 104 O ASN C 134 SHEET 3 F 7 ASN C 80 GLY C 85 1 N GLY C 85 O CYS C 107 SHEET 4 F 7 TYR C 151 ASP C 157 1 O ILE C 155 N LEU C 82 SHEET 5 F 7 LEU C 181 CYS C 191 1 O VAL C 188 N VAL C 156 SHEET 6 F 7 CYS C 229 SER C 236 -1 O CYS C 235 N CYS C 187 SHEET 7 F 7 LYS C 214 SER C 221 -1 N LYS C 214 O SER C 236 SITE 1 AC1 9 GLN A 54 TYR A 63 HIS A 64 ASP A 88 SITE 2 AC1 9 ASP A 157 ASP A 160 GLN A 190 TYR A 225 SITE 3 AC1 9 HOH A 520 SITE 1 AC2 10 ILE B 53 GLN B 54 TYR B 63 HIS B 64 SITE 2 AC2 10 ASP B 88 ASP B 157 GLN B 190 TYR B 225 SITE 3 AC2 10 PRO B 226 HOH B 602 SITE 1 AC3 11 ILE C 53 GLN C 54 TYR C 63 HIS C 64 SITE 2 AC3 11 ASP C 88 ASP C 157 SER C 158 ASP C 160 SITE 3 AC3 11 TYR C 225 HOH C 531 HOH C 568 SITE 1 AC4 5 HIS B 197 VAL B 198 GLY B 199 THR B 200 SITE 2 AC4 5 LYS B 252 SITE 1 AC5 4 LYS A 58 PHE A 61 TRP A 195 PHE A 274 SITE 1 AC6 5 TRP B 195 PHE B 274 HOH B 651 LYS C 58 SITE 2 AC6 5 LYS C 258 SITE 1 AC7 4 LYS B 58 TRP C 195 PHE C 274 HOH C 581 CRYST1 198.969 134.498 48.711 90.00 95.88 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005026 0.000000 0.000518 0.00000 SCALE2 0.000000 0.007435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020638 0.00000