HEADER TRANSFERASE 16-MAY-07 2PYW TITLE STRUCTURE OF A. THALIANA 5-METHYLTHIORIBOSE KINASE IN COMPLEX WITH ADP TITLE 2 AND MTR COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AT1G49820/F10F5_1; COMPND 5 EC: 2.7.1.100; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: F10F5.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS 5-METHYLTHIORIBOSE KINASE, PLANT METHIONINE RECYCLING, REFOLDING, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.Y.KU REVDAT 5 30-AUG-23 2PYW 1 HETSYN REVDAT 4 29-JUL-20 2PYW 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 2PYW 1 VERSN REVDAT 2 24-FEB-09 2PYW 1 VERSN REVDAT 1 15-JAN-08 2PYW 0 JRNL AUTH S.Y.KU,K.A.CORNELL,P.L.HOWELL JRNL TITL STRUCTURE OF A. THALIANA 5-METHYLTHIORIBOSE KINASE IN JRNL TITL 2 COMPLEX WITH ADP AND MTR REVEALS A MORE OCCLUDED ACTIVE SITE JRNL TITL 3 THAN ITS BACTERIAL HOMOLOG JRNL REF BMC STRUCT.BIOL. V. 7 70 2007 JRNL REFN ESSN 1472-6807 JRNL PMID 17961230 JRNL DOI 10.1186/1472-6807-7-70 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 78352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4105 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5146 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 268 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 103 REMARK 3 SOLVENT ATOMS : 778 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.451 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6895 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9322 ; 1.380 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 825 ; 5.907 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 333 ;33.042 ;23.664 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1181 ;11.901 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;16.673 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1020 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5197 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3446 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4777 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 713 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.068 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.214 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.317 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4290 ; 0.819 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6632 ; 1.196 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3029 ; 2.098 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2690 ; 3.199 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82470 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 80.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.380 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.17500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OLC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000, 0.1M SODIUM CACODYLATE, REMARK 280 0.2M MAGNESIUM ACETATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.23000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.12000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.23000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.12000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 420 REMARK 465 MET B 1 REMARK 465 ALA B 30 REMARK 465 ASP B 31 REMARK 465 LYS B 32 REMARK 465 SER B 33 REMARK 465 ASP B 34 REMARK 465 ASP B 35 REMARK 465 ASP B 36 REMARK 465 SER B 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 GLN A 288 CG CD OE1 NE2 REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 GLU A 380 CG CD OE1 OE2 REMARK 470 SER B 2 OG REMARK 470 PHE B 3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 SER B 56 OG REMARK 470 GLN B 418 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1196 O HOH A 1196 2656 1.43 REMARK 500 O HOH A 1341 O HOH A 1341 2656 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 67 25.25 -73.69 REMARK 500 SER A 187 -59.63 -125.19 REMARK 500 ASP A 238 48.92 -151.71 REMARK 500 PRO A 256 30.79 -81.10 REMARK 500 PRO B 67 24.03 -73.24 REMARK 500 TYR B 158 -43.46 -130.31 REMARK 500 SER B 187 -62.06 -129.62 REMARK 500 ASP B 238 48.15 -154.90 REMARK 500 PRO B 256 36.90 -80.48 REMARK 500 ASP B 323 42.82 -100.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 205 OD2 REMARK 620 2 HOH A1142 O 89.7 REMARK 620 3 HOH A1312 O 90.0 88.1 REMARK 620 4 HOH A1359 O 84.3 173.5 89.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 500 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 255 OD1 REMARK 620 2 ASP A 255 OD2 61.8 REMARK 620 3 GLU A 257 OE2 97.0 158.6 REMARK 620 4 ADP A 999 O2B 89.4 89.2 93.2 REMARK 620 5 HOH A1003 O 161.1 100.6 100.1 97.6 REMARK 620 6 HOH A1004 O 84.7 78.7 97.9 168.0 85.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 255 OD2 REMARK 620 2 ADP A 999 O3B 92.4 REMARK 620 3 ADP A 999 O2A 99.7 89.6 REMARK 620 4 HOH A1000 O 89.6 177.9 90.9 REMARK 620 5 HOH A1001 O 168.3 87.6 92.0 90.3 REMARK 620 6 HOH A1002 O 87.2 94.4 171.9 84.9 81.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 500 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 255 OD1 REMARK 620 2 ASP B 255 OD2 57.5 REMARK 620 3 GLU B 257 OE2 94.1 151.6 REMARK 620 4 ADP B 999 O2B 84.7 86.4 91.8 REMARK 620 5 HOH B1003 O 158.4 101.9 106.2 101.5 REMARK 620 6 HOH B1004 O 77.2 77.7 96.8 160.4 93.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 255 OD2 REMARK 620 2 ADP B 999 O2A 93.4 REMARK 620 3 ADP B 999 O3B 88.3 88.4 REMARK 620 4 HOH B1000 O 174.8 91.8 91.6 REMARK 620 5 HOH B1001 O 91.1 174.3 95.3 83.7 REMARK 620 6 HOH B1002 O 92.3 88.1 176.5 88.2 88.1 REMARK 620 N 1 2 3 4 5 DBREF 2PYW A 1 420 UNP Q9C6D2 Q9C6D2_ARATH 1 420 DBREF 2PYW B 1 420 UNP Q9C6D2 Q9C6D2_ARATH 1 420 SEQRES 1 A 420 MET SER PHE GLU GLU PHE THR PRO LEU ASN GLU LYS SER SEQRES 2 A 420 LEU VAL ASP TYR ILE LYS SER THR PRO ALA LEU SER SER SEQRES 3 A 420 LYS ILE GLY ALA ASP LYS SER ASP ASP ASP LEU VAL ILE SEQRES 4 A 420 LYS GLU VAL GLY ASP GLY ASN LEU ASN PHE VAL PHE ILE SEQRES 5 A 420 VAL VAL GLY SER SER GLY SER LEU VAL ILE LYS GLN ALA SEQRES 6 A 420 LEU PRO TYR ILE ARG CYS ILE GLY GLU SER TRP PRO MET SEQRES 7 A 420 THR LYS GLU ARG ALA TYR PHE GLU ALA THR THR LEU ARG SEQRES 8 A 420 LYS HIS GLY ASN LEU SER PRO ASP HIS VAL PRO GLU VAL SEQRES 9 A 420 TYR HIS PHE ASP ARG THR MET ALA LEU ILE GLY MET ARG SEQRES 10 A 420 TYR LEU GLU PRO PRO HIS ILE ILE LEU ARG LYS GLY LEU SEQRES 11 A 420 ILE ALA GLY ILE GLU TYR PRO PHE LEU ALA ASP HIS MET SEQRES 12 A 420 SER ASP TYR MET ALA LYS THR LEU PHE PHE THR SER LEU SEQRES 13 A 420 LEU TYR HIS ASP THR THR GLU HIS ARG ARG ALA VAL THR SEQRES 14 A 420 GLU PHE CYS GLY ASN VAL GLU LEU CYS ARG LEU THR GLU SEQRES 15 A 420 GLN VAL VAL PHE SER ASP PRO TYR ARG VAL SER THR PHE SEQRES 16 A 420 ASN ARG TRP THR SER PRO TYR LEU ASP ASP ASP ALA LYS SEQRES 17 A 420 ALA VAL ARG GLU ASP SER ALA LEU LYS LEU GLU ILE ALA SEQRES 18 A 420 GLU LEU LYS SER MET PHE CYS GLU ARG ALA GLN ALA LEU SEQRES 19 A 420 ILE HIS GLY ASP LEU HIS THR GLY SER VAL MET VAL THR SEQRES 20 A 420 GLN ASP SER THR GLN VAL ILE ASP PRO GLU PHE SER PHE SEQRES 21 A 420 TYR GLY PRO MET GLY PHE ASP ILE GLY ALA TYR LEU GLY SEQRES 22 A 420 ASN LEU ILE LEU ALA PHE PHE ALA GLN ASP GLY HIS ALA SEQRES 23 A 420 THR GLN GLU ASN ASP ARG LYS GLU TYR LYS GLN TRP ILE SEQRES 24 A 420 LEU ARG THR ILE GLU GLN THR TRP ASN LEU PHE ASN LYS SEQRES 25 A 420 ARG PHE ILE ALA LEU TRP ASP GLN ASN LYS ASP GLY PRO SEQRES 26 A 420 GLY GLU ALA TYR LEU ALA ASP ILE TYR ASN ASN THR GLU SEQRES 27 A 420 VAL LEU LYS PHE VAL GLN GLU ASN TYR MET ARG ASN LEU SEQRES 28 A 420 LEU HIS ASP SER LEU GLY PHE GLY ALA ALA LYS MET ILE SEQRES 29 A 420 ARG ARG ILE VAL GLY VAL ALA HIS VAL GLU ASP PHE GLU SEQRES 30 A 420 SER ILE GLU GLU ASP LYS ARG ARG ALA ILE CYS GLU ARG SEQRES 31 A 420 SER ALA LEU GLU PHE ALA LYS MET LEU LEU LYS GLU ARG SEQRES 32 A 420 ARG LYS PHE LYS SER ILE GLY GLU VAL VAL SER ALA ILE SEQRES 33 A 420 GLN GLN GLN SER SEQRES 1 B 420 MET SER PHE GLU GLU PHE THR PRO LEU ASN GLU LYS SER SEQRES 2 B 420 LEU VAL ASP TYR ILE LYS SER THR PRO ALA LEU SER SER SEQRES 3 B 420 LYS ILE GLY ALA ASP LYS SER ASP ASP ASP LEU VAL ILE SEQRES 4 B 420 LYS GLU VAL GLY ASP GLY ASN LEU ASN PHE VAL PHE ILE SEQRES 5 B 420 VAL VAL GLY SER SER GLY SER LEU VAL ILE LYS GLN ALA SEQRES 6 B 420 LEU PRO TYR ILE ARG CYS ILE GLY GLU SER TRP PRO MET SEQRES 7 B 420 THR LYS GLU ARG ALA TYR PHE GLU ALA THR THR LEU ARG SEQRES 8 B 420 LYS HIS GLY ASN LEU SER PRO ASP HIS VAL PRO GLU VAL SEQRES 9 B 420 TYR HIS PHE ASP ARG THR MET ALA LEU ILE GLY MET ARG SEQRES 10 B 420 TYR LEU GLU PRO PRO HIS ILE ILE LEU ARG LYS GLY LEU SEQRES 11 B 420 ILE ALA GLY ILE GLU TYR PRO PHE LEU ALA ASP HIS MET SEQRES 12 B 420 SER ASP TYR MET ALA LYS THR LEU PHE PHE THR SER LEU SEQRES 13 B 420 LEU TYR HIS ASP THR THR GLU HIS ARG ARG ALA VAL THR SEQRES 14 B 420 GLU PHE CYS GLY ASN VAL GLU LEU CYS ARG LEU THR GLU SEQRES 15 B 420 GLN VAL VAL PHE SER ASP PRO TYR ARG VAL SER THR PHE SEQRES 16 B 420 ASN ARG TRP THR SER PRO TYR LEU ASP ASP ASP ALA LYS SEQRES 17 B 420 ALA VAL ARG GLU ASP SER ALA LEU LYS LEU GLU ILE ALA SEQRES 18 B 420 GLU LEU LYS SER MET PHE CYS GLU ARG ALA GLN ALA LEU SEQRES 19 B 420 ILE HIS GLY ASP LEU HIS THR GLY SER VAL MET VAL THR SEQRES 20 B 420 GLN ASP SER THR GLN VAL ILE ASP PRO GLU PHE SER PHE SEQRES 21 B 420 TYR GLY PRO MET GLY PHE ASP ILE GLY ALA TYR LEU GLY SEQRES 22 B 420 ASN LEU ILE LEU ALA PHE PHE ALA GLN ASP GLY HIS ALA SEQRES 23 B 420 THR GLN GLU ASN ASP ARG LYS GLU TYR LYS GLN TRP ILE SEQRES 24 B 420 LEU ARG THR ILE GLU GLN THR TRP ASN LEU PHE ASN LYS SEQRES 25 B 420 ARG PHE ILE ALA LEU TRP ASP GLN ASN LYS ASP GLY PRO SEQRES 26 B 420 GLY GLU ALA TYR LEU ALA ASP ILE TYR ASN ASN THR GLU SEQRES 27 B 420 VAL LEU LYS PHE VAL GLN GLU ASN TYR MET ARG ASN LEU SEQRES 28 B 420 LEU HIS ASP SER LEU GLY PHE GLY ALA ALA LYS MET ILE SEQRES 29 B 420 ARG ARG ILE VAL GLY VAL ALA HIS VAL GLU ASP PHE GLU SEQRES 30 B 420 SER ILE GLU GLU ASP LYS ARG ARG ALA ILE CYS GLU ARG SEQRES 31 B 420 SER ALA LEU GLU PHE ALA LYS MET LEU LEU LYS GLU ARG SEQRES 32 B 420 ARG LYS PHE LYS SER ILE GLY GLU VAL VAL SER ALA ILE SEQRES 33 B 420 GLN GLN GLN SER HET CL A 888 1 HET MG A 500 1 HET MG A 501 1 HET MG A 502 1 HET SR1 A 998 11 HET ADP A 999 27 HET EDO A 801 4 HET CL B 888 1 HET MG B 500 1 HET MG B 501 1 HET SR1 B 998 11 HET ADP B 999 27 HET EDO B 802 4 HET EDO B 803 4 HET EDO B 804 4 HET EDO B 805 4 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM SR1 5-S-METHYL-5-THIO-ALPHA-D-RIBOFURANOSE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN SR1 5-S-METHYL-5-THIO-ALPHA-D-RIBOSE; 5-S-METHYL-5-THIO-D- HETSYN 2 SR1 RIBOSE; 5-S-METHYL-5-THIO-RIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL 2(CL 1-) FORMUL 4 MG 5(MG 2+) FORMUL 7 SR1 2(C6 H12 O4 S) FORMUL 8 ADP 2(C10 H15 N5 O10 P2) FORMUL 9 EDO 5(C2 H6 O2) FORMUL 19 HOH *778(H2 O) HELIX 1 1 LYS A 12 SER A 20 1 9 HELIX 2 2 THR A 21 GLY A 29 1 9 HELIX 3 3 GLU A 81 SER A 97 1 17 HELIX 4 4 PRO A 98 VAL A 101 5 4 HELIX 5 5 LEU A 126 GLY A 133 1 8 HELIX 6 6 PHE A 138 PHE A 153 1 16 HELIX 7 7 ASP A 160 CYS A 172 1 13 HELIX 8 8 ASN A 174 VAL A 185 1 12 HELIX 9 9 SER A 187 ARG A 191 5 5 HELIX 10 10 LEU A 203 ARG A 211 1 9 HELIX 11 11 ASP A 213 ARG A 230 1 18 HELIX 12 12 HIS A 240 GLY A 242 5 3 HELIX 13 13 PRO A 263 GLN A 282 1 20 HELIX 14 14 ASP A 283 ALA A 286 5 4 HELIX 15 15 ARG A 292 ASN A 321 1 30 HELIX 16 16 ASN A 336 GLY A 369 1 34 HELIX 17 17 VAL A 373 SER A 378 1 6 HELIX 18 18 GLU A 381 ARG A 403 1 23 HELIX 19 19 ARG A 404 PHE A 406 5 3 HELIX 20 20 SER A 408 GLN A 419 1 12 HELIX 21 21 LYS B 12 SER B 20 1 9 HELIX 22 22 THR B 21 GLY B 29 1 9 HELIX 23 23 GLU B 81 SER B 97 1 17 HELIX 24 24 PRO B 98 VAL B 101 5 4 HELIX 25 25 LEU B 126 ALA B 132 1 7 HELIX 26 26 PHE B 138 PHE B 153 1 16 HELIX 27 27 ASP B 160 CYS B 172 1 13 HELIX 28 28 ASN B 174 VAL B 185 1 12 HELIX 29 29 SER B 187 ARG B 191 5 5 HELIX 30 30 LEU B 203 ARG B 211 1 9 HELIX 31 31 ASP B 213 ARG B 230 1 18 HELIX 32 32 HIS B 240 GLY B 242 5 3 HELIX 33 33 ASP B 255 SER B 259 5 5 HELIX 34 34 MET B 264 GLN B 282 1 19 HELIX 35 35 ASP B 283 ALA B 286 5 4 HELIX 36 36 ARG B 292 ASN B 321 1 30 HELIX 37 37 ASN B 336 GLY B 369 1 34 HELIX 38 38 VAL B 373 SER B 378 1 6 HELIX 39 39 GLU B 381 ARG B 403 1 23 HELIX 40 40 ARG B 404 PHE B 406 5 3 HELIX 41 41 SER B 408 GLN B 419 1 12 SHEET 1 A 5 VAL A 38 GLU A 41 0 SHEET 2 A 5 PHE A 49 VAL A 54 -1 O ILE A 52 N LYS A 40 SHEET 3 A 5 SER A 59 GLN A 64 -1 O LEU A 60 N VAL A 53 SHEET 4 A 5 LEU A 113 MET A 116 -1 O ILE A 114 N LYS A 63 SHEET 5 A 5 VAL A 104 ASP A 108 -1 N HIS A 106 O GLY A 115 SHEET 1 B 3 ILE A 124 ILE A 125 0 SHEET 2 B 3 VAL A 244 VAL A 246 -1 O VAL A 246 N ILE A 124 SHEET 3 B 3 THR A 251 VAL A 253 -1 O GLN A 252 N MET A 245 SHEET 1 C 2 ALA A 233 ILE A 235 0 SHEET 2 C 2 PHE A 260 GLY A 262 -1 O PHE A 260 N ILE A 235 SHEET 1 D 5 VAL B 38 GLU B 41 0 SHEET 2 D 5 PHE B 49 VAL B 54 -1 O VAL B 54 N VAL B 38 SHEET 3 D 5 SER B 59 GLN B 64 -1 O LEU B 60 N VAL B 53 SHEET 4 D 5 LEU B 113 MET B 116 -1 O MET B 116 N VAL B 61 SHEET 5 D 5 VAL B 104 ASP B 108 -1 N HIS B 106 O GLY B 115 SHEET 1 E 3 ILE B 124 ILE B 125 0 SHEET 2 E 3 VAL B 244 VAL B 246 -1 O VAL B 246 N ILE B 124 SHEET 3 E 3 THR B 251 VAL B 253 -1 O GLN B 252 N MET B 245 SHEET 1 F 2 ALA B 233 ILE B 235 0 SHEET 2 F 2 PHE B 260 GLY B 262 -1 O PHE B 260 N ILE B 235 LINK OD2 ASP A 205 MG MG A 502 1555 1555 2.24 LINK OD1 ASP A 255 MG MG A 500 1555 1555 2.22 LINK OD2 ASP A 255 MG MG A 500 1555 1555 2.11 LINK OD2 ASP A 255 MG MG A 501 1555 1555 2.11 LINK OE2 GLU A 257 MG MG A 500 1555 1555 1.96 LINK MG MG A 500 O2B ADP A 999 1555 1555 2.11 LINK MG MG A 500 O HOH A1003 1555 1555 2.01 LINK MG MG A 500 O HOH A1004 1555 1555 2.28 LINK MG MG A 501 O3B ADP A 999 1555 1555 2.05 LINK MG MG A 501 O2A ADP A 999 1555 1555 1.99 LINK MG MG A 501 O HOH A1000 1555 1555 2.12 LINK MG MG A 501 O HOH A1001 1555 1555 2.10 LINK MG MG A 501 O HOH A1002 1555 1555 2.20 LINK MG MG A 502 O HOH A1142 1555 1555 2.21 LINK MG MG A 502 O HOH A1312 1555 1555 2.08 LINK MG MG A 502 O HOH A1359 1555 1555 2.15 LINK OD1 ASP B 255 MG MG B 500 1555 1555 2.35 LINK OD2 ASP B 255 MG MG B 500 1555 1555 2.20 LINK OD2 ASP B 255 MG MG B 501 1555 1555 2.13 LINK OE2 GLU B 257 MG MG B 500 1555 1555 1.88 LINK MG MG B 500 O2B ADP B 999 1555 1555 2.07 LINK MG MG B 500 O HOH B1003 1555 1555 2.09 LINK MG MG B 500 O HOH B1004 1555 1555 2.35 LINK MG MG B 501 O2A ADP B 999 1555 1555 2.09 LINK MG MG B 501 O3B ADP B 999 1555 1555 2.02 LINK MG MG B 501 O HOH B1000 1555 1555 2.08 LINK MG MG B 501 O HOH B1001 1555 1555 2.10 LINK MG MG B 501 O HOH B1002 1555 1555 2.04 CISPEP 1 PRO A 121 PRO A 122 0 6.72 CISPEP 2 SER A 200 PRO A 201 0 3.12 CISPEP 3 VAL B 54 GLY B 55 0 12.86 CISPEP 4 PRO B 121 PRO B 122 0 6.70 CISPEP 5 SER B 200 PRO B 201 0 7.67 CISPEP 6 GLY B 324 PRO B 325 0 3.07 CRYST1 162.460 82.240 91.080 90.00 117.83 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006155 0.000000 0.003249 0.00000 SCALE2 0.000000 0.012160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012415 0.00000