HEADER LIGASE 17-MAY-07 2PZA TITLE NAD+ SYNTHETASE FROM BACILLUS ANTHRACIS WITH AMP + PPI AND MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: NH(3)-DEPENDENT NAD(+) SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.3.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 1392; SOURCE 4 GENE: NADE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS NAD+ SYNTHETASE, HIS-TAG, BACILLUS ANTHRACIS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR H.M.MCDONALD,P.S.PRUETT,C.DEIVANAYAGAM,I.I.PROTASEVICH,W.M.CARSON, AUTHOR 2 L.J.DELUCAS,W.J.BROUILLETTE,C.G.BROUILLETTE REVDAT 5 30-AUG-23 2PZA 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2PZA 1 VERSN REVDAT 3 24-FEB-09 2PZA 1 VERSN REVDAT 2 28-AUG-07 2PZA 1 AUTHOR REVDAT 1 31-JUL-07 2PZA 0 JRNL AUTH H.M.MCDONALD,P.S.PRUETT,C.DEIVANAYAGAM,I.I.PROTASEVICH, JRNL AUTH 2 W.M.CARSON,L.J.DELUCAS,W.J.BROUILLETTE,C.G.BROUILLETTE JRNL TITL STRUCTURAL ADAPTATION OF AN INTERACTING NON-NATIVE JRNL TITL 2 C-TERMINAL HELICAL EXTENSION REVEALED IN THE CRYSTAL JRNL TITL 3 STRUCTURE OF NAD(+) SYNTHETASE FROM BACILLUS ANTHRACIS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 891 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17642516 JRNL DOI 10.1107/S0907444907029769 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 343360.140 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 26091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2605 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3605 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 385 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.83000 REMARK 3 B22 (A**2) : 7.18000 REMARK 3 B33 (A**2) : -2.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.950 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.510 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.610 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.300 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 24.05 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : AMP.PAR REMARK 3 PARAMETER FILE 5 : POP.PAR REMARK 3 PARAMETER FILE 6 : GOL.PAR REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : AMP.TOP REMARK 3 TOPOLOGY FILE 5 : POP.TOP REMARK 3 TOPOLOGY FILE 6 : GOL.TOP REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PZA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28233 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 24.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.18700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2PZ8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 0.505 M AMMONIUM REMARK 280 SULFATE, 6% GLYCEROL, 100 MM MGCL2, 0.05% N-OCTYL-BETA-D- REMARK 280 GLUCOPYRANOSIDE, 100 MM HEPES, PH 7.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 53.52300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.18750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.52300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.18750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE FUNCTIONAL UNIT OF THE ENZYME IS A COMPACT HOMODIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 HIS A 283 REMARK 465 HIS A 284 REMARK 465 HIS B 280 REMARK 465 HIS B 281 REMARK 465 HIS B 282 REMARK 465 HIS B 283 REMARK 465 HIS B 284 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 209 N REMARK 480 ALA A 210 CA C REMARK 480 GLU A 215 N REMARK 480 LYS A 216 CA C REMARK 480 THR A 223 N REMARK 480 GLN A 261 N REMARK 480 VAL A 262 CA C REMARK 480 PRO A 263 CA C REMARK 480 ALA A 264 CA C REMARK 480 SER A 265 CA C REMARK 480 THR B 209 N REMARK 480 ALA B 210 CA C REMARK 480 GLU B 215 N REMARK 480 LYS B 216 CA C REMARK 480 THR B 223 N REMARK 480 GLN B 261 N REMARK 480 VAL B 262 CA C REMARK 480 PRO B 263 CA C REMARK 480 ALA B 264 CA C REMARK 480 SER B 265 CA C REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 83 -142.76 53.70 REMARK 500 ASP A 87 40.84 -102.11 REMARK 500 ASP A 211 65.10 37.20 REMARK 500 LYS A 216 49.27 -142.73 REMARK 500 LYS B 83 -105.71 60.79 REMARK 500 ASP B 124 56.46 25.92 REMARK 500 ASP B 211 66.30 36.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A6242 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD2 REMARK 620 2 GLU A 163 OE2 83.7 REMARK 620 3 AMP A4000 O1P 155.0 84.0 REMARK 620 4 POP A6000 O5 95.1 178.7 97.3 REMARK 620 5 POP A6000 O1 68.3 91.0 90.2 89.2 REMARK 620 6 HOH A6362 O 91.6 77.3 106.8 102.2 158.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A6243 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 209 O REMARK 620 2 AMP A4000 O3P 84.8 REMARK 620 3 POP A6000 O6 172.4 95.8 REMARK 620 4 POP A6000 O3 81.9 87.1 90.6 REMARK 620 5 HOH A6360 O 88.5 93.1 99.0 170.3 REMARK 620 6 HOH A6361 O 86.5 171.2 92.9 93.3 85.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B6241 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 51 OD2 REMARK 620 2 AMP B5000 O1P 165.8 REMARK 620 3 POP B7000 O1 83.7 95.0 REMARK 620 4 POP B7000 O5 96.8 97.4 96.6 REMARK 620 5 HOH B7112 O 88.4 91.5 170.7 89.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B6240 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 209 O REMARK 620 2 AMP B5000 O3P 86.0 REMARK 620 3 POP B7000 O3 88.3 87.5 REMARK 620 4 POP B7000 O6 173.4 88.8 95.5 REMARK 620 5 HOH B7110 O 89.7 77.7 165.2 85.2 REMARK 620 6 HOH B7111 O 97.2 171.6 100.3 87.4 94.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 6240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 6241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 6242 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 6243 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 5000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 4000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP B 7000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 6000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3308 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3309 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PZ8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH AMP-CPP. REMARK 900 RELATED ID: 2PZB RELATED DB: PDB DBREF 2PZA A 1 272 UNP Q81RP3 NADE_BACAN 1 272 DBREF 2PZA B 1 272 UNP Q81RP3 NADE_BACAN 1 272 SEQADV 2PZA LEU A 273 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA ALA A 274 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA ALA A 275 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA ALA A 276 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA LEU A 277 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA GLU A 278 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA HIS A 279 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA HIS A 280 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA HIS A 281 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA HIS A 282 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA HIS A 283 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA HIS A 284 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA LEU B 273 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA ALA B 274 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA ALA B 275 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA ALA B 276 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA LEU B 277 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA GLU B 278 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA HIS B 279 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA HIS B 280 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA HIS B 281 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA HIS B 282 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA HIS B 283 UNP Q81RP3 CLONING ARTIFACT SEQADV 2PZA HIS B 284 UNP Q81RP3 CLONING ARTIFACT SEQRES 1 A 284 MET THR LEU GLN GLU GLN ILE MET LYS ALA LEU HIS VAL SEQRES 2 A 284 GLN PRO VAL ILE ASP PRO LYS ALA GLU ILE ARG LYS ARG SEQRES 3 A 284 VAL ASP PHE LEU LYS ASP TYR VAL LYS LYS THR GLY ALA SEQRES 4 A 284 LYS GLY PHE VAL LEU GLY ILE SER GLY GLY GLN ASP SER SEQRES 5 A 284 THR LEU ALA GLY ARG LEU ALA GLN LEU ALA VAL GLU GLU SEQRES 6 A 284 ILE ARG ASN GLU GLY GLY ASN ALA THR PHE ILE ALA VAL SEQRES 7 A 284 ARG LEU PRO TYR LYS VAL GLN LYS ASP GLU ASP ASP ALA SEQRES 8 A 284 GLN LEU ALA LEU GLN PHE ILE GLN ALA ASP GLN SER VAL SEQRES 9 A 284 ALA PHE ASP ILE ALA SER THR VAL ASP ALA PHE SER ASN SEQRES 10 A 284 GLN TYR GLU ASN LEU LEU ASP GLU SER LEU THR ASP PHE SEQRES 11 A 284 ASN LYS GLY ASN VAL LYS ALA ARG ILE ARG MET VAL THR SEQRES 12 A 284 GLN TYR ALA ILE GLY GLY GLN LYS GLY LEU LEU VAL ILE SEQRES 13 A 284 GLY THR ASP HIS ALA ALA GLU ALA VAL THR GLY PHE PHE SEQRES 14 A 284 THR LYS PHE GLY ASP GLY GLY ALA ASP LEU LEU PRO LEU SEQRES 15 A 284 THR GLY LEU THR LYS ARG GLN GLY ARG ALA LEU LEU GLN SEQRES 16 A 284 GLU LEU GLY ALA ASP GLU ARG LEU TYR LEU LYS MET PRO SEQRES 17 A 284 THR ALA ASP LEU LEU ASP GLU LYS PRO GLY GLN ALA ASP SEQRES 18 A 284 GLU THR GLU LEU GLY ILE THR TYR ASP GLN LEU ASP ASP SEQRES 19 A 284 TYR LEU GLU GLY LYS THR VAL PRO ALA ASP VAL ALA GLU SEQRES 20 A 284 LYS ILE GLU LYS ARG TYR THR VAL SER GLU HIS LYS ARG SEQRES 21 A 284 GLN VAL PRO ALA SER MET PHE ASP ASP TRP TRP LYS LEU SEQRES 22 A 284 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 284 MET THR LEU GLN GLU GLN ILE MET LYS ALA LEU HIS VAL SEQRES 2 B 284 GLN PRO VAL ILE ASP PRO LYS ALA GLU ILE ARG LYS ARG SEQRES 3 B 284 VAL ASP PHE LEU LYS ASP TYR VAL LYS LYS THR GLY ALA SEQRES 4 B 284 LYS GLY PHE VAL LEU GLY ILE SER GLY GLY GLN ASP SER SEQRES 5 B 284 THR LEU ALA GLY ARG LEU ALA GLN LEU ALA VAL GLU GLU SEQRES 6 B 284 ILE ARG ASN GLU GLY GLY ASN ALA THR PHE ILE ALA VAL SEQRES 7 B 284 ARG LEU PRO TYR LYS VAL GLN LYS ASP GLU ASP ASP ALA SEQRES 8 B 284 GLN LEU ALA LEU GLN PHE ILE GLN ALA ASP GLN SER VAL SEQRES 9 B 284 ALA PHE ASP ILE ALA SER THR VAL ASP ALA PHE SER ASN SEQRES 10 B 284 GLN TYR GLU ASN LEU LEU ASP GLU SER LEU THR ASP PHE SEQRES 11 B 284 ASN LYS GLY ASN VAL LYS ALA ARG ILE ARG MET VAL THR SEQRES 12 B 284 GLN TYR ALA ILE GLY GLY GLN LYS GLY LEU LEU VAL ILE SEQRES 13 B 284 GLY THR ASP HIS ALA ALA GLU ALA VAL THR GLY PHE PHE SEQRES 14 B 284 THR LYS PHE GLY ASP GLY GLY ALA ASP LEU LEU PRO LEU SEQRES 15 B 284 THR GLY LEU THR LYS ARG GLN GLY ARG ALA LEU LEU GLN SEQRES 16 B 284 GLU LEU GLY ALA ASP GLU ARG LEU TYR LEU LYS MET PRO SEQRES 17 B 284 THR ALA ASP LEU LEU ASP GLU LYS PRO GLY GLN ALA ASP SEQRES 18 B 284 GLU THR GLU LEU GLY ILE THR TYR ASP GLN LEU ASP ASP SEQRES 19 B 284 TYR LEU GLU GLY LYS THR VAL PRO ALA ASP VAL ALA GLU SEQRES 20 B 284 LYS ILE GLU LYS ARG TYR THR VAL SER GLU HIS LYS ARG SEQRES 21 B 284 GLN VAL PRO ALA SER MET PHE ASP ASP TRP TRP LYS LEU SEQRES 22 B 284 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET MG A6242 1 HET MG A6243 1 HET AMP A4000 23 HET POP A6000 9 HET GOL A3309 6 HET MG B6240 1 HET MG B6241 1 HET AMP B5000 23 HET POP B7000 9 HET GOL B3308 6 HETNAM MG MAGNESIUM ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM POP PYROPHOSPHATE 2- HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 4(MG 2+) FORMUL 5 AMP 2(C10 H14 N5 O7 P) FORMUL 6 POP 2(H2 O7 P2 2-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 13 HOH *231(H2 O) HELIX 1 1 THR A 2 LEU A 11 1 10 HELIX 2 2 ASP A 18 GLY A 38 1 21 HELIX 3 3 GLY A 49 GLU A 69 1 21 HELIX 4 4 ASP A 87 GLN A 99 1 13 HELIX 5 5 ILE A 108 ASP A 124 1 17 HELIX 6 6 THR A 128 GLY A 152 1 25 HELIX 7 7 HIS A 160 VAL A 165 1 6 HELIX 8 8 THR A 186 LEU A 197 1 12 HELIX 9 9 ASP A 200 LYS A 206 1 7 HELIX 10 10 ALA A 220 GLY A 226 1 7 HELIX 11 11 THR A 228 GLU A 237 1 10 HELIX 12 12 PRO A 242 SER A 256 1 15 HELIX 13 13 GLU A 257 GLN A 261 5 5 HELIX 14 14 ASP A 269 ALA A 274 1 6 HELIX 15 15 THR B 2 LEU B 11 1 10 HELIX 16 16 ASP B 18 THR B 37 1 20 HELIX 17 17 GLY B 49 GLU B 69 1 21 HELIX 18 18 ASP B 87 GLN B 99 1 13 HELIX 19 19 ILE B 108 LEU B 123 1 16 HELIX 20 20 THR B 128 GLY B 152 1 25 HELIX 21 21 HIS B 160 VAL B 165 1 6 HELIX 22 22 THR B 186 LEU B 197 1 12 HELIX 23 23 ASP B 200 LYS B 206 1 7 HELIX 24 24 ALA B 220 GLY B 226 1 7 HELIX 25 25 THR B 228 GLU B 237 1 10 HELIX 26 26 PRO B 242 SER B 256 1 15 HELIX 27 27 GLU B 257 GLN B 261 5 5 HELIX 28 28 ASP B 269 ALA B 274 1 6 SHEET 1 A 4 GLN A 102 ALA A 105 0 SHEET 2 A 4 THR A 74 ARG A 79 1 N ALA A 77 O GLN A 102 SHEET 3 A 4 GLY A 41 GLY A 45 1 N PHE A 42 O THR A 74 SHEET 4 A 4 LEU A 153 VAL A 155 1 O LEU A 154 N GLY A 41 SHEET 1 B 4 GLN B 102 ALA B 105 0 SHEET 2 B 4 THR B 74 ARG B 79 1 N ARG B 79 O VAL B 104 SHEET 3 B 4 GLY B 41 GLY B 45 1 N LEU B 44 O VAL B 78 SHEET 4 B 4 LEU B 154 VAL B 155 1 O LEU B 154 N GLY B 41 LINK OD2 ASP A 51 MG MG A6242 1555 1555 2.39 LINK OE2 GLU A 163 MG MG A6242 1555 1555 2.13 LINK O THR A 209 MG MG A6243 1555 1555 2.07 LINK O1P AMP A4000 MG MG A6242 1555 1555 2.10 LINK O3P AMP A4000 MG MG A6243 1555 1555 1.97 LINK O5 POP A6000 MG MG A6242 1555 1555 2.05 LINK O1 POP A6000 MG MG A6242 1555 1555 2.15 LINK O6 POP A6000 MG MG A6243 1555 1555 2.06 LINK O3 POP A6000 MG MG A6243 1555 1555 2.20 LINK MG MG A6242 O HOH A6362 1555 1555 2.10 LINK MG MG A6243 O HOH A6360 1555 1555 2.15 LINK MG MG A6243 O HOH A6361 1555 1555 1.99 LINK OD2 ASP B 51 MG MG B6241 1555 1555 2.18 LINK O THR B 209 MG MG B6240 1555 1555 2.03 LINK O3P AMP B5000 MG MG B6240 1555 1555 2.12 LINK O1P AMP B5000 MG MG B6241 1555 1555 1.88 LINK MG MG B6240 O3 POP B7000 1555 1555 2.07 LINK MG MG B6240 O6 POP B7000 1555 1555 2.03 LINK MG MG B6240 O HOH B7110 1555 1555 1.98 LINK MG MG B6240 O HOH B7111 1555 1555 1.79 LINK MG MG B6241 O1 POP B7000 1555 1555 2.00 LINK MG MG B6241 O5 POP B7000 1555 1555 2.05 LINK MG MG B6241 O HOH B7112 1555 1555 2.15 SITE 1 AC1 5 THR B 209 AMP B5000 POP B7000 HOH B7110 SITE 2 AC1 5 HOH B7111 SITE 1 AC2 5 ASP B 51 GLU B 163 AMP B5000 POP B7000 SITE 2 AC2 5 HOH B7112 SITE 1 AC3 5 ASP A 51 GLU A 163 AMP A4000 POP A6000 SITE 2 AC3 5 HOH A6362 SITE 1 AC4 5 THR A 209 AMP A4000 POP A6000 HOH A6360 SITE 2 AC4 5 HOH A6361 SITE 1 AC5 23 LEU B 44 GLY B 45 ILE B 46 SER B 47 SITE 2 AC5 23 SER B 52 ARG B 79 LEU B 80 GLN B 85 SITE 3 AC5 23 ARG B 140 THR B 158 GLU B 163 ASP B 174 SITE 4 AC5 23 THR B 209 ALA B 210 MG B6240 MG B6241 SITE 5 AC5 23 POP B7000 HOH B7003 HOH B7007 HOH B7008 SITE 6 AC5 23 HOH B7019 HOH B7110 HOH B7112 SITE 1 AC6 23 LEU A 44 GLY A 45 ILE A 46 SER A 47 SITE 2 AC6 23 SER A 52 ARG A 79 LEU A 80 GLN A 85 SITE 3 AC6 23 ARG A 140 THR A 158 GLU A 163 ASP A 174 SITE 4 AC6 23 THR A 209 ALA A 210 POP A6000 MG A6242 SITE 5 AC6 23 MG A6243 HOH A6247 HOH A6252 HOH A6258 SITE 6 AC6 23 HOH A6275 HOH A6285 HOH A6360 SITE 1 AC7 17 SER B 47 GLY B 49 GLN B 50 ASP B 51 SITE 2 AC7 17 SER B 52 GLU B 163 LYS B 187 PRO B 208 SITE 3 AC7 17 THR B 209 AMP B5000 MG B6240 MG B6241 SITE 4 AC7 17 HOH B7007 HOH B7024 HOH B7110 HOH B7111 SITE 5 AC7 17 HOH B7112 SITE 1 AC8 14 SER A 47 GLY A 49 GLN A 50 ASP A 51 SITE 2 AC8 14 SER A 52 GLU A 163 LYS A 187 PRO A 208 SITE 3 AC8 14 THR A 209 AMP A4000 MG A6242 MG A6243 SITE 4 AC8 14 HOH A6278 HOH A6361 SITE 1 AC9 8 TYR B 82 VAL B 84 GLN B 85 LYS B 86 SITE 2 AC9 8 ASP B 211 HOH B7004 HOH B7029 HOH B7054 SITE 1 BC1 7 TYR A 82 VAL A 84 GLN A 85 LYS A 86 SITE 2 BC1 7 ASP A 211 HOH A6296 HOH A6318 CRYST1 107.046 96.375 68.612 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009342 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014575 0.00000