HEADER CHAPERONE 15-MAY-07 2PY8 TITLE RBCX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN RBCX; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 STRAIN: PCC6803; SOURCE 5 GENE: RBCX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS ALL HELICAL FOLD, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR S.TANAKA,M.R.SAWAYA,C.A.KERFELD,T.O.YEATES REVDAT 5 21-FEB-24 2PY8 1 REMARK SEQADV REVDAT 4 18-OCT-17 2PY8 1 REMARK REVDAT 3 13-JUL-11 2PY8 1 VERSN REVDAT 2 24-FEB-09 2PY8 1 VERSN REVDAT 1 09-OCT-07 2PY8 0 JRNL AUTH S.TANAKA,M.R.SAWAYA,C.A.KERFELD,T.O.YEATES JRNL TITL STRUCTURE OF THE RUBISCO CHAPERONE RBCX FROM SYNECHOCYSTIS JRNL TITL 2 SP. PCC6803. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 1109 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17881829 JRNL DOI 10.1107/S090744490704228X REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1495 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1995 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 62.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.286 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.571 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3792 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2542 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5131 ; 1.137 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6225 ; 0.878 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 456 ; 4.132 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;36.812 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 671 ;17.087 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;12.588 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 609 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4118 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 712 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 967 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2419 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1832 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2013 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 112 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 97 ; 0.226 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2498 ; 3.677 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 914 ; 1.047 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3727 ; 4.739 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1582 ; 3.821 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1404 ; 5.366 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 47.5860 41.2290 48.2350 REMARK 3 T TENSOR REMARK 3 T11: -0.1963 T22: -0.2172 REMARK 3 T33: -0.4050 T12: -0.0251 REMARK 3 T13: 0.0286 T23: -0.0891 REMARK 3 L TENSOR REMARK 3 L11: 2.6217 L22: 2.5295 REMARK 3 L33: 5.3267 L12: -2.3533 REMARK 3 L13: -3.7291 L23: 3.2501 REMARK 3 S TENSOR REMARK 3 S11: -0.3804 S12: 0.0851 S13: -0.1723 REMARK 3 S21: 0.5329 S22: 0.1989 S23: 0.0420 REMARK 3 S31: 0.6128 S32: 0.3655 S33: 0.1815 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 115 REMARK 3 ORIGIN FOR THE GROUP (A): 39.9620 91.2230 61.0160 REMARK 3 T TENSOR REMARK 3 T11: -0.3124 T22: -0.1179 REMARK 3 T33: -0.3982 T12: 0.0777 REMARK 3 T13: 0.0553 T23: 0.0609 REMARK 3 L TENSOR REMARK 3 L11: 6.4833 L22: 1.2008 REMARK 3 L33: 1.7335 L12: 0.7559 REMARK 3 L13: 1.2735 L23: -0.1003 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: 0.3221 S13: -0.4609 REMARK 3 S21: 0.0680 S22: 0.0906 S23: -0.0349 REMARK 3 S31: 0.1963 S32: 0.1317 S33: -0.0903 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 123 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6390 99.3340 61.8520 REMARK 3 T TENSOR REMARK 3 T11: -0.3133 T22: -0.1984 REMARK 3 T33: -0.3503 T12: 0.0823 REMARK 3 T13: 0.0127 T23: 0.0742 REMARK 3 L TENSOR REMARK 3 L11: 3.5076 L22: 0.9132 REMARK 3 L33: 1.2279 L12: 0.3762 REMARK 3 L13: 0.5340 L23: -0.0642 REMARK 3 S TENSOR REMARK 3 S11: -0.1424 S12: 0.4522 S13: 0.4116 REMARK 3 S21: 0.0642 S22: 0.0911 S23: 0.1434 REMARK 3 S31: -0.0833 S32: -0.0065 S33: 0.0513 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 104 REMARK 3 ORIGIN FOR THE GROUP (A): 51.1880 62.2550 42.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.2138 T22: -0.2289 REMARK 3 T33: -0.2430 T12: -0.1630 REMARK 3 T13: 0.3281 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 6.7978 L22: 5.9986 REMARK 3 L33: 10.5164 L12: -1.5683 REMARK 3 L13: 2.0540 L23: -1.2386 REMARK 3 S TENSOR REMARK 3 S11: 0.1954 S12: 0.1844 S13: 1.1206 REMARK 3 S21: -0.5790 S22: 0.2939 S23: -0.5265 REMARK 3 S31: -1.3151 S32: 0.1367 S33: -0.4893 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947,0.97969,0.97182 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29666 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 5.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1M POTASSIUM/SODIUM REMARK 280 PHOSPHATE, 0.2M LITHIUM SULFATE, PH 6.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.37100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 64.91600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 64.91600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.55650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 64.91600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 64.91600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.18550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 64.91600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.91600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.55650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 64.91600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.91600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.18550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.37100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE CHAIN B AND CHAIN C FORM A DIMER, AND THE CHAIN A AND REMARK 300 CHAIN D FORM ANOTHER DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 92.74200 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 92.74200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 618 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 122 REMARK 465 THR A 123 REMARK 465 SER A 124 REMARK 465 ASN A 125 REMARK 465 GLY A 126 REMARK 465 GLU A 127 REMARK 465 SER A 128 REMARK 465 ASN A 129 REMARK 465 ASN A 130 REMARK 465 ASN A 131 REMARK 465 ASP A 132 REMARK 465 SER A 133 REMARK 465 PRO A 134 REMARK 465 PRO A 135 REMARK 465 SER A 136 REMARK 465 ALA A 137 REMARK 465 ALA A 138 REMARK 465 ALA A 139 REMARK 465 LEU A 140 REMARK 465 GLU A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 MET B 1 REMARK 465 VAL B 116 REMARK 465 ASP B 117 REMARK 465 ASN B 118 REMARK 465 PHE B 119 REMARK 465 PRO B 120 REMARK 465 SER B 121 REMARK 465 GLU B 122 REMARK 465 THR B 123 REMARK 465 SER B 124 REMARK 465 ASN B 125 REMARK 465 GLY B 126 REMARK 465 GLU B 127 REMARK 465 SER B 128 REMARK 465 ASN B 129 REMARK 465 ASN B 130 REMARK 465 ASN B 131 REMARK 465 ASP B 132 REMARK 465 SER B 133 REMARK 465 PRO B 134 REMARK 465 PRO B 135 REMARK 465 SER B 136 REMARK 465 ALA B 137 REMARK 465 ALA B 138 REMARK 465 ALA B 139 REMARK 465 LEU B 140 REMARK 465 GLU B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 MET C 1 REMARK 465 ASN C 125 REMARK 465 GLY C 126 REMARK 465 GLU C 127 REMARK 465 SER C 128 REMARK 465 ASN C 129 REMARK 465 ASN C 130 REMARK 465 ASN C 131 REMARK 465 ASP C 132 REMARK 465 SER C 133 REMARK 465 PRO C 134 REMARK 465 PRO C 135 REMARK 465 SER C 136 REMARK 465 ALA C 137 REMARK 465 ALA C 138 REMARK 465 ALA C 139 REMARK 465 LEU C 140 REMARK 465 GLU C 141 REMARK 465 HIS C 142 REMARK 465 HIS C 143 REMARK 465 HIS C 144 REMARK 465 HIS C 145 REMARK 465 HIS C 146 REMARK 465 HIS C 147 REMARK 465 MET D 1 REMARK 465 LEU D 105 REMARK 465 LEU D 106 REMARK 465 GLU D 107 REMARK 465 ARG D 108 REMARK 465 LEU D 109 REMARK 465 THR D 110 REMARK 465 ARG D 111 REMARK 465 THR D 112 REMARK 465 VAL D 113 REMARK 465 ALA D 114 REMARK 465 GLU D 115 REMARK 465 VAL D 116 REMARK 465 ASP D 117 REMARK 465 ASN D 118 REMARK 465 PHE D 119 REMARK 465 PRO D 120 REMARK 465 SER D 121 REMARK 465 GLU D 122 REMARK 465 THR D 123 REMARK 465 SER D 124 REMARK 465 ASN D 125 REMARK 465 GLY D 126 REMARK 465 GLU D 127 REMARK 465 SER D 128 REMARK 465 ASN D 129 REMARK 465 ASN D 130 REMARK 465 ASN D 131 REMARK 465 ASP D 132 REMARK 465 SER D 133 REMARK 465 PRO D 134 REMARK 465 PRO D 135 REMARK 465 SER D 136 REMARK 465 ALA D 137 REMARK 465 ALA D 138 REMARK 465 ALA D 139 REMARK 465 LEU D 140 REMARK 465 GLU D 141 REMARK 465 HIS D 142 REMARK 465 HIS D 143 REMARK 465 HIS D 144 REMARK 465 HIS D 145 REMARK 465 HIS D 146 REMARK 465 HIS D 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 84 CG ASP B 84 OD2 0.171 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 34 71.83 -154.82 REMARK 500 ASN B 64 83.57 -153.45 REMARK 500 ASN C 34 72.32 -159.36 REMARK 500 LEU D 61 13.28 -69.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE4 B 602 REMARK 610 PE4 C 601 REMARK 610 PE4 D 603 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 D 603 DBREF 2PY8 A 1 136 UNP Q55670 Q55670_SYNY3 3 138 DBREF 2PY8 B 1 136 UNP Q55670 Q55670_SYNY3 3 138 DBREF 2PY8 C 1 136 UNP Q55670 Q55670_SYNY3 3 138 DBREF 2PY8 D 1 136 UNP Q55670 Q55670_SYNY3 3 138 SEQADV 2PY8 ALA A 137 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA A 138 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA A 139 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 LEU A 140 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 GLU A 141 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS A 142 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS A 143 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS A 144 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS A 145 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS A 146 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS A 147 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA B 137 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA B 138 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA B 139 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 LEU B 140 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 GLU B 141 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS B 142 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS B 143 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS B 144 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS B 145 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS B 146 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS B 147 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA C 137 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA C 138 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA C 139 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 LEU C 140 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 GLU C 141 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS C 142 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS C 143 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS C 144 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS C 145 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS C 146 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS C 147 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA D 137 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA D 138 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 ALA D 139 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 LEU D 140 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 GLU D 141 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS D 142 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS D 143 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS D 144 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS D 145 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS D 146 UNP Q55670 EXPRESSION TAG SEQADV 2PY8 HIS D 147 UNP Q55670 EXPRESSION TAG SEQRES 1 A 147 MET GLN THR LYS HIS ILE ALA GLN ALA THR VAL LYS VAL SEQRES 2 A 147 LEU GLN SER TYR LEU THR TYR GLN ALA VAL LEU ARG ILE SEQRES 3 A 147 GLN SER GLU LEU GLY GLU THR ASN PRO PRO GLN ALA ILE SEQRES 4 A 147 TRP LEU ASN GLN TYR LEU ALA SER HIS SER ILE GLN ASN SEQRES 5 A 147 GLY GLU THR PHE LEU THR GLU LEU LEU ASP GLU ASN LYS SEQRES 6 A 147 GLU LEU VAL LEU ARG ILE LEU ALA VAL ARG GLU ASP ILE SEQRES 7 A 147 ALA GLU SER VAL LEU ASP PHE LEU PRO GLY MET THR ARG SEQRES 8 A 147 ASN SER LEU ALA GLU SER ASN ILE ALA HIS ARG ARG HIS SEQRES 9 A 147 LEU LEU GLU ARG LEU THR ARG THR VAL ALA GLU VAL ASP SEQRES 10 A 147 ASN PHE PRO SER GLU THR SER ASN GLY GLU SER ASN ASN SEQRES 11 A 147 ASN ASP SER PRO PRO SER ALA ALA ALA LEU GLU HIS HIS SEQRES 12 A 147 HIS HIS HIS HIS SEQRES 1 B 147 MET GLN THR LYS HIS ILE ALA GLN ALA THR VAL LYS VAL SEQRES 2 B 147 LEU GLN SER TYR LEU THR TYR GLN ALA VAL LEU ARG ILE SEQRES 3 B 147 GLN SER GLU LEU GLY GLU THR ASN PRO PRO GLN ALA ILE SEQRES 4 B 147 TRP LEU ASN GLN TYR LEU ALA SER HIS SER ILE GLN ASN SEQRES 5 B 147 GLY GLU THR PHE LEU THR GLU LEU LEU ASP GLU ASN LYS SEQRES 6 B 147 GLU LEU VAL LEU ARG ILE LEU ALA VAL ARG GLU ASP ILE SEQRES 7 B 147 ALA GLU SER VAL LEU ASP PHE LEU PRO GLY MET THR ARG SEQRES 8 B 147 ASN SER LEU ALA GLU SER ASN ILE ALA HIS ARG ARG HIS SEQRES 9 B 147 LEU LEU GLU ARG LEU THR ARG THR VAL ALA GLU VAL ASP SEQRES 10 B 147 ASN PHE PRO SER GLU THR SER ASN GLY GLU SER ASN ASN SEQRES 11 B 147 ASN ASP SER PRO PRO SER ALA ALA ALA LEU GLU HIS HIS SEQRES 12 B 147 HIS HIS HIS HIS SEQRES 1 C 147 MET GLN THR LYS HIS ILE ALA GLN ALA THR VAL LYS VAL SEQRES 2 C 147 LEU GLN SER TYR LEU THR TYR GLN ALA VAL LEU ARG ILE SEQRES 3 C 147 GLN SER GLU LEU GLY GLU THR ASN PRO PRO GLN ALA ILE SEQRES 4 C 147 TRP LEU ASN GLN TYR LEU ALA SER HIS SER ILE GLN ASN SEQRES 5 C 147 GLY GLU THR PHE LEU THR GLU LEU LEU ASP GLU ASN LYS SEQRES 6 C 147 GLU LEU VAL LEU ARG ILE LEU ALA VAL ARG GLU ASP ILE SEQRES 7 C 147 ALA GLU SER VAL LEU ASP PHE LEU PRO GLY MET THR ARG SEQRES 8 C 147 ASN SER LEU ALA GLU SER ASN ILE ALA HIS ARG ARG HIS SEQRES 9 C 147 LEU LEU GLU ARG LEU THR ARG THR VAL ALA GLU VAL ASP SEQRES 10 C 147 ASN PHE PRO SER GLU THR SER ASN GLY GLU SER ASN ASN SEQRES 11 C 147 ASN ASP SER PRO PRO SER ALA ALA ALA LEU GLU HIS HIS SEQRES 12 C 147 HIS HIS HIS HIS SEQRES 1 D 147 MET GLN THR LYS HIS ILE ALA GLN ALA THR VAL LYS VAL SEQRES 2 D 147 LEU GLN SER TYR LEU THR TYR GLN ALA VAL LEU ARG ILE SEQRES 3 D 147 GLN SER GLU LEU GLY GLU THR ASN PRO PRO GLN ALA ILE SEQRES 4 D 147 TRP LEU ASN GLN TYR LEU ALA SER HIS SER ILE GLN ASN SEQRES 5 D 147 GLY GLU THR PHE LEU THR GLU LEU LEU ASP GLU ASN LYS SEQRES 6 D 147 GLU LEU VAL LEU ARG ILE LEU ALA VAL ARG GLU ASP ILE SEQRES 7 D 147 ALA GLU SER VAL LEU ASP PHE LEU PRO GLY MET THR ARG SEQRES 8 D 147 ASN SER LEU ALA GLU SER ASN ILE ALA HIS ARG ARG HIS SEQRES 9 D 147 LEU LEU GLU ARG LEU THR ARG THR VAL ALA GLU VAL ASP SEQRES 10 D 147 ASN PHE PRO SER GLU THR SER ASN GLY GLU SER ASN ASN SEQRES 11 D 147 ASN ASP SER PRO PRO SER ALA ALA ALA LEU GLU HIS HIS SEQRES 12 D 147 HIS HIS HIS HIS HET CL A 500 1 HET PE4 B 602 16 HET PE4 C 601 22 HET PE4 D 603 15 HETNAM CL CHLORIDE ION HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 5 CL CL 1- FORMUL 6 PE4 3(C16 H34 O8) FORMUL 9 HOH *87(H2 O) HELIX 1 1 GLN A 2 ASN A 34 1 33 HELIX 2 2 ASN A 34 HIS A 48 1 15 HELIX 3 3 ASN A 52 ASP A 62 1 11 HELIX 4 4 ASN A 64 LEU A 83 1 20 HELIX 5 5 PHE A 85 ASN A 118 1 34 HELIX 6 6 GLN B 2 GLY B 31 1 30 HELIX 7 7 ASN B 34 HIS B 48 1 15 HELIX 8 8 ASN B 52 ASP B 62 1 11 HELIX 9 9 ASN B 64 LEU B 83 1 20 HELIX 10 10 PHE B 85 GLU B 115 1 31 HELIX 11 11 GLN C 2 ASN C 34 1 33 HELIX 12 12 ASN C 34 HIS C 48 1 15 HELIX 13 13 ASN C 52 LEU C 61 1 10 HELIX 14 14 ASN C 64 LEU C 83 1 20 HELIX 15 15 PHE C 85 ASN C 118 1 34 HELIX 16 16 GLN D 2 ASN D 34 1 33 HELIX 17 17 ASN D 34 HIS D 48 1 15 HELIX 18 18 ASN D 52 LEU D 61 1 10 HELIX 19 19 ASN D 64 LEU D 83 1 20 HELIX 20 20 PHE D 85 ARG D 102 1 18 CISPEP 1 PHE A 119 PRO A 120 0 -6.16 CISPEP 2 PHE C 119 PRO C 120 0 -4.27 SITE 1 AC1 3 ARG A 108 THR A 112 THR C 112 SITE 1 AC2 10 VAL B 13 PE4 B 602 VAL C 13 TYR C 17 SITE 2 AC2 10 TYR C 20 ILE C 50 GLN C 51 HOH C 621 SITE 3 AC2 10 HOH C 632 HOH C 633 SITE 1 AC3 8 VAL B 13 SER B 16 TYR B 17 TYR B 20 SITE 2 AC3 8 ILE B 50 GLN B 51 PE4 C 601 HOH C 632 SITE 1 AC4 5 TYR A 17 TYR A 20 GLN A 51 TYR D 20 SITE 2 AC4 5 GLN D 51 CRYST1 129.832 129.832 92.742 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007702 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010783 0.00000