HEADER HYDROLASE 18-MAY-07 2PZH TITLE YBGC THIOESTERASE (HP0496) FROM HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN HP_0496; COMPND 3 CHAIN: A, C, D, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 GENE: HP0496; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO KEYWDS LIPID, ACYL-COA, BACTERIAL MEMBRANE, TOL-PAL SYSTEM, THIOESTERASE, KEYWDS 2 HOT-DOG FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ANGELINI,L.CENDRON,S.GONCALVES,G.ZANOTTI,L.TERRADOT REVDAT 5 30-AUG-23 2PZH 1 SEQADV REVDAT 4 13-JUL-11 2PZH 1 VERSN REVDAT 3 24-FEB-09 2PZH 1 VERSN REVDAT 2 05-AUG-08 2PZH 1 JRNL REVDAT 1 08-APR-08 2PZH 0 JRNL AUTH A.ANGELINI,L.CENDRON,S.GONCALVES,G.ZANOTTI,L.TERRADOT JRNL TITL STRUCTURAL AND ENZYMATIC CHARACTERIZATION OF HP0496, A YBGC JRNL TITL 2 THIOESTERASE FROM HELICOBACTER PYLORI. JRNL REF PROTEINS V. 72 1212 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18338382 JRNL DOI 10.1002/PROT.22014 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.C.DILLON,A.BATEMAN REMARK 1 TITL THE HOTDOG FOLD: WRAPPING UP A SUPERFAMILY OF THIOESTERASES REMARK 1 TITL 2 AND DEHYDRATASES REMARK 1 REF BMC BIOINFORMATICS V. 59 109 2004 REMARK 1 REFN ESSN 1471-2105 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.M.BENNING,G.WESEMBERG,R.LIU,K.L.TAYLOR,D.DUNWAY-MARIANO, REMARK 1 AUTH 2 H.M.HOLDEN REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF 4-HYDROXYBENZOYL-COA REMARK 1 TITL 2 THIOESTERASE FROM PSEUDOMONAS SP. STRAIN CBS-3 REMARK 1 REF J.BIOL.CHEM. V. 273 33572 1998 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 50627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2686 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3084 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4419 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.542 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4557 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6154 ; 1.175 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 539 ; 5.673 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;39.319 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 817 ;14.311 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;11.132 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 666 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3476 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2166 ; 0.251 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3216 ; 0.324 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 566 ; 0.191 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.274 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.236 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2756 ; 1.107 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4383 ; 1.747 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2002 ; 1.231 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1766 ; 1.770 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C D B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 132 5 REMARK 3 1 C 1 C 132 5 REMARK 3 1 D 1 D 132 5 REMARK 3 1 B 1 B 132 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 526 ; .26 ; .50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 526 ; .27 ; .50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 526 ; .21 ; .50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 526 ; .30 ; .50 REMARK 3 LOOSE POSITIONAL 1 A (A): 560 ; .76 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 560 ; .76 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 D (A): 560 ; .67 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 560 ; .75 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 526 ; 1.23 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 526 ; 1.62 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 526 ; 1.13 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 526 ; 2.85 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 560 ; 1.79 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 560 ; 2.18 ; 10.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 560 ; 1.72 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 560 ; 3.68 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042958. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53355 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1S5U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS, 20% ETHANOL, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.93000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.64400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.60300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.64400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.93000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.60300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE HOMO-TETRAMER (CHAINS A,B,C, REMARK 300 D) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 133 REMARK 465 THR C -1 REMARK 465 ILE C 133 REMARK 465 THR D -1 REMARK 465 ILE D 133 REMARK 465 THR B -1 REMARK 465 ILE B 133 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB HIS B 0 O HOH B 217 1.89 REMARK 500 N THR A -1 O HOH A 205 1.91 REMARK 500 O HOH A 187 O HOH A 207 1.96 REMARK 500 O ASN B 42 NH2 ARG B 114 2.07 REMARK 500 CG HIS B 0 O HOH B 217 2.09 REMARK 500 O HOH A 155 O HOH A 207 2.15 REMARK 500 N HIS B 0 O HOH B 206 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 187 O HOH B 216 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 0 178.29 64.15 REMARK 500 PRO A 40 45.35 -80.31 REMARK 500 GLU A 44 32.59 -141.26 REMARK 500 PHE A 57 -131.77 -118.98 REMARK 500 PRO C 40 45.35 -74.64 REMARK 500 GLU C 44 35.58 -144.46 REMARK 500 PHE C 57 -132.92 -115.31 REMARK 500 PRO D 40 37.81 -78.83 REMARK 500 PHE D 57 -135.46 -113.00 REMARK 500 ARG D 114 -94.85 -34.95 REMARK 500 SER D 115 -70.82 -31.94 REMARK 500 PRO B 40 44.50 -80.04 REMARK 500 GLU B 43 -74.79 -26.84 REMARK 500 PHE B 57 -136.73 -121.60 REMARK 500 LEU B 94 -3.17 82.59 REMARK 500 TYR B 117 18.97 59.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LO7 RELATED DB: PDB REMARK 900 4-HYDROXYBENZOYL COA THIOESTERASE REMARK 900 RELATED ID: 1S5U RELATED DB: PDB REMARK 900 YBGC PROTEIN FROM E. COLI DBREF 2PZH A 1 133 UNP P94842 Y496_HELPY 1 133 DBREF 2PZH C 1 133 UNP P94842 Y496_HELPY 1 133 DBREF 2PZH D 1 133 UNP P94842 Y496_HELPY 1 133 DBREF 2PZH B 1 133 UNP P94842 Y496_HELPY 1 133 SEQADV 2PZH THR A -1 UNP P94842 EXPRESSION TAG SEQADV 2PZH HIS A 0 UNP P94842 EXPRESSION TAG SEQADV 2PZH THR C -1 UNP P94842 EXPRESSION TAG SEQADV 2PZH HIS C 0 UNP P94842 EXPRESSION TAG SEQADV 2PZH THR D -1 UNP P94842 EXPRESSION TAG SEQADV 2PZH HIS D 0 UNP P94842 EXPRESSION TAG SEQADV 2PZH THR B -1 UNP P94842 EXPRESSION TAG SEQADV 2PZH HIS B 0 UNP P94842 EXPRESSION TAG SEQRES 1 A 135 THR HIS MET ARG CYS ARG VAL TYR TYR GLU ASP THR ASP SEQRES 2 A 135 SER GLU GLY VAL VAL TYR HIS ALA ASN TYR LEU LYS TYR SEQRES 3 A 135 CYS GLU ARG ALA ARG SER GLU PHE PHE PHE LYS GLN ASN SEQRES 4 A 135 VAL LEU PRO GLU ASN GLU GLU GLY VAL PHE VAL ILE ARG SEQRES 5 A 135 SER ILE LYS ALA ASP PHE PHE THR PRO ALA SER LEU GLY SEQRES 6 A 135 GLN VAL LEU GLU ILE ARG THR GLN ILE LYS GLU LEU ARG SEQRES 7 A 135 LYS VAL PHE VAL VAL LEU PHE GLN GLU ILE TYR CYS ILE SEQRES 8 A 135 GLN ASN ALA SER LEU GLU PRO MET LYS PRO PHE LYS VAL SEQRES 9 A 135 PHE ALA SER GLU ILE LYS PHE GLY PHE VAL ASN ARG SER SEQRES 10 A 135 THR TYR SER PRO ILE ALA ILE PRO LYS LEU PHE LYS GLU SEQRES 11 A 135 LEU LEU ASN ALA ILE SEQRES 1 C 135 THR HIS MET ARG CYS ARG VAL TYR TYR GLU ASP THR ASP SEQRES 2 C 135 SER GLU GLY VAL VAL TYR HIS ALA ASN TYR LEU LYS TYR SEQRES 3 C 135 CYS GLU ARG ALA ARG SER GLU PHE PHE PHE LYS GLN ASN SEQRES 4 C 135 VAL LEU PRO GLU ASN GLU GLU GLY VAL PHE VAL ILE ARG SEQRES 5 C 135 SER ILE LYS ALA ASP PHE PHE THR PRO ALA SER LEU GLY SEQRES 6 C 135 GLN VAL LEU GLU ILE ARG THR GLN ILE LYS GLU LEU ARG SEQRES 7 C 135 LYS VAL PHE VAL VAL LEU PHE GLN GLU ILE TYR CYS ILE SEQRES 8 C 135 GLN ASN ALA SER LEU GLU PRO MET LYS PRO PHE LYS VAL SEQRES 9 C 135 PHE ALA SER GLU ILE LYS PHE GLY PHE VAL ASN ARG SER SEQRES 10 C 135 THR TYR SER PRO ILE ALA ILE PRO LYS LEU PHE LYS GLU SEQRES 11 C 135 LEU LEU ASN ALA ILE SEQRES 1 D 135 THR HIS MET ARG CYS ARG VAL TYR TYR GLU ASP THR ASP SEQRES 2 D 135 SER GLU GLY VAL VAL TYR HIS ALA ASN TYR LEU LYS TYR SEQRES 3 D 135 CYS GLU ARG ALA ARG SER GLU PHE PHE PHE LYS GLN ASN SEQRES 4 D 135 VAL LEU PRO GLU ASN GLU GLU GLY VAL PHE VAL ILE ARG SEQRES 5 D 135 SER ILE LYS ALA ASP PHE PHE THR PRO ALA SER LEU GLY SEQRES 6 D 135 GLN VAL LEU GLU ILE ARG THR GLN ILE LYS GLU LEU ARG SEQRES 7 D 135 LYS VAL PHE VAL VAL LEU PHE GLN GLU ILE TYR CYS ILE SEQRES 8 D 135 GLN ASN ALA SER LEU GLU PRO MET LYS PRO PHE LYS VAL SEQRES 9 D 135 PHE ALA SER GLU ILE LYS PHE GLY PHE VAL ASN ARG SER SEQRES 10 D 135 THR TYR SER PRO ILE ALA ILE PRO LYS LEU PHE LYS GLU SEQRES 11 D 135 LEU LEU ASN ALA ILE SEQRES 1 B 135 THR HIS MET ARG CYS ARG VAL TYR TYR GLU ASP THR ASP SEQRES 2 B 135 SER GLU GLY VAL VAL TYR HIS ALA ASN TYR LEU LYS TYR SEQRES 3 B 135 CYS GLU ARG ALA ARG SER GLU PHE PHE PHE LYS GLN ASN SEQRES 4 B 135 VAL LEU PRO GLU ASN GLU GLU GLY VAL PHE VAL ILE ARG SEQRES 5 B 135 SER ILE LYS ALA ASP PHE PHE THR PRO ALA SER LEU GLY SEQRES 6 B 135 GLN VAL LEU GLU ILE ARG THR GLN ILE LYS GLU LEU ARG SEQRES 7 B 135 LYS VAL PHE VAL VAL LEU PHE GLN GLU ILE TYR CYS ILE SEQRES 8 B 135 GLN ASN ALA SER LEU GLU PRO MET LYS PRO PHE LYS VAL SEQRES 9 B 135 PHE ALA SER GLU ILE LYS PHE GLY PHE VAL ASN ARG SER SEQRES 10 B 135 THR TYR SER PRO ILE ALA ILE PRO LYS LEU PHE LYS GLU SEQRES 11 B 135 LEU LEU ASN ALA ILE FORMUL 5 HOH *295(H2 O) HELIX 1 1 TYR A 6 THR A 10 5 5 HELIX 2 2 ALA A 19 LYS A 35 1 17 HELIX 3 3 PRO A 123 ALA A 132 1 10 HELIX 4 4 TYR C 6 THR C 10 5 5 HELIX 5 5 ALA C 19 GLN C 36 1 18 HELIX 6 6 PRO C 123 ALA C 132 1 10 HELIX 7 7 TYR D 6 THR D 10 5 5 HELIX 8 8 ALA D 19 GLN D 36 1 18 HELIX 9 9 PRO D 123 ALA D 132 1 10 HELIX 10 10 TYR B 6 THR B 10 5 5 HELIX 11 11 ALA B 19 LYS B 35 1 17 HELIX 12 12 PRO B 123 ALA B 132 1 10 SHEET 1 A 6 MET A 1 ARG A 4 0 SHEET 2 A 6 VAL A 65 LEU A 75 -1 O LEU A 66 N CYS A 3 SHEET 3 A 6 PHE A 79 GLN A 90 -1 O TYR A 87 N GLU A 67 SHEET 4 A 6 PHE A 100 VAL A 112 -1 O VAL A 102 N ILE A 86 SHEET 5 A 6 GLY A 45 PHE A 56 -1 N ARG A 50 O LYS A 108 SHEET 6 A 6 PRO A 119 ILE A 120 0 SHEET 1 B 8 GLU A 41 ASN A 42 0 SHEET 2 B 8 GLY A 45 PHE A 56 -1 O GLY A 45 N ASN A 42 SHEET 3 B 8 PHE A 100 VAL A 112 -1 O LYS A 108 N ARG A 50 SHEET 4 B 8 GLY B 45 PHE B 56 0 SHEET 5 B 8 PHE B 100 ASN B 113 -1 O LYS B 108 N ARG B 50 SHEET 6 B 8 PHE B 79 GLN B 90 -1 N ILE B 86 O VAL B 102 SHEET 7 B 8 VAL B 65 LEU B 75 -1 N GLU B 74 O VAL B 81 SHEET 8 B 8 MET B 1 ARG B 4 -1 N CYS B 3 O LEU B 66 SHEET 1 C10 MET C 1 ARG C 4 0 SHEET 2 C10 VAL C 65 LEU C 75 -1 O LEU C 66 N CYS C 3 SHEET 3 C10 PHE C 79 GLN C 90 -1 O TYR C 87 N GLU C 67 SHEET 4 C10 PHE C 100 VAL C 112 -1 O PHE C 103 N ILE C 86 SHEET 5 C10 GLY C 45 PHE C 56 -1 N VAL C 48 O GLY C 110 SHEET 6 C10 GLY D 45 PHE D 56 -1 O ALA D 54 N ILE C 52 SHEET 7 C10 PHE D 100 ASN D 113 -1 O LYS D 108 N ARG D 50 SHEET 8 C10 PHE D 79 GLN D 90 -1 N ILE D 86 O VAL D 102 SHEET 9 C10 VAL D 65 LEU D 75 -1 N ARG D 69 O GLU D 85 SHEET 10 C10 MET D 1 ARG D 4 -1 N MET D 1 O ILE D 68 SHEET 1 D 5 GLU C 41 ASN C 42 0 SHEET 2 D 5 GLY C 45 PHE C 56 -1 O GLY C 45 N ASN C 42 SHEET 3 D 5 GLY D 45 PHE D 56 -1 O ALA D 54 N ILE C 52 SHEET 4 D 5 PHE D 100 ASN D 113 -1 O LYS D 108 N ARG D 50 SHEET 5 D 5 SER D 118 PRO D 119 -1 O SER D 118 N ASN D 113 CRYST1 49.860 99.206 107.288 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020056 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009321 0.00000