data_2PYA # _entry.id 2PYA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PYA pdb_00002pya 10.2210/pdb2pya/pdb RCSB RCSB042917 ? ? WWPDB D_1000042917 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-20 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' diffrn_source 3 3 'Structure model' struct_ref_seq_dif 4 3 'Structure model' struct_site 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PYA _pdbx_database_status.recvd_initial_deposition_date 2007-05-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1yk5 'wild type' unspecified PDB 1yk4 W4L,R5S unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boenisch, H.' 1 'Ladenstein, R.' 2 # _citation.id primary _citation.title ;Ultrahigh-resolution study on Pyrococcus abyssi rubredoxin: II. Introduction of an O-H...Sgamma-Fe hydrogen bond increased the reduction potential by 65 mV. ; _citation.journal_abbrev J.Biol.Inorg.Chem. _citation.journal_volume 12 _citation.page_first 1163 _citation.page_last 1171 _citation.year 2007 _citation.journal_id_ASTM JJBCFA _citation.country GW _citation.journal_id_ISSN 0949-8257 _citation.journal_id_CSD 2154 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17712580 _citation.pdbx_database_id_DOI 10.1007/s00775-007-0289-8 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bonisch, H.' 1 ? primary 'Schmidt, C.L.' 2 ? primary 'Bianco, P.' 3 ? primary 'Ladenstein, R.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Rubredoxin 5788.364 1 ? W4L,R5S,A44S ? ? 2 non-polymer syn 'FE (III) ION' 55.845 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 water nat water 18.015 94 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Rd # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AKLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGSPKSEFERIE _entity_poly.pdbx_seq_one_letter_code_can AKLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGSPKSEFERIE _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (III) ION' FE 3 'SODIUM ION' NA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LYS n 1 3 LEU n 1 4 SER n 1 5 CYS n 1 6 LYS n 1 7 ILE n 1 8 CYS n 1 9 GLY n 1 10 TYR n 1 11 ILE n 1 12 TYR n 1 13 ASP n 1 14 GLU n 1 15 ASP n 1 16 GLU n 1 17 GLY n 1 18 ASP n 1 19 PRO n 1 20 ASP n 1 21 ASN n 1 22 GLY n 1 23 ILE n 1 24 SER n 1 25 PRO n 1 26 GLY n 1 27 THR n 1 28 LYS n 1 29 PHE n 1 30 GLU n 1 31 ASP n 1 32 LEU n 1 33 PRO n 1 34 ASP n 1 35 ASP n 1 36 TRP n 1 37 VAL n 1 38 CYS n 1 39 PRO n 1 40 LEU n 1 41 CYS n 1 42 GLY n 1 43 SER n 1 44 PRO n 1 45 LYS n 1 46 SER n 1 47 GLU n 1 48 PHE n 1 49 GLU n 1 50 ARG n 1 51 ILE n 1 52 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pyrococcus _entity_src_gen.pdbx_gene_src_gene rub _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain GE5/Orsay _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus abyssi' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 29292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21-DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pet15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 2 2 ALA ALA A . n A 1 2 LYS 2 3 3 LYS LYS A . n A 1 3 LEU 3 4 4 LEU LEU A . n A 1 4 SER 4 5 5 SER SER A . n A 1 5 CYS 5 6 6 CYS CYS A . n A 1 6 LYS 6 7 7 LYS LYS A . n A 1 7 ILE 7 8 8 ILE ILE A . n A 1 8 CYS 8 9 9 CYS CYS A . n A 1 9 GLY 9 10 10 GLY GLY A . n A 1 10 TYR 10 11 11 TYR TYR A . n A 1 11 ILE 11 12 12 ILE ILE A . n A 1 12 TYR 12 13 13 TYR TYR A . n A 1 13 ASP 13 14 14 ASP ASP A . n A 1 14 GLU 14 15 15 GLU GLU A . n A 1 15 ASP 15 16 16 ASP ASP A . n A 1 16 GLU 16 17 17 GLU GLU A . n A 1 17 GLY 17 18 18 GLY GLY A . n A 1 18 ASP 18 19 19 ASP ASP A . n A 1 19 PRO 19 20 20 PRO PRO A . n A 1 20 ASP 20 21 21 ASP ASP A . n A 1 21 ASN 21 22 22 ASN ASN A . n A 1 22 GLY 22 23 23 GLY GLY A . n A 1 23 ILE 23 24 24 ILE ILE A . n A 1 24 SER 24 25 25 SER SER A . n A 1 25 PRO 25 26 26 PRO PRO A . n A 1 26 GLY 26 27 27 GLY GLY A . n A 1 27 THR 27 28 28 THR THR A . n A 1 28 LYS 28 29 29 LYS LYS A . n A 1 29 PHE 29 30 30 PHE PHE A . n A 1 30 GLU 30 31 31 GLU GLU A . n A 1 31 ASP 31 32 32 ASP ASP A . n A 1 32 LEU 32 33 33 LEU LEU A . n A 1 33 PRO 33 34 34 PRO PRO A . n A 1 34 ASP 34 35 35 ASP ASP A . n A 1 35 ASP 35 36 36 ASP ASP A . n A 1 36 TRP 36 37 37 TRP TRP A . n A 1 37 VAL 37 38 38 VAL VAL A . n A 1 38 CYS 38 39 39 CYS CYS A . n A 1 39 PRO 39 40 40 PRO PRO A . n A 1 40 LEU 40 41 41 LEU LEU A . n A 1 41 CYS 41 42 42 CYS CYS A . n A 1 42 GLY 42 43 43 GLY GLY A . n A 1 43 SER 43 44 44 SER SER A . n A 1 44 PRO 44 45 45 PRO PRO A . n A 1 45 LYS 45 46 46 LYS LYS A . n A 1 46 SER 46 47 47 SER SER A . n A 1 47 GLU 47 48 48 GLU GLU A . n A 1 48 PHE 48 49 49 PHE PHE A . n A 1 49 GLU 49 50 50 GLU GLU A . n A 1 50 ARG 50 51 51 ARG ARG A . n A 1 51 ILE 51 52 52 ILE ILE A . n A 1 52 GLU 52 53 53 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE 1 54 54 FE FE A . C 3 NA 1 200 200 NA NA A . D 3 NA 1 201 201 NA NA A . E 4 HOH 1 202 55 HOH HOH A . E 4 HOH 2 203 56 HOH HOH A . E 4 HOH 3 204 57 HOH HOH A . E 4 HOH 4 205 58 HOH HOH A . E 4 HOH 5 206 59 HOH HOH A . E 4 HOH 6 207 60 HOH HOH A . E 4 HOH 7 208 61 HOH HOH A . E 4 HOH 8 209 62 HOH HOH A . E 4 HOH 9 210 63 HOH HOH A . E 4 HOH 10 211 64 HOH HOH A . E 4 HOH 11 212 65 HOH HOH A . E 4 HOH 12 213 66 HOH HOH A . E 4 HOH 13 214 67 HOH HOH A . E 4 HOH 14 215 68 HOH HOH A . E 4 HOH 15 216 69 HOH HOH A . E 4 HOH 16 217 70 HOH HOH A . E 4 HOH 17 218 71 HOH HOH A . E 4 HOH 18 219 72 HOH HOH A . E 4 HOH 19 220 73 HOH HOH A . E 4 HOH 20 221 74 HOH HOH A . E 4 HOH 21 222 75 HOH HOH A . E 4 HOH 22 223 76 HOH HOH A . E 4 HOH 23 224 77 HOH HOH A . E 4 HOH 24 225 78 HOH HOH A . E 4 HOH 25 226 79 HOH HOH A . E 4 HOH 26 227 80 HOH HOH A . E 4 HOH 27 228 81 HOH HOH A . E 4 HOH 28 229 82 HOH HOH A . E 4 HOH 29 230 83 HOH HOH A . E 4 HOH 30 231 84 HOH HOH A . E 4 HOH 31 232 85 HOH HOH A . E 4 HOH 32 233 86 HOH HOH A . E 4 HOH 33 234 87 HOH HOH A . E 4 HOH 34 235 88 HOH HOH A . E 4 HOH 35 236 89 HOH HOH A . E 4 HOH 36 237 90 HOH HOH A . E 4 HOH 37 238 91 HOH HOH A . E 4 HOH 38 239 92 HOH HOH A . E 4 HOH 39 240 93 HOH HOH A . E 4 HOH 40 241 94 HOH HOH A . E 4 HOH 41 242 95 HOH HOH A . E 4 HOH 42 243 96 HOH HOH A . E 4 HOH 43 244 97 HOH HOH A . E 4 HOH 44 245 98 HOH HOH A . E 4 HOH 45 246 99 HOH HOH A . E 4 HOH 46 247 100 HOH HOH A . E 4 HOH 47 248 101 HOH HOH A . E 4 HOH 48 249 102 HOH HOH A . E 4 HOH 49 250 103 HOH HOH A . E 4 HOH 50 251 104 HOH HOH A . E 4 HOH 51 252 105 HOH HOH A . E 4 HOH 52 253 106 HOH HOH A . E 4 HOH 53 254 107 HOH HOH A . E 4 HOH 54 255 108 HOH HOH A . E 4 HOH 55 256 109 HOH HOH A . E 4 HOH 56 257 110 HOH HOH A . E 4 HOH 57 258 111 HOH HOH A . E 4 HOH 58 259 112 HOH HOH A . E 4 HOH 59 260 113 HOH HOH A . E 4 HOH 60 261 114 HOH HOH A . E 4 HOH 61 262 115 HOH HOH A . E 4 HOH 62 263 116 HOH HOH A . E 4 HOH 63 264 117 HOH HOH A . E 4 HOH 64 265 118 HOH HOH A . E 4 HOH 65 266 119 HOH HOH A . E 4 HOH 66 267 120 HOH HOH A . E 4 HOH 67 268 121 HOH HOH A . E 4 HOH 68 269 122 HOH HOH A . E 4 HOH 69 270 123 HOH HOH A . E 4 HOH 70 271 124 HOH HOH A . E 4 HOH 71 272 125 HOH HOH A . E 4 HOH 72 273 126 HOH HOH A . E 4 HOH 73 274 127 HOH HOH A . E 4 HOH 74 275 128 HOH HOH A . E 4 HOH 75 276 129 HOH HOH A . E 4 HOH 76 277 130 HOH HOH A . E 4 HOH 77 278 131 HOH HOH A . E 4 HOH 78 279 132 HOH HOH A . E 4 HOH 79 280 133 HOH HOH A . E 4 HOH 80 281 134 HOH HOH A . E 4 HOH 81 282 135 HOH HOH A . E 4 HOH 82 283 136 HOH HOH A . E 4 HOH 83 284 137 HOH HOH A . E 4 HOH 84 285 138 HOH HOH A . E 4 HOH 85 286 139 HOH HOH A . E 4 HOH 86 287 140 HOH HOH A . E 4 HOH 87 288 141 HOH HOH A . E 4 HOH 88 289 142 HOH HOH A . E 4 HOH 89 290 143 HOH HOH A . E 4 HOH 90 291 144 HOH HOH A . E 4 HOH 91 292 145 HOH HOH A . E 4 HOH 92 293 146 HOH HOH A . E 4 HOH 93 294 147 HOH HOH A . E 4 HOH 94 295 148 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 SHELXD phasing . ? 2 SHELXL-97 refinement . ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 2PYA _cell.length_a 25.385 _cell.length_b 39.812 _cell.length_c 45.117 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PYA _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2PYA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_percent_sol 37.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details '3.7 - 4.0 M Sodium Malonate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 6.00' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2003-12-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI [111], HORIZONTALLY FOCUSSING' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.85 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7B' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW7B _diffrn_source.pdbx_wavelength 0.85 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2PYA _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 0.860 _reflns.number_obs 38349 _reflns.number_all ? _reflns.percent_possible_obs 96.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.05300 _reflns.pdbx_netI_over_sigmaI 41.3000 _reflns.B_iso_Wilson_estimate 2.9 _reflns.pdbx_redundancy 5.600 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 0.86 _reflns_shell.d_res_low 0.87 _reflns_shell.percent_possible_all 95.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.14800 _reflns_shell.meanI_over_sigI_obs 9.640 _reflns_shell.pdbx_redundancy 4.70 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2PYA _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 70239 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 0.86 _refine.ls_percent_reflns_obs 96.7 _refine.ls_R_factor_obs 0.098 _refine.ls_R_factor_all 0.098 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.105 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 3516 _refine.ls_number_parameters 4966 _refine.ls_number_restraints 1399 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 7.39 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'DIFFUSE SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2PYA _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 12 _refine_analyze.occupancy_sum_hydrogen 367.00 _refine_analyze.occupancy_sum_non_hydrogen 499.00 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 851 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 100 _refine_hist.number_atoms_total 954 _refine_hist.d_res_high 0.86 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.033 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.062 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.650 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.139 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.161 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 0.86 _refine_ls_shell.d_res_low ? _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine.entry_id 2PYA _pdbx_refine.R_factor_all_no_cutoff 0.098 _pdbx_refine.R_factor_obs_no_cutoff 0.098 _pdbx_refine.free_R_factor_no_cutoff 0.105 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 3516 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2PYA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2PYA _struct.title 'Ultra-high resolution structure of P. abyssi rubredoxin W4L/R5S/A44S' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PYA _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'O-H...S-Fe hydrogen bond, ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RUBR_PYRAB _struct_ref.pdbx_db_accession Q9V099 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code AKWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2PYA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 52 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9V099 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 53 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 53 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2PYA LEU A 3 ? UNP Q9V099 TRP 4 'engineered mutation' 4 1 1 2PYA SER A 4 ? UNP Q9V099 ARG 5 'engineered mutation' 5 2 1 2PYA SER A 43 ? UNP Q9V099 ALA 44 'engineered mutation' 44 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 18 ? GLY A 22 ? ASP A 19 GLY A 23 5 ? 5 HELX_P HELX_P2 2 LYS A 28 ? LEU A 32 ? LYS A 29 LEU A 33 5 ? 5 HELX_P HELX_P3 3 PRO A 44 ? SER A 46 ? PRO A 45 SER A 47 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 11 ? ASP A 13 ? ILE A 12 ASP A 14 A 2 LYS A 2 ? CYS A 5 ? LYS A 3 CYS A 6 A 3 PHE A 48 ? ILE A 51 ? PHE A 49 ILE A 52 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 12 ? O TYR A 13 N LEU A 3 ? N LEU A 4 A 2 3 N SER A 4 ? N SER A 5 O GLU A 49 ? O GLU A 50 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FE 54 ? 4 'BINDING SITE FOR RESIDUE FE A 54' AC2 Software A NA 200 ? 6 'BINDING SITE FOR RESIDUE NA A 200' AC3 Software A NA 201 ? 6 'BINDING SITE FOR RESIDUE NA A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 5 ? CYS A 6 . ? 1_555 ? 2 AC1 4 CYS A 8 ? CYS A 9 . ? 1_555 ? 3 AC1 4 CYS A 38 ? CYS A 39 . ? 1_555 ? 4 AC1 4 CYS A 41 ? CYS A 42 . ? 1_555 ? 5 AC2 6 ASN A 21 ? ASN A 22 . ? 1_555 ? 6 AC2 6 GLU A 30 ? GLU A 31 . ? 3_545 ? 7 AC2 6 HOH E . ? HOH A 205 . ? 1_555 ? 8 AC2 6 HOH E . ? HOH A 220 . ? 1_555 ? 9 AC2 6 HOH E . ? HOH A 230 . ? 1_555 ? 10 AC2 6 HOH E . ? HOH A 254 . ? 1_555 ? 11 AC3 6 GLU A 30 ? GLU A 31 . ? 1_555 ? 12 AC3 6 HOH E . ? HOH A 224 . ? 1_555 ? 13 AC3 6 HOH E . ? HOH A 238 . ? 1_555 ? 14 AC3 6 HOH E . ? HOH A 250 . ? 1_555 ? 15 AC3 6 HOH E . ? HOH A 270 . ? 1_555 ? 16 AC3 6 HOH E . ? HOH A 271 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 31 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 236 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.94 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NZ _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 LYS _pdbx_validate_symm_contact.auth_seq_id_1 3 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 A _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 241 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_455 _pdbx_validate_symm_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CZ A ARG 51 ? ? NH2 A ARG 51 ? ? 1.446 1.326 0.120 0.013 N 2 1 CA A ILE 52 ? ? C A ILE 52 ? ? 1.712 1.525 0.187 0.026 N 3 1 CD A GLU 53 ? ? OE1 A GLU 53 ? ? 1.321 1.252 0.069 0.011 N 4 1 C A GLU 53 ? ? OXT A GLU 53 ? ? 1.344 1.229 0.115 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG A LYS 7 ? A CD A LYS 7 ? A CE A LYS 7 ? A 135.43 111.90 23.53 3.00 N 2 1 CB A ASP 36 ? B CG A ASP 36 ? B OD1 A ASP 36 ? B 128.26 118.30 9.96 0.90 N 3 1 CB A ILE 52 ? ? CA A ILE 52 ? ? C A ILE 52 ? ? 98.07 111.60 -13.53 2.00 N 4 1 CA A ILE 52 ? ? CB A ILE 52 ? ? CG1 A ILE 52 ? ? 123.82 111.00 12.82 1.90 N 5 1 CA A ILE 52 ? ? CB A ILE 52 ? ? CG2 A ILE 52 ? ? 97.10 110.90 -13.80 2.00 N 6 1 OE1 A GLU 53 ? ? CD A GLU 53 ? ? OE2 A GLU 53 ? ? 113.72 123.30 -9.58 1.20 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 FE FE FE N N 88 GLU N N N N 89 GLU CA C N S 90 GLU C C N N 91 GLU O O N N 92 GLU CB C N N 93 GLU CG C N N 94 GLU CD C N N 95 GLU OE1 O N N 96 GLU OE2 O N N 97 GLU OXT O N N 98 GLU H H N N 99 GLU H2 H N N 100 GLU HA H N N 101 GLU HB2 H N N 102 GLU HB3 H N N 103 GLU HG2 H N N 104 GLU HG3 H N N 105 GLU HE2 H N N 106 GLU HXT H N N 107 GLY N N N N 108 GLY CA C N N 109 GLY C C N N 110 GLY O O N N 111 GLY OXT O N N 112 GLY H H N N 113 GLY H2 H N N 114 GLY HA2 H N N 115 GLY HA3 H N N 116 GLY HXT H N N 117 HOH O O N N 118 HOH H1 H N N 119 HOH H2 H N N 120 ILE N N N N 121 ILE CA C N S 122 ILE C C N N 123 ILE O O N N 124 ILE CB C N S 125 ILE CG1 C N N 126 ILE CG2 C N N 127 ILE CD1 C N N 128 ILE OXT O N N 129 ILE H H N N 130 ILE H2 H N N 131 ILE HA H N N 132 ILE HB H N N 133 ILE HG12 H N N 134 ILE HG13 H N N 135 ILE HG21 H N N 136 ILE HG22 H N N 137 ILE HG23 H N N 138 ILE HD11 H N N 139 ILE HD12 H N N 140 ILE HD13 H N N 141 ILE HXT H N N 142 LEU N N N N 143 LEU CA C N S 144 LEU C C N N 145 LEU O O N N 146 LEU CB C N N 147 LEU CG C N N 148 LEU CD1 C N N 149 LEU CD2 C N N 150 LEU OXT O N N 151 LEU H H N N 152 LEU H2 H N N 153 LEU HA H N N 154 LEU HB2 H N N 155 LEU HB3 H N N 156 LEU HG H N N 157 LEU HD11 H N N 158 LEU HD12 H N N 159 LEU HD13 H N N 160 LEU HD21 H N N 161 LEU HD22 H N N 162 LEU HD23 H N N 163 LEU HXT H N N 164 LYS N N N N 165 LYS CA C N S 166 LYS C C N N 167 LYS O O N N 168 LYS CB C N N 169 LYS CG C N N 170 LYS CD C N N 171 LYS CE C N N 172 LYS NZ N N N 173 LYS OXT O N N 174 LYS H H N N 175 LYS H2 H N N 176 LYS HA H N N 177 LYS HB2 H N N 178 LYS HB3 H N N 179 LYS HG2 H N N 180 LYS HG3 H N N 181 LYS HD2 H N N 182 LYS HD3 H N N 183 LYS HE2 H N N 184 LYS HE3 H N N 185 LYS HZ1 H N N 186 LYS HZ2 H N N 187 LYS HZ3 H N N 188 LYS HXT H N N 189 NA NA NA N N 190 PHE N N N N 191 PHE CA C N S 192 PHE C C N N 193 PHE O O N N 194 PHE CB C N N 195 PHE CG C Y N 196 PHE CD1 C Y N 197 PHE CD2 C Y N 198 PHE CE1 C Y N 199 PHE CE2 C Y N 200 PHE CZ C Y N 201 PHE OXT O N N 202 PHE H H N N 203 PHE H2 H N N 204 PHE HA H N N 205 PHE HB2 H N N 206 PHE HB3 H N N 207 PHE HD1 H N N 208 PHE HD2 H N N 209 PHE HE1 H N N 210 PHE HE2 H N N 211 PHE HZ H N N 212 PHE HXT H N N 213 PRO N N N N 214 PRO CA C N S 215 PRO C C N N 216 PRO O O N N 217 PRO CB C N N 218 PRO CG C N N 219 PRO CD C N N 220 PRO OXT O N N 221 PRO H H N N 222 PRO HA H N N 223 PRO HB2 H N N 224 PRO HB3 H N N 225 PRO HG2 H N N 226 PRO HG3 H N N 227 PRO HD2 H N N 228 PRO HD3 H N N 229 PRO HXT H N N 230 SER N N N N 231 SER CA C N S 232 SER C C N N 233 SER O O N N 234 SER CB C N N 235 SER OG O N N 236 SER OXT O N N 237 SER H H N N 238 SER H2 H N N 239 SER HA H N N 240 SER HB2 H N N 241 SER HB3 H N N 242 SER HG H N N 243 SER HXT H N N 244 THR N N N N 245 THR CA C N S 246 THR C C N N 247 THR O O N N 248 THR CB C N R 249 THR OG1 O N N 250 THR CG2 C N N 251 THR OXT O N N 252 THR H H N N 253 THR H2 H N N 254 THR HA H N N 255 THR HB H N N 256 THR HG1 H N N 257 THR HG21 H N N 258 THR HG22 H N N 259 THR HG23 H N N 260 THR HXT H N N 261 TRP N N N N 262 TRP CA C N S 263 TRP C C N N 264 TRP O O N N 265 TRP CB C N N 266 TRP CG C Y N 267 TRP CD1 C Y N 268 TRP CD2 C Y N 269 TRP NE1 N Y N 270 TRP CE2 C Y N 271 TRP CE3 C Y N 272 TRP CZ2 C Y N 273 TRP CZ3 C Y N 274 TRP CH2 C Y N 275 TRP OXT O N N 276 TRP H H N N 277 TRP H2 H N N 278 TRP HA H N N 279 TRP HB2 H N N 280 TRP HB3 H N N 281 TRP HD1 H N N 282 TRP HE1 H N N 283 TRP HE3 H N N 284 TRP HZ2 H N N 285 TRP HZ3 H N N 286 TRP HH2 H N N 287 TRP HXT H N N 288 TYR N N N N 289 TYR CA C N S 290 TYR C C N N 291 TYR O O N N 292 TYR CB C N N 293 TYR CG C Y N 294 TYR CD1 C Y N 295 TYR CD2 C Y N 296 TYR CE1 C Y N 297 TYR CE2 C Y N 298 TYR CZ C Y N 299 TYR OH O N N 300 TYR OXT O N N 301 TYR H H N N 302 TYR H2 H N N 303 TYR HA H N N 304 TYR HB2 H N N 305 TYR HB3 H N N 306 TYR HD1 H N N 307 TYR HD2 H N N 308 TYR HE1 H N N 309 TYR HE2 H N N 310 TYR HH H N N 311 TYR HXT H N N 312 VAL N N N N 313 VAL CA C N S 314 VAL C C N N 315 VAL O O N N 316 VAL CB C N N 317 VAL CG1 C N N 318 VAL CG2 C N N 319 VAL OXT O N N 320 VAL H H N N 321 VAL H2 H N N 322 VAL HA H N N 323 VAL HB H N N 324 VAL HG11 H N N 325 VAL HG12 H N N 326 VAL HG13 H N N 327 VAL HG21 H N N 328 VAL HG22 H N N 329 VAL HG23 H N N 330 VAL HXT H N N 331 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLU N CA sing N N 83 GLU N H sing N N 84 GLU N H2 sing N N 85 GLU CA C sing N N 86 GLU CA CB sing N N 87 GLU CA HA sing N N 88 GLU C O doub N N 89 GLU C OXT sing N N 90 GLU CB CG sing N N 91 GLU CB HB2 sing N N 92 GLU CB HB3 sing N N 93 GLU CG CD sing N N 94 GLU CG HG2 sing N N 95 GLU CG HG3 sing N N 96 GLU CD OE1 doub N N 97 GLU CD OE2 sing N N 98 GLU OE2 HE2 sing N N 99 GLU OXT HXT sing N N 100 GLY N CA sing N N 101 GLY N H sing N N 102 GLY N H2 sing N N 103 GLY CA C sing N N 104 GLY CA HA2 sing N N 105 GLY CA HA3 sing N N 106 GLY C O doub N N 107 GLY C OXT sing N N 108 GLY OXT HXT sing N N 109 HOH O H1 sing N N 110 HOH O H2 sing N N 111 ILE N CA sing N N 112 ILE N H sing N N 113 ILE N H2 sing N N 114 ILE CA C sing N N 115 ILE CA CB sing N N 116 ILE CA HA sing N N 117 ILE C O doub N N 118 ILE C OXT sing N N 119 ILE CB CG1 sing N N 120 ILE CB CG2 sing N N 121 ILE CB HB sing N N 122 ILE CG1 CD1 sing N N 123 ILE CG1 HG12 sing N N 124 ILE CG1 HG13 sing N N 125 ILE CG2 HG21 sing N N 126 ILE CG2 HG22 sing N N 127 ILE CG2 HG23 sing N N 128 ILE CD1 HD11 sing N N 129 ILE CD1 HD12 sing N N 130 ILE CD1 HD13 sing N N 131 ILE OXT HXT sing N N 132 LEU N CA sing N N 133 LEU N H sing N N 134 LEU N H2 sing N N 135 LEU CA C sing N N 136 LEU CA CB sing N N 137 LEU CA HA sing N N 138 LEU C O doub N N 139 LEU C OXT sing N N 140 LEU CB CG sing N N 141 LEU CB HB2 sing N N 142 LEU CB HB3 sing N N 143 LEU CG CD1 sing N N 144 LEU CG CD2 sing N N 145 LEU CG HG sing N N 146 LEU CD1 HD11 sing N N 147 LEU CD1 HD12 sing N N 148 LEU CD1 HD13 sing N N 149 LEU CD2 HD21 sing N N 150 LEU CD2 HD22 sing N N 151 LEU CD2 HD23 sing N N 152 LEU OXT HXT sing N N 153 LYS N CA sing N N 154 LYS N H sing N N 155 LYS N H2 sing N N 156 LYS CA C sing N N 157 LYS CA CB sing N N 158 LYS CA HA sing N N 159 LYS C O doub N N 160 LYS C OXT sing N N 161 LYS CB CG sing N N 162 LYS CB HB2 sing N N 163 LYS CB HB3 sing N N 164 LYS CG CD sing N N 165 LYS CG HG2 sing N N 166 LYS CG HG3 sing N N 167 LYS CD CE sing N N 168 LYS CD HD2 sing N N 169 LYS CD HD3 sing N N 170 LYS CE NZ sing N N 171 LYS CE HE2 sing N N 172 LYS CE HE3 sing N N 173 LYS NZ HZ1 sing N N 174 LYS NZ HZ2 sing N N 175 LYS NZ HZ3 sing N N 176 LYS OXT HXT sing N N 177 PHE N CA sing N N 178 PHE N H sing N N 179 PHE N H2 sing N N 180 PHE CA C sing N N 181 PHE CA CB sing N N 182 PHE CA HA sing N N 183 PHE C O doub N N 184 PHE C OXT sing N N 185 PHE CB CG sing N N 186 PHE CB HB2 sing N N 187 PHE CB HB3 sing N N 188 PHE CG CD1 doub Y N 189 PHE CG CD2 sing Y N 190 PHE CD1 CE1 sing Y N 191 PHE CD1 HD1 sing N N 192 PHE CD2 CE2 doub Y N 193 PHE CD2 HD2 sing N N 194 PHE CE1 CZ doub Y N 195 PHE CE1 HE1 sing N N 196 PHE CE2 CZ sing Y N 197 PHE CE2 HE2 sing N N 198 PHE CZ HZ sing N N 199 PHE OXT HXT sing N N 200 PRO N CA sing N N 201 PRO N CD sing N N 202 PRO N H sing N N 203 PRO CA C sing N N 204 PRO CA CB sing N N 205 PRO CA HA sing N N 206 PRO C O doub N N 207 PRO C OXT sing N N 208 PRO CB CG sing N N 209 PRO CB HB2 sing N N 210 PRO CB HB3 sing N N 211 PRO CG CD sing N N 212 PRO CG HG2 sing N N 213 PRO CG HG3 sing N N 214 PRO CD HD2 sing N N 215 PRO CD HD3 sing N N 216 PRO OXT HXT sing N N 217 SER N CA sing N N 218 SER N H sing N N 219 SER N H2 sing N N 220 SER CA C sing N N 221 SER CA CB sing N N 222 SER CA HA sing N N 223 SER C O doub N N 224 SER C OXT sing N N 225 SER CB OG sing N N 226 SER CB HB2 sing N N 227 SER CB HB3 sing N N 228 SER OG HG sing N N 229 SER OXT HXT sing N N 230 THR N CA sing N N 231 THR N H sing N N 232 THR N H2 sing N N 233 THR CA C sing N N 234 THR CA CB sing N N 235 THR CA HA sing N N 236 THR C O doub N N 237 THR C OXT sing N N 238 THR CB OG1 sing N N 239 THR CB CG2 sing N N 240 THR CB HB sing N N 241 THR OG1 HG1 sing N N 242 THR CG2 HG21 sing N N 243 THR CG2 HG22 sing N N 244 THR CG2 HG23 sing N N 245 THR OXT HXT sing N N 246 TRP N CA sing N N 247 TRP N H sing N N 248 TRP N H2 sing N N 249 TRP CA C sing N N 250 TRP CA CB sing N N 251 TRP CA HA sing N N 252 TRP C O doub N N 253 TRP C OXT sing N N 254 TRP CB CG sing N N 255 TRP CB HB2 sing N N 256 TRP CB HB3 sing N N 257 TRP CG CD1 doub Y N 258 TRP CG CD2 sing Y N 259 TRP CD1 NE1 sing Y N 260 TRP CD1 HD1 sing N N 261 TRP CD2 CE2 doub Y N 262 TRP CD2 CE3 sing Y N 263 TRP NE1 CE2 sing Y N 264 TRP NE1 HE1 sing N N 265 TRP CE2 CZ2 sing Y N 266 TRP CE3 CZ3 doub Y N 267 TRP CE3 HE3 sing N N 268 TRP CZ2 CH2 doub Y N 269 TRP CZ2 HZ2 sing N N 270 TRP CZ3 CH2 sing Y N 271 TRP CZ3 HZ3 sing N N 272 TRP CH2 HH2 sing N N 273 TRP OXT HXT sing N N 274 TYR N CA sing N N 275 TYR N H sing N N 276 TYR N H2 sing N N 277 TYR CA C sing N N 278 TYR CA CB sing N N 279 TYR CA HA sing N N 280 TYR C O doub N N 281 TYR C OXT sing N N 282 TYR CB CG sing N N 283 TYR CB HB2 sing N N 284 TYR CB HB3 sing N N 285 TYR CG CD1 doub Y N 286 TYR CG CD2 sing Y N 287 TYR CD1 CE1 sing Y N 288 TYR CD1 HD1 sing N N 289 TYR CD2 CE2 doub Y N 290 TYR CD2 HD2 sing N N 291 TYR CE1 CZ doub Y N 292 TYR CE1 HE1 sing N N 293 TYR CE2 CZ sing Y N 294 TYR CE2 HE2 sing N N 295 TYR CZ OH sing N N 296 TYR OH HH sing N N 297 TYR OXT HXT sing N N 298 VAL N CA sing N N 299 VAL N H sing N N 300 VAL N H2 sing N N 301 VAL CA C sing N N 302 VAL CA CB sing N N 303 VAL CA HA sing N N 304 VAL C O doub N N 305 VAL C OXT sing N N 306 VAL CB CG1 sing N N 307 VAL CB CG2 sing N N 308 VAL CB HB sing N N 309 VAL CG1 HG11 sing N N 310 VAL CG1 HG12 sing N N 311 VAL CG1 HG13 sing N N 312 VAL CG2 HG21 sing N N 313 VAL CG2 HG22 sing N N 314 VAL CG2 HG23 sing N N 315 VAL OXT HXT sing N N 316 # _atom_sites.entry_id 2PYA _atom_sites.fract_transf_matrix[1][1] 0.039393 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025118 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022165 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE H N NA O S # loop_