HEADER SIGNALING PROTEIN 17-MAY-07 2PZ1 TITLE CRYSTAL STRUCTURE OF AUTO-INHIBITED ASEF COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APC-STIMULATED GUANINE NUCLEOTIDE EXCHANGE FACTOR, ASEF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARHGEF4, KIAA1112; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA KEYWDS HELICAL BUNDLE, BETA BARREL, BETA SANDWICH, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.BETTS,J.SONDEK,K.L.ROSSMAN REVDAT 6 21-FEB-24 2PZ1 1 SEQADV REVDAT 5 18-OCT-17 2PZ1 1 REMARK REVDAT 4 13-JUL-11 2PZ1 1 VERSN REVDAT 3 24-FEB-09 2PZ1 1 VERSN REVDAT 2 25-DEC-07 2PZ1 1 JRNL REVDAT 1 21-AUG-07 2PZ1 0 JRNL AUTH N.MITIN,L.BETTS,M.E.YOHE,C.J.DER,J.SONDEK,K.L.ROSSMAN JRNL TITL RELEASE OF AUTOINHIBITION OF ASEF BY APC LEADS TO CDC42 JRNL TITL 2 ACTIVATION AND TUMOR SUPPRESSION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 14 814 2007 JRNL REFN ISSN 1545-9993 JRNL PMID 17704816 JRNL DOI 10.1038/NSMB1290 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 19854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1071 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1366 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3330 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 49.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.92000 REMARK 3 B22 (A**2) : -1.35000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.374 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.267 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.619 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3394 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4565 ; 1.063 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 406 ; 5.818 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;33.483 ;23.797 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 622 ;17.582 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;16.336 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 477 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2613 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1577 ; 0.248 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2298 ; 0.320 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 265 ; 0.227 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.298 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.225 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2068 ; 0.584 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3224 ; 1.005 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1493 ; 0.488 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1341 ; 0.786 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0245 15.2777 40.2210 REMARK 3 T TENSOR REMARK 3 T11: 0.3235 T22: 0.3515 REMARK 3 T33: 0.0109 T12: 0.2395 REMARK 3 T13: -0.1059 T23: 0.0735 REMARK 3 L TENSOR REMARK 3 L11: 23.0201 L22: 10.0457 REMARK 3 L33: 47.0624 L12: 1.5190 REMARK 3 L13: -5.2111 L23: 9.8814 REMARK 3 S TENSOR REMARK 3 S11: -0.7146 S12: -2.5000 S13: -3.3208 REMARK 3 S21: 1.5045 S22: 0.5967 S23: -1.9194 REMARK 3 S31: -1.3423 S32: -2.1825 S33: 0.1179 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6448 16.3329 23.8018 REMARK 3 T TENSOR REMARK 3 T11: -0.2392 T22: -0.2495 REMARK 3 T33: -0.1598 T12: -0.0194 REMARK 3 T13: 0.0503 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 3.7626 L22: 4.2322 REMARK 3 L33: 3.1331 L12: -0.9476 REMARK 3 L13: 0.9390 L23: 0.2728 REMARK 3 S TENSOR REMARK 3 S11: 0.1084 S12: -0.1728 S13: 0.2024 REMARK 3 S21: -0.2575 S22: -0.0820 S23: -0.5459 REMARK 3 S31: -0.0837 S32: 0.2205 S33: -0.0265 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 278 A 404 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7459 -0.7524 24.7500 REMARK 3 T TENSOR REMARK 3 T11: -0.1728 T22: -0.1946 REMARK 3 T33: -0.2048 T12: -0.0360 REMARK 3 T13: 0.0182 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 2.4601 L22: 1.9369 REMARK 3 L33: 1.5893 L12: -0.6509 REMARK 3 L13: 0.4754 L23: -0.5224 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: 0.0194 S13: -0.1464 REMARK 3 S21: -0.0227 S22: -0.0290 S23: -0.0613 REMARK 3 S31: -0.0324 S32: -0.0762 S33: 0.0356 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 405 A 416 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3209 10.2366 29.9004 REMARK 3 T TENSOR REMARK 3 T11: 0.0136 T22: 0.1929 REMARK 3 T33: 0.0197 T12: -0.1374 REMARK 3 T13: -0.0707 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 26.7788 L22: 1.9130 REMARK 3 L33: 10.2554 L12: -1.9206 REMARK 3 L13: -14.2664 L23: 3.1942 REMARK 3 S TENSOR REMARK 3 S11: 1.2966 S12: -2.7043 S13: 1.1471 REMARK 3 S21: 0.5223 S22: -0.0803 S23: -0.8290 REMARK 3 S31: -0.1584 S32: 1.3554 S33: -1.2163 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 417 A 477 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3279 -0.4037 20.7993 REMARK 3 T TENSOR REMARK 3 T11: -0.2308 T22: -0.2111 REMARK 3 T33: -0.1115 T12: 0.0126 REMARK 3 T13: 0.1073 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 2.3700 L22: 3.0327 REMARK 3 L33: 2.0168 L12: 0.6771 REMARK 3 L13: -0.7302 L23: 0.0347 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: 0.2145 S13: -0.3830 REMARK 3 S21: -0.2029 S22: 0.0270 S23: -0.4571 REMARK 3 S31: -0.0537 S32: 0.1943 S33: 0.0051 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 478 A 506 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9661 24.3354 2.0345 REMARK 3 T TENSOR REMARK 3 T11: 0.0511 T22: -0.1959 REMARK 3 T33: -0.2806 T12: -0.0591 REMARK 3 T13: 0.0367 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 5.1660 L22: 7.6776 REMARK 3 L33: 6.5055 L12: 0.3278 REMARK 3 L13: 1.6553 L23: 0.3795 REMARK 3 S TENSOR REMARK 3 S11: -0.3002 S12: 0.1043 S13: 0.1749 REMARK 3 S21: 0.0646 S22: 0.1726 S23: 0.4730 REMARK 3 S31: -0.8288 S32: 0.0532 S33: 0.1276 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 507 A 518 REMARK 3 ORIGIN FOR THE GROUP (A): 31.0265 37.7192 -0.1163 REMARK 3 T TENSOR REMARK 3 T11: 0.2131 T22: 0.0907 REMARK 3 T33: 0.1336 T12: -0.1405 REMARK 3 T13: 0.1202 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 10.3548 L22: 34.6147 REMARK 3 L33: 25.3340 L12: 9.1564 REMARK 3 L13: -6.9426 L23: 2.3864 REMARK 3 S TENSOR REMARK 3 S11: 0.8003 S12: -0.6184 S13: 0.8274 REMARK 3 S21: -0.7662 S22: -0.0113 S23: -2.0371 REMARK 3 S31: -1.6521 S32: 0.5894 S33: -0.7891 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 519 A 532 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4687 26.1787 2.1749 REMARK 3 T TENSOR REMARK 3 T11: 0.0496 T22: -0.1104 REMARK 3 T33: -0.1780 T12: -0.0968 REMARK 3 T13: -0.0085 T23: 0.0397 REMARK 3 L TENSOR REMARK 3 L11: 5.0040 L22: 1.4597 REMARK 3 L33: 7.1826 L12: 1.4206 REMARK 3 L13: -1.7227 L23: -1.9297 REMARK 3 S TENSOR REMARK 3 S11: -0.1271 S12: 0.1243 S13: 0.1468 REMARK 3 S21: 0.5666 S22: 0.1978 S23: -0.0066 REMARK 3 S31: -0.4241 S32: 0.4106 S33: -0.0707 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 533 A 541 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0519 37.2979 12.6268 REMARK 3 T TENSOR REMARK 3 T11: 0.2945 T22: 0.1671 REMARK 3 T33: 0.2695 T12: 0.0106 REMARK 3 T13: -0.0186 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 18.2657 L22: 16.7273 REMARK 3 L33: 125.7785 L12: -14.1740 REMARK 3 L13: -12.5031 L23: 35.6154 REMARK 3 S TENSOR REMARK 3 S11: 0.1289 S12: -1.6888 S13: 0.7968 REMARK 3 S21: 0.9116 S22: 1.4310 S23: -0.3659 REMARK 3 S31: 1.0221 S32: 2.6420 S33: -1.5600 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 542 A 550 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3326 28.2507 -2.6440 REMARK 3 T TENSOR REMARK 3 T11: 0.1272 T22: -0.1709 REMARK 3 T33: -0.2590 T12: -0.2193 REMARK 3 T13: -0.0225 T23: 0.0413 REMARK 3 L TENSOR REMARK 3 L11: 11.1628 L22: 3.6891 REMARK 3 L33: 8.6895 L12: -2.5795 REMARK 3 L13: -1.9369 L23: -0.7172 REMARK 3 S TENSOR REMARK 3 S11: -0.1047 S12: 0.5413 S13: 0.5087 REMARK 3 S21: 0.1101 S22: -0.2106 S23: -0.0302 REMARK 3 S31: -1.1264 S32: 0.2120 S33: 0.3152 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 551 A 559 REMARK 3 ORIGIN FOR THE GROUP (A): 38.1795 22.9333 -0.2285 REMARK 3 T TENSOR REMARK 3 T11: -0.1071 T22: -0.0102 REMARK 3 T33: 0.0157 T12: -0.1284 REMARK 3 T13: -0.0770 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 74.2756 L22: 4.5784 REMARK 3 L33: 19.1045 L12: 4.9041 REMARK 3 L13: 3.8394 L23: -8.7152 REMARK 3 S TENSOR REMARK 3 S11: 0.3728 S12: -0.6687 S13: -0.8107 REMARK 3 S21: 0.9811 S22: -0.9627 S23: -0.4627 REMARK 3 S31: 0.6951 S32: 0.2992 S33: 0.5899 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 569 A 591 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5771 27.4327 0.0220 REMARK 3 T TENSOR REMARK 3 T11: -0.0668 T22: 0.5447 REMARK 3 T33: 0.2858 T12: -0.3610 REMARK 3 T13: 0.0000 T23: 0.0844 REMARK 3 L TENSOR REMARK 3 L11: 18.0502 L22: 11.6956 REMARK 3 L33: 6.5476 L12: -1.4648 REMARK 3 L13: 8.5547 L23: -4.5844 REMARK 3 S TENSOR REMARK 3 S11: -0.8341 S12: 0.9071 S13: 0.4792 REMARK 3 S21: -0.4189 S22: -0.0442 S23: -0.6852 REMARK 3 S31: -1.4659 S32: 1.3379 S33: 0.8782 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 592 A 611 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4846 15.8107 4.5444 REMARK 3 T TENSOR REMARK 3 T11: -0.0757 T22: 0.2794 REMARK 3 T33: 0.1436 T12: 0.0326 REMARK 3 T13: 0.0091 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 8.5074 L22: 10.5574 REMARK 3 L33: 12.3213 L12: 2.5629 REMARK 3 L13: 4.9986 L23: -0.2098 REMARK 3 S TENSOR REMARK 3 S11: -0.2793 S12: 0.4326 S13: -1.3496 REMARK 3 S21: 0.6045 S22: 0.5255 S23: -0.4640 REMARK 3 S31: 0.6685 S32: 2.1335 S33: -0.2462 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-05; 15-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : APS; ROTATING ANODE REMARK 200 BEAMLINE : 22-ID; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : .97925, .97936, .97164; 1.5418 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE SI(220) REMARK 200 CRYSTAL CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR; GRAPHITE REMARK 200 OPTICS : ROSENBAUM-ROCK VERTICAL FOCUSING REMARK 200 MIRROR; OSMIC CONFOCAL BLUE REMARK 200 MULTI-LAYER MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; RIGAKU REMARK 200 RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20993 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 30.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41200 REMARK 200 FOR SHELL : 3.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD, MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7, 20 % PEG 3350, 200 REMARK 280 MM MAGNESIUM ACETATE, 10% GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.20900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.94150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.20900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.94150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 167 REMARK 465 ALA A 168 REMARK 465 MET A 169 REMARK 465 SER A 170 REMARK 465 SER A 171 REMARK 465 SER A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 TYR A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 PRO A 178 REMARK 465 GLY A 179 REMARK 465 GLY A 180 REMARK 465 ASP A 255 REMARK 465 GLU A 256 REMARK 465 PRO A 257 REMARK 465 ALA A 258 REMARK 465 ASP A 259 REMARK 465 ASP A 260 REMARK 465 ASP A 261 REMARK 465 ALA A 262 REMARK 465 PRO A 263 REMARK 465 LEU A 264 REMARK 465 ALA A 265 REMARK 465 GLY A 266 REMARK 465 ASN A 267 REMARK 465 SER A 268 REMARK 465 GLY A 269 REMARK 465 ALA A 270 REMARK 465 GLU A 271 REMARK 465 ASP A 272 REMARK 465 GLY A 273 REMARK 465 GLY A 274 REMARK 465 ALA A 275 REMARK 465 GLU A 276 REMARK 465 ALA A 277 REMARK 465 GLN A 612 REMARK 465 GLU A 613 REMARK 465 THR A 614 REMARK 465 GLY A 615 REMARK 465 PHE A 616 REMARK 465 SER A 617 REMARK 465 ILE A 618 REMARK 465 THR A 619 REMARK 465 GLU A 620 REMARK 465 LEU A 621 REMARK 465 GLN A 622 REMARK 465 ARG A 623 REMARK 465 LYS A 624 REMARK 465 GLN A 625 REMARK 465 ALA A 626 REMARK 465 MET A 627 REMARK 465 LEU A 628 REMARK 465 ASN A 629 REMARK 465 ALA A 630 REMARK 465 SER A 631 REMARK 465 LYS A 632 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 561 CB CG CD CE NZ REMARK 470 ASP A 562 CB CG OD1 OD2 REMARK 470 ARG A 563 CB CG CD NE CZ NH1 NH2 REMARK 470 ASP A 564 CB CG OD1 OD2 REMARK 470 LEU A 565 CB CG CD1 CD2 REMARK 470 HIS A 566 CB CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 567 CB CG1 CG2 REMARK 470 SER A 568 CB OG REMARK 470 ILE A 569 CB CG1 CG2 CD1 REMARK 470 LYS A 570 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 580 OD1 ASP A 582 2.03 REMARK 500 SG CYS A 198 O HOH A 82 2.18 REMARK 500 OG1 THR A 507 OE1 GLN A 518 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 239 N - CA - C ANGL. DEV. = -18.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 238 -58.92 135.81 REMARK 500 GLU A 240 115.72 153.51 REMARK 500 SER A 279 43.72 35.95 REMARK 500 ARG A 317 66.72 -106.76 REMARK 500 GLU A 491 -176.80 117.22 REMARK 500 GLN A 513 126.80 130.87 REMARK 500 ALA A 514 70.56 -170.81 REMARK 500 HIS A 526 -15.69 83.92 REMARK 500 ASP A 562 -101.49 -64.64 REMARK 500 ARG A 563 136.14 108.24 REMARK 500 ASP A 564 66.94 69.92 REMARK 500 LEU A 565 -50.81 112.50 REMARK 500 HIS A 566 -136.32 -154.34 REMARK 500 VAL A 567 -86.68 -138.27 REMARK 500 SER A 568 102.56 -49.46 REMARK 500 LYS A 570 -105.78 -120.78 REMARK 500 ASN A 571 61.24 -61.65 REMARK 500 ARG A 577 -102.05 -63.59 REMARK 500 THR A 580 -129.84 -77.85 REMARK 500 LEU A 610 68.56 -115.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 239 GLU A 240 -51.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 2PZ1 A 170 632 UNP Q9NR80 ARHG4_HUMAN 137 599 SEQADV 2PZ1 GLY A 167 UNP Q9NR80 CLONING ARTIFACT SEQADV 2PZ1 ALA A 168 UNP Q9NR80 CLONING ARTIFACT SEQADV 2PZ1 MET A 169 UNP Q9NR80 CLONING ARTIFACT SEQRES 1 A 466 GLY ALA MET SER SER SER HIS HIS TYR SER HIS PRO GLY SEQRES 2 A 466 GLY GLY GLY GLU GLN LEU ALA ILE ASN GLU LEU ILE SER SEQRES 3 A 466 ASP GLY SER VAL VAL CYS ALA GLU ALA LEU TRP ASP HIS SEQRES 4 A 466 VAL THR MET ASP ASP GLN GLU LEU GLY PHE LYS ALA GLY SEQRES 5 A 466 ASP VAL ILE GLU VAL MET ASP ALA THR ASN ARG GLU TRP SEQRES 6 A 466 TRP TRP GLY ARG VAL ALA ASP GLY GLU GLY TRP PHE PRO SEQRES 7 A 466 ALA SER PHE VAL ARG LEU ARG VAL ASN GLN ASP GLU PRO SEQRES 8 A 466 ALA ASP ASP ASP ALA PRO LEU ALA GLY ASN SER GLY ALA SEQRES 9 A 466 GLU ASP GLY GLY ALA GLU ALA GLN SER SER LYS ASP GLN SEQRES 10 A 466 MET ARG THR ASN VAL ILE ASN GLU ILE LEU SER THR GLU SEQRES 11 A 466 ARG ASP TYR ILE LYS HIS LEU ARG ASP ILE CYS GLU GLY SEQRES 12 A 466 TYR VAL ARG GLN CYS ARG LYS ARG ALA ASP MET PHE SER SEQRES 13 A 466 GLU GLU GLN LEU ARG THR ILE PHE GLY ASN ILE GLU ASP SEQRES 14 A 466 ILE TYR ARG CYS GLN LYS ALA PHE VAL LYS ALA LEU GLU SEQRES 15 A 466 GLN ARG PHE ASN ARG GLU ARG PRO HIS LEU SER GLU LEU SEQRES 16 A 466 GLY ALA CYS PHE LEU GLU HIS GLN ALA ASP PHE GLN ILE SEQRES 17 A 466 TYR SER GLU TYR CYS ASN ASN HIS PRO ASN ALA CYS VAL SEQRES 18 A 466 GLU LEU SER ARG LEU THR LYS LEU SER LYS TYR VAL TYR SEQRES 19 A 466 PHE PHE GLU ALA CYS ARG LEU LEU GLN LYS MET ILE ASP SEQRES 20 A 466 ILE SER LEU ASP GLY PHE LEU LEU THR PRO VAL GLN LYS SEQRES 21 A 466 ILE CYS LYS TYR PRO LEU GLN LEU ALA GLU LEU LEU LYS SEQRES 22 A 466 TYR THR HIS PRO GLN HIS ARG ASP PHE LYS ASP VAL GLU SEQRES 23 A 466 ALA ALA LEU HIS ALA MET LYS ASN VAL ALA GLN LEU ILE SEQRES 24 A 466 ASN GLU ARG LYS ARG ARG LEU GLU ASN ILE ASP LYS ILE SEQRES 25 A 466 ALA GLN TRP GLN SER SER ILE GLU ASP TRP GLU GLY GLU SEQRES 26 A 466 ASP LEU LEU VAL ARG SER SER GLU LEU ILE TYR SER GLY SEQRES 27 A 466 GLU LEU THR ARG VAL THR GLN PRO GLN ALA LYS SER GLN SEQRES 28 A 466 GLN ARG MET PHE PHE LEU PHE ASP HIS GLN LEU ILE TYR SEQRES 29 A 466 CYS LYS LYS ASP LEU LEU ARG ARG ASP VAL LEU TYR TYR SEQRES 30 A 466 LYS GLY ARG LEU ASP MET ASP GLY LEU GLU VAL VAL ASP SEQRES 31 A 466 LEU GLU ASP GLY LYS ASP ARG ASP LEU HIS VAL SER ILE SEQRES 32 A 466 LYS ASN ALA PHE ARG LEU HIS ARG GLY ALA THR GLY ASP SEQRES 33 A 466 SER HIS LEU LEU CYS THR ARG LYS PRO GLU GLN LYS GLN SEQRES 34 A 466 ARG TRP LEU LYS ALA PHE ALA ARG GLU ARG GLU GLN VAL SEQRES 35 A 466 GLN LEU ASP GLN GLU THR GLY PHE SER ILE THR GLU LEU SEQRES 36 A 466 GLN ARG LYS GLN ALA MET LEU ASN ALA SER LYS FORMUL 2 HOH *100(H2 O) HELIX 1 1 ALA A 186 SER A 192 1 7 HELIX 2 2 SER A 280 TYR A 310 1 31 HELIX 3 3 TYR A 310 ARG A 317 1 8 HELIX 4 4 SER A 322 GLY A 331 1 10 HELIX 5 5 ASN A 332 PHE A 351 1 20 HELIX 6 6 ARG A 355 SER A 359 5 5 HELIX 7 7 LEU A 361 HIS A 368 1 8 HELIX 8 8 HIS A 368 GLN A 373 1 6 HELIX 9 9 ILE A 374 LYS A 394 1 21 HELIX 10 10 LEU A 395 LYS A 410 1 16 HELIX 11 11 SER A 415 TYR A 440 1 26 HELIX 12 12 ASP A 447 ILE A 485 1 39 HELIX 13 13 ASP A 492 SER A 497 1 6 HELIX 14 14 LYS A 590 LEU A 610 1 21 SHEET 1 A 5 GLY A 239 PRO A 244 0 SHEET 2 A 5 TRP A 231 VAL A 236 -1 N TRP A 232 O PHE A 243 SHEET 3 A 5 VAL A 220 ASP A 225 -1 N MET A 224 O TRP A 233 SHEET 4 A 5 VAL A 197 ALA A 201 -1 N VAL A 197 O VAL A 223 SHEET 5 A 5 VAL A 248 LEU A 250 -1 O ARG A 249 N GLU A 200 SHEET 1 B 7 LEU A 541 ASP A 548 0 SHEET 2 B 7 GLN A 527 LYS A 533 -1 N LEU A 528 O LEU A 547 SHEET 3 B 7 SER A 516 PHE A 524 -1 N PHE A 524 O GLN A 527 SHEET 4 B 7 LEU A 500 VAL A 509 -1 N ILE A 501 O LEU A 523 SHEET 5 B 7 SER A 583 THR A 588 -1 O CYS A 587 N THR A 507 SHEET 6 B 7 ASN A 571 HIS A 576 -1 N PHE A 573 O LEU A 586 SHEET 7 B 7 GLU A 553 ASP A 556 -1 N GLU A 553 O HIS A 576 CISPEP 1 GLN A 513 ALA A 514 0 -7.72 CRYST1 100.418 79.883 67.407 90.00 122.99 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009958 0.000000 0.006465 0.00000 SCALE2 0.000000 0.012518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017688 0.00000