HEADER TRANSFERASE 14-MAY-07 2PWY TITLE CRYSTAL STRUCTURE OF A M1A58 TRNA METHYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (ADENINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRNA(M1A58)-METHYLTRANSFERASE, TRNA(M1A58)MTASE; COMPND 5 EC: 2.1.1.36; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 GENE: TRMI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS MTASE, ADOMET, TRMI, TRNA-M1A58, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.BARRAUD,B.GOLINELLI-PIMPANEAU,C.TISNE REVDAT 6 30-AUG-23 2PWY 1 REMARK SEQADV REVDAT 5 13-JUL-11 2PWY 1 VERSN REVDAT 4 24-FEB-09 2PWY 1 VERSN REVDAT 3 25-MAR-08 2PWY 1 AUTHOR REVDAT 2 18-MAR-08 2PWY 1 JRNL REVDAT 1 26-FEB-08 2PWY 0 JRNL AUTH P.BARRAUD,B.GOLINELLI-PIMPANEAU,C.ATMANENE,S.SANGLIER, JRNL AUTH 2 A.VAN DORSSELAER,L.DROOGMANS,F.DARDEL,C.TISNE JRNL TITL CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TRNA M(1)A(58) JRNL TITL 2 METHYLTRANSFERASE AND BIOPHYSICAL CHARACTERIZATION OF ITS JRNL TITL 3 INTERACTION WITH TRNA. JRNL REF J.MOL.BIOL. V. 377 535 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18262540 JRNL DOI 10.1016/J.JMB.2008.01.041 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 67928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3448 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4709 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 265 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3823 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 421 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.414 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3990 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5438 ; 1.265 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 499 ; 6.101 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;34.122 ;22.515 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 603 ;12.016 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;16.324 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 605 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3034 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1737 ; 0.184 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2627 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 369 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 80 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.111 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2560 ; 0.664 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3950 ; 1.029 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1646 ; 1.812 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1488 ; 2.821 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4576 55.4638 -14.2142 REMARK 3 T TENSOR REMARK 3 T11: -0.0207 T22: -0.0359 REMARK 3 T33: -0.0005 T12: 0.0320 REMARK 3 T13: 0.0123 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.9373 L22: 1.7478 REMARK 3 L33: 0.9948 L12: -0.6064 REMARK 3 L13: 0.0926 L23: -0.2009 REMARK 3 S TENSOR REMARK 3 S11: 0.0676 S12: 0.0480 S13: 0.0472 REMARK 3 S21: -0.0396 S22: -0.0046 S23: 0.0066 REMARK 3 S31: 0.0289 S32: 0.0629 S33: -0.0630 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7369 33.3570 -14.8608 REMARK 3 T TENSOR REMARK 3 T11: -0.0087 T22: -0.0154 REMARK 3 T33: -0.0088 T12: 0.0085 REMARK 3 T13: -0.0073 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.4006 L22: 0.0822 REMARK 3 L33: 0.2787 L12: -0.0553 REMARK 3 L13: 0.1087 L23: 0.0032 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.0057 S13: 0.0522 REMARK 3 S21: 0.0028 S22: -0.0201 S23: -0.0137 REMARK 3 S31: 0.0018 S32: 0.0273 S33: 0.0197 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 60 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1263 2.1293 -12.8516 REMARK 3 T TENSOR REMARK 3 T11: -0.0558 T22: -0.0913 REMARK 3 T33: 0.0545 T12: 0.0534 REMARK 3 T13: -0.0240 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 2.5998 L22: 4.6072 REMARK 3 L33: 1.3558 L12: -1.5420 REMARK 3 L13: 0.6795 L23: 0.5378 REMARK 3 S TENSOR REMARK 3 S11: 0.0497 S12: 0.1072 S13: -0.0833 REMARK 3 S21: 0.0454 S22: -0.0802 S23: -0.0909 REMARK 3 S31: -0.0044 S32: -0.0987 S33: 0.0306 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 61 B 254 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0321 24.4115 -16.2147 REMARK 3 T TENSOR REMARK 3 T11: -0.0051 T22: -0.0174 REMARK 3 T33: -0.0107 T12: 0.0027 REMARK 3 T13: 0.0048 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.4365 L22: 0.0623 REMARK 3 L33: 0.3377 L12: -0.0043 REMARK 3 L13: -0.0723 L23: -0.1417 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: 0.0034 S13: -0.0370 REMARK 3 S21: -0.0058 S22: -0.0057 S23: 0.0058 REMARK 3 S31: 0.0314 S32: -0.0329 S33: 0.0115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PWY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042869. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67981 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.168 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : 0.10600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.67400 REMARK 200 R SYM FOR SHELL (I) : 0.67400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1I9G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 5% REMARK 280 ISOPROPANOL, 2 MM S-ADENOSYLHOMOCYSTEINE, 1.EQ TRNAIMET, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.29200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.29200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.22000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.39750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.22000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.39750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.29200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.22000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.39750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.29200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.22000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.39750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: TRANSLATION -X,Y,-Z+ REMARK 300 1/2 ; ROTATION 0,0,-1 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16050 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -70.29200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 TRP A 3 REMARK 465 PRO A 4 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 TRP B 3 REMARK 465 PRO B 4 REMARK 465 SER B 255 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 12 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 143 CG CD OE1 NE2 REMARK 470 MET A 172 CG SD CE REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 229 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 238 CG CD OE1 NE2 REMARK 470 ARG B 12 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 ARG B 15 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 28 CB CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 29 CB CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 30 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 31 CB CG CD CE NZ REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 ARG B 49 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 ARG B 60 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 129 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 143 CG CD OE1 NE2 REMARK 470 GLU B 145 CG CD OE1 OE2 REMARK 470 MET B 172 CG SD CE REMARK 470 GLU B 179 CG CD OE1 OE2 REMARK 470 ARG B 206 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 229 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 230 CG CD1 CD2 REMARK 470 PRO B 231 CB CG CD REMARK 470 GLN B 238 CG CD OE1 NE2 REMARK 470 LYS B 253 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 50 -138.52 -116.73 REMARK 500 SER A 73 -74.59 -106.08 REMARK 500 ALA A 233 106.74 -162.91 REMARK 500 THR A 243 -64.16 -121.91 REMARK 500 SER B 73 -89.41 -83.22 REMARK 500 ALA B 233 94.96 -165.65 REMARK 500 THR B 243 -62.30 -120.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 502 REMARK 999 REMARK 999 SEQUENCE REMARK 999 UNP Q8GBB2 HAS A CONFLICT AT RESIDUE 254, ALA TO GLY DBREF 2PWY A 1 255 UNP Q8GBB2 TRMI_THET2 1 255 DBREF 2PWY B 1 255 UNP Q8GBB2 TRMI_THET2 1 255 SEQADV 2PWY GLY A -2 UNP Q8GBB2 CLONING ARTIFACT SEQADV 2PWY SER A -1 UNP Q8GBB2 CLONING ARTIFACT SEQADV 2PWY HIS A 0 UNP Q8GBB2 CLONING ARTIFACT SEQADV 2PWY GLY A 254 UNP Q8GBB2 ALA 254 SEE REMARK 999 SEQADV 2PWY GLY B -2 UNP Q8GBB2 CLONING ARTIFACT SEQADV 2PWY SER B -1 UNP Q8GBB2 CLONING ARTIFACT SEQADV 2PWY HIS B 0 UNP Q8GBB2 CLONING ARTIFACT SEQADV 2PWY GLY B 254 UNP Q8GBB2 ALA 254 SEE REMARK 999 SEQRES 1 A 258 GLY SER HIS MET ALA TRP PRO GLY PRO LEU LEU LEU LYS SEQRES 2 A 258 ASP ARG LYS GLY ARG ALA TYR LEU VAL PHE PRO LYS GLU SEQRES 3 A 258 GLY GLY VAL PHE HIS HIS HIS LYS GLY SER VAL PRO HIS SEQRES 4 A 258 GLU ALA LEU LEU GLU ALA GLY PRO GLY GLY VAL VAL ARG SEQRES 5 A 258 THR HIS LEU GLY GLU GLU LEU SER VAL HIS ARG PRO THR SEQRES 6 A 258 LEU GLU GLU TYR LEU LEU HIS MET LYS ARG SER ALA THR SEQRES 7 A 258 PRO THR TYR PRO LYS ASP ALA SER ALA MET VAL THR LEU SEQRES 8 A 258 LEU ASP LEU ALA PRO GLY MET ARG VAL LEU GLU ALA GLY SEQRES 9 A 258 THR GLY SER GLY GLY LEU THR LEU PHE LEU ALA ARG ALA SEQRES 10 A 258 VAL GLY GLU LYS GLY LEU VAL GLU SER TYR GLU ALA ARG SEQRES 11 A 258 PRO HIS HIS LEU ALA GLN ALA GLU ARG ASN VAL ARG ALA SEQRES 12 A 258 PHE TRP GLN VAL GLU ASN VAL ARG PHE HIS LEU GLY LYS SEQRES 13 A 258 LEU GLU GLU ALA GLU LEU GLU GLU ALA ALA TYR ASP GLY SEQRES 14 A 258 VAL ALA LEU ASP LEU MET GLU PRO TRP LYS VAL LEU GLU SEQRES 15 A 258 LYS ALA ALA LEU ALA LEU LYS PRO ASP ARG PHE LEU VAL SEQRES 16 A 258 ALA TYR LEU PRO ASN ILE THR GLN VAL LEU GLU LEU VAL SEQRES 17 A 258 ARG ALA ALA GLU ALA HIS PRO PHE ARG LEU GLU ARG VAL SEQRES 18 A 258 LEU GLU VAL GLY TRP ARG GLU TRP GLU VAL ARG LEU PRO SEQRES 19 A 258 VAL ALA HIS PRO ARG PHE GLN GLN VAL GLY HIS THR ALA SEQRES 20 A 258 PHE LEU VAL ALA LEU ARG ARG TRP LYS GLY SER SEQRES 1 B 258 GLY SER HIS MET ALA TRP PRO GLY PRO LEU LEU LEU LYS SEQRES 2 B 258 ASP ARG LYS GLY ARG ALA TYR LEU VAL PHE PRO LYS GLU SEQRES 3 B 258 GLY GLY VAL PHE HIS HIS HIS LYS GLY SER VAL PRO HIS SEQRES 4 B 258 GLU ALA LEU LEU GLU ALA GLY PRO GLY GLY VAL VAL ARG SEQRES 5 B 258 THR HIS LEU GLY GLU GLU LEU SER VAL HIS ARG PRO THR SEQRES 6 B 258 LEU GLU GLU TYR LEU LEU HIS MET LYS ARG SER ALA THR SEQRES 7 B 258 PRO THR TYR PRO LYS ASP ALA SER ALA MET VAL THR LEU SEQRES 8 B 258 LEU ASP LEU ALA PRO GLY MET ARG VAL LEU GLU ALA GLY SEQRES 9 B 258 THR GLY SER GLY GLY LEU THR LEU PHE LEU ALA ARG ALA SEQRES 10 B 258 VAL GLY GLU LYS GLY LEU VAL GLU SER TYR GLU ALA ARG SEQRES 11 B 258 PRO HIS HIS LEU ALA GLN ALA GLU ARG ASN VAL ARG ALA SEQRES 12 B 258 PHE TRP GLN VAL GLU ASN VAL ARG PHE HIS LEU GLY LYS SEQRES 13 B 258 LEU GLU GLU ALA GLU LEU GLU GLU ALA ALA TYR ASP GLY SEQRES 14 B 258 VAL ALA LEU ASP LEU MET GLU PRO TRP LYS VAL LEU GLU SEQRES 15 B 258 LYS ALA ALA LEU ALA LEU LYS PRO ASP ARG PHE LEU VAL SEQRES 16 B 258 ALA TYR LEU PRO ASN ILE THR GLN VAL LEU GLU LEU VAL SEQRES 17 B 258 ARG ALA ALA GLU ALA HIS PRO PHE ARG LEU GLU ARG VAL SEQRES 18 B 258 LEU GLU VAL GLY TRP ARG GLU TRP GLU VAL ARG LEU PRO SEQRES 19 B 258 VAL ALA HIS PRO ARG PHE GLN GLN VAL GLY HIS THR ALA SEQRES 20 B 258 PHE LEU VAL ALA LEU ARG ARG TRP LYS GLY SER HET SO4 A 503 5 HET SO4 A 505 5 HET SAH A 501 26 HET SAH A 502 26 HET SO4 B 504 5 HETNAM SO4 SULFATE ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 SAH 2(C14 H20 N6 O5 S) FORMUL 8 HOH *421(H2 O) HELIX 1 1 HIS A 36 GLY A 43 1 8 HELIX 2 2 THR A 62 MET A 70 1 9 HELIX 3 3 TYR A 78 LEU A 89 1 12 HELIX 4 4 GLY A 105 GLY A 116 1 12 HELIX 5 5 ARG A 127 TRP A 142 1 16 HELIX 6 6 LYS A 153 ALA A 157 5 5 HELIX 7 7 GLU A 173 LYS A 176 5 4 HELIX 8 8 VAL A 177 ALA A 184 1 8 HELIX 9 9 ASN A 197 GLU A 209 1 13 HELIX 10 10 HIS B 36 GLY B 43 1 8 HELIX 11 11 THR B 62 MET B 70 1 9 HELIX 12 12 TYR B 78 LEU B 89 1 12 HELIX 13 13 GLY B 105 GLY B 116 1 12 HELIX 14 14 ARG B 127 TRP B 142 1 16 HELIX 15 15 LYS B 153 ALA B 157 5 5 HELIX 16 16 GLU B 173 LYS B 176 5 4 HELIX 17 17 VAL B 177 ALA B 184 1 8 HELIX 18 18 ASN B 197 ALA B 208 1 12 HELIX 19 19 GLU B 209 HIS B 211 5 3 SHEET 1 A 4 ALA A 16 VAL A 19 0 SHEET 2 A 4 LEU A 7 LYS A 10 -1 N LEU A 7 O VAL A 19 SHEET 3 A 4 GLU A 55 HIS A 59 -1 O SER A 57 N LYS A 10 SHEET 4 A 4 VAL A 47 ARG A 49 -1 N VAL A 48 O LEU A 56 SHEET 1 B 2 VAL A 26 PHE A 27 0 SHEET 2 B 2 VAL A 34 PRO A 35 -1 O VAL A 34 N PHE A 27 SHEET 1 C14 VAL A 147 LEU A 151 0 SHEET 2 C14 LEU A 120 GLU A 125 1 N VAL A 121 O ARG A 148 SHEET 3 C14 ARG A 96 ALA A 100 1 N VAL A 97 O LEU A 120 SHEET 4 C14 TYR A 164 ASP A 170 1 O ALA A 168 N LEU A 98 SHEET 5 C14 LEU A 185 LEU A 195 1 O VAL A 192 N LEU A 169 SHEET 6 C14 PHE A 245 ARG A 251 -1 O PHE A 245 N LEU A 195 SHEET 7 C14 PHE A 213 ARG A 229 -1 N ARG A 214 O ARG A 250 SHEET 8 C14 PHE B 213 ARG B 229 -1 O TRP B 226 N VAL A 218 SHEET 9 C14 PHE B 245 ARG B 251 -1 O ALA B 248 N GLU B 216 SHEET 10 C14 LEU B 185 LEU B 195 -1 N LEU B 195 O PHE B 245 SHEET 11 C14 TYR B 164 ASP B 170 1 N LEU B 169 O VAL B 192 SHEET 12 C14 ARG B 96 ALA B 100 1 N LEU B 98 O ALA B 168 SHEET 13 C14 LEU B 120 GLU B 125 1 O TYR B 124 N GLU B 99 SHEET 14 C14 VAL B 147 LEU B 151 1 O ARG B 148 N VAL B 121 SHEET 1 D 4 VAL A 232 PRO A 235 0 SHEET 2 D 4 PHE A 213 ARG A 229 -1 N GLU A 227 O HIS A 234 SHEET 3 D 4 PHE B 213 ARG B 229 -1 O TRP B 226 N VAL A 218 SHEET 4 D 4 VAL B 232 PRO B 235 -1 O HIS B 234 N GLU B 227 SHEET 1 E 4 ALA B 16 VAL B 19 0 SHEET 2 E 4 LEU B 7 LYS B 10 -1 N LEU B 7 O VAL B 19 SHEET 3 E 4 GLU B 55 HIS B 59 -1 O HIS B 59 N LEU B 8 SHEET 4 E 4 VAL B 47 ARG B 49 -1 N VAL B 48 O LEU B 56 SHEET 1 F 2 VAL B 26 HIS B 29 0 SHEET 2 F 2 GLY B 32 PRO B 35 -1 O GLY B 32 N HIS B 29 CISPEP 1 ALA A 100 GLY A 101 0 -7.03 CISPEP 2 LEU A 230 PRO A 231 0 7.39 CISPEP 3 ALA B 100 GLY B 101 0 -8.95 CISPEP 4 LEU B 230 PRO B 231 0 11.61 SITE 1 AC1 8 HIS A 51 LEU A 52 PHE A 213 ARG A 214 SITE 2 AC1 8 LEU A 215 HOH A 532 HOH A 655 HOH A 747 SITE 1 AC2 4 HIS B 51 ARG B 251 GLY B 254 HOH B 546 SITE 1 AC3 7 ARG A 49 ARG A 214 GLU A 216 ARG A 250 SITE 2 AC3 7 LYS B 10 SER B 57 HIS B 59 SITE 1 AC4 24 THR A 75 PRO A 76 THR A 77 GLY A 101 SITE 2 AC4 24 THR A 102 GLY A 103 SER A 104 GLY A 105 SITE 3 AC4 24 GLY A 106 LEU A 107 GLU A 125 ALA A 126 SITE 4 AC4 24 ARG A 127 HIS A 130 GLY A 152 LYS A 153 SITE 5 AC4 24 LEU A 154 GLU A 155 ASP A 170 LEU A 171 SITE 6 AC4 24 HOH A 509 HOH A 552 HOH A 630 HOH A 647 SITE 1 AC5 24 ALA B 74 THR B 75 PRO B 76 THR B 77 SITE 2 AC5 24 GLY B 101 THR B 102 GLY B 103 SER B 104 SITE 3 AC5 24 GLY B 105 GLY B 106 LEU B 107 GLU B 125 SITE 4 AC5 24 ALA B 126 ARG B 127 HIS B 130 GLY B 152 SITE 5 AC5 24 LYS B 153 LEU B 154 GLU B 155 ASP B 170 SITE 6 AC5 24 LEU B 171 HOH B 505 HOH B 506 HOH B 527 CRYST1 90.440 96.795 140.584 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011057 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007113 0.00000