HEADER PROTEIN BINDING 18-MAY-07 2PZO OBSLTE 19-AUG-08 2PZO 3E2U TITLE CRYSTAL STRUCTURE OF THE ZINC-KNUCKLE 2 DOMAIN OF HUMAN TITLE 2 CLIP-170 IN COMPLEX WITH CAP-GLY DOMAIN OF HUMAN DYNACTIN- TITLE 3 1 (P150-GLUED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNACTIN-1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: 150 KDA DYNEIN-ASSOCIATED POLYPEPTIDE, DP-150, COMPND 5 DAP-150, P150-GLUED, P135; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAP-GLY DOMAIN-CONTAINING LINKER PROTEIN 1; COMPND 10 CHAIN: E, F, G, H; COMPND 11 SYNONYM: RESTIN, CYTOPLASMIC LINKER PROTEIN 170 ALPHA-2, COMPND 12 CLIP-170, REED-STERNBERG INTERMEDIATE FILAMENT-ASSOCIATED COMPND 13 PROTEIN, CYTOPLASMIC LINKER PROTEIN 1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: DCTN1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 GENE: CLIP1, CYLN1, RSN; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PETG20 MTA KEYWDS STRUCTURAL PROTEIN MICROTUBULE BINDING, DYNACTIN, KEYWDS 2 CYTOSKELETON ASSOCIATED PROTEIN, P150GLUED, CLIP-170/RESTIN, KEYWDS 3 +TIP PROTEIN COMPLEX STRUCTURE, ZINC-KNUCKLE, KEYWDS 4 AUTOINHIBITION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.WEISBRICH,S.HONNAPPA,M.O.STEINMETZ REVDAT 3 19-AUG-08 2PZO 1 OBSLTE REVDAT 2 16-OCT-07 2PZO 1 JRNL REVDAT 1 11-SEP-07 2PZO 0 JRNL AUTH A.WEISBRICH,S.HONNAPPA,R.JAUSSI,O.OKHRIMENKO, JRNL AUTH 2 D.FREY,I.JELESAROV,A.AKHMANOVA,M.O.STEINMETZ JRNL TITL STRUCTURE-FUNCTION RELATIONSHIP OF CAP-GLY DOMAINS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 14 959 2007 JRNL REFN US ISSN 1545-9993 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 16044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.273 REMARK 3 R VALUE (WORKING SET) : 0.270 REMARK 3 FREE R VALUE : 0.332 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 857 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1182 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 3020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.08000 REMARK 3 B22 (A**2) : -2.57000 REMARK 3 B33 (A**2) : 4.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.631 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.382 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.332 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.267 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.881 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.815 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3034 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4085 ; 1.404 ; 1.911 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 6.569 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;34.091 ;23.245 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 485 ;18.021 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;19.840 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 428 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2339 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1378 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2005 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 144 ; 0.192 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1886 ; 1.847 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2955 ; 3.217 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1301 ; 5.028 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1130 ; 6.905 ; 6.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 0 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 0 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2PZO COMPLIES WITH FORMAT V. 3.1, 01-AUG-2007 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE RCSB ID CODE IS RCSB042965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-2006 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0393 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16902 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2HKQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M TRISODIUM CITRATE, 0.1M REMARK 280 HEPES, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,1/2+Z REMARK 290 3555 -X,Y,1/2-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 1/2+X,1/2+Y,Z REMARK 290 6555 1/2-X,1/2-Y,1/2+Z REMARK 290 7555 1/2-X,1/2+Y,1/2-Z REMARK 290 8555 1/2+X,1/2-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.95850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.95850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.05100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.07850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.05100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.07850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.95850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.05100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.07850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.95850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.05100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.07850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSEQI REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 HIS A 17 REMARK 465 MET A 18 REMARK 465 SER A 19 REMARK 465 ALA A 20 REMARK 465 GLU A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 ARG A 25 REMARK 465 GLU A 98 REMARK 465 ASP A 99 REMARK 465 GLY A 100 REMARK 465 ALA A 101 REMARK 465 ASP A 102 REMARK 465 THR A 103 REMARK 465 THR A 104 REMARK 465 SER A 105 REMARK 465 PRO A 106 REMARK 465 GLU A 107 REMARK 465 THR A 108 REMARK 465 PRO A 109 REMARK 465 ASP A 110 REMARK 465 SER A 111 REMARK 465 GLY B 15 REMARK 465 SER B 16 REMARK 465 HIS B 17 REMARK 465 MET B 18 REMARK 465 SER B 19 REMARK 465 ALA B 20 REMARK 465 GLU B 21 REMARK 465 ALA B 22 REMARK 465 SER B 23 REMARK 465 ALA B 24 REMARK 465 ARG B 25 REMARK 465 GLU B 98 REMARK 465 ASP B 99 REMARK 465 GLY B 100 REMARK 465 ALA B 101 REMARK 465 ASP B 102 REMARK 465 THR B 103 REMARK 465 THR B 104 REMARK 465 SER B 105 REMARK 465 PRO B 106 REMARK 465 GLU B 107 REMARK 465 THR B 108 REMARK 465 PRO B 109 REMARK 465 ASP B 110 REMARK 465 SER B 111 REMARK 465 GLY C 15 REMARK 465 SER C 16 REMARK 465 HIS C 17 REMARK 465 MET C 18 REMARK 465 SER C 19 REMARK 465 ALA C 20 REMARK 465 GLU C 21 REMARK 465 ALA C 22 REMARK 465 SER C 23 REMARK 465 ALA C 24 REMARK 465 ARG C 25 REMARK 465 GLU C 98 REMARK 465 ASP C 99 REMARK 465 GLY C 100 REMARK 465 ALA C 101 REMARK 465 ASP C 102 REMARK 465 THR C 103 REMARK 465 THR C 104 REMARK 465 SER C 105 REMARK 465 PRO C 106 REMARK 465 GLU C 107 REMARK 465 THR C 108 REMARK 465 PRO C 109 REMARK 465 ASP C 110 REMARK 465 SER C 111 REMARK 465 GLY D 15 REMARK 465 SER D 16 REMARK 465 HIS D 17 REMARK 465 MET D 18 REMARK 465 SER D 19 REMARK 465 ALA D 20 REMARK 465 GLU D 21 REMARK 465 ALA D 22 REMARK 465 SER D 23 REMARK 465 ALA D 24 REMARK 465 GLU D 98 REMARK 465 ASP D 99 REMARK 465 GLY D 100 REMARK 465 ALA D 101 REMARK 465 ASP D 102 REMARK 465 THR D 103 REMARK 465 THR D 104 REMARK 465 SER D 105 REMARK 465 PRO D 106 REMARK 465 GLU D 107 REMARK 465 THR D 108 REMARK 465 PRO D 109 REMARK 465 ASP D 110 REMARK 465 SER D 111 REMARK 465 GLY E 1386 REMARK 465 SER E 1387 REMARK 465 MET E 1388 REMARK 465 SER E 1389 REMARK 465 GLU E 1390 REMARK 465 ASP E 1391 REMARK 465 PRO E 1392 REMARK 465 PRO E 1393 REMARK 465 HIS E 1394 REMARK 465 SER E 1395 REMARK 465 THR E 1396 REMARK 465 HIS E 1397 REMARK 465 HIS E 1398 REMARK 465 GLY E 1399 REMARK 465 SER E 1400 REMARK 465 ARG E 1401 REMARK 465 GLY E 1402 REMARK 465 GLU E 1403 REMARK 465 GLU E 1404 REMARK 465 ARG E 1405 REMARK 465 GLY F 1386 REMARK 465 SER F 1387 REMARK 465 MET F 1388 REMARK 465 SER F 1389 REMARK 465 GLU F 1390 REMARK 465 ASP F 1391 REMARK 465 PRO F 1392 REMARK 465 PRO F 1393 REMARK 465 HIS F 1394 REMARK 465 SER F 1395 REMARK 465 THR F 1396 REMARK 465 HIS F 1397 REMARK 465 HIS F 1398 REMARK 465 GLY F 1399 REMARK 465 SER F 1400 REMARK 465 ARG F 1401 REMARK 465 GLY F 1402 REMARK 465 GLU F 1403 REMARK 465 GLU F 1404 REMARK 465 GLY G 1386 REMARK 465 SER G 1387 REMARK 465 MET G 1388 REMARK 465 SER G 1389 REMARK 465 GLU G 1390 REMARK 465 ASP G 1391 REMARK 465 PRO G 1392 REMARK 465 PRO G 1393 REMARK 465 HIS G 1394 REMARK 465 SER G 1395 REMARK 465 THR G 1396 REMARK 465 HIS G 1397 REMARK 465 HIS G 1398 REMARK 465 GLY G 1399 REMARK 465 SER G 1400 REMARK 465 ARG G 1401 REMARK 465 GLY G 1402 REMARK 465 GLU G 1403 REMARK 465 GLU G 1404 REMARK 465 GLY H 1386 REMARK 465 SER H 1387 REMARK 465 MET H 1388 REMARK 465 SER H 1389 REMARK 465 GLU H 1390 REMARK 465 ASP H 1391 REMARK 465 PRO H 1392 REMARK 465 PRO H 1393 REMARK 465 HIS H 1394 REMARK 465 SER H 1395 REMARK 465 THR H 1396 REMARK 465 HIS H 1397 REMARK 465 HIS H 1398 REMARK 465 GLY H 1399 REMARK 465 SER H 1400 REMARK 465 ARG H 1401 REMARK 465 GLY H 1402 REMARK 465 GLU H 1403 REMARK 465 GLU H 1404 REMARK 465 ARG H 1405 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 65 58.25 -63.49 REMARK 500 ASN A 69 -146.81 -136.97 REMARK 500 ASP A 70 24.64 -149.85 REMARK 500 ALA B 53 150.23 171.71 REMARK 500 ALA C 65 72.42 -66.65 REMARK 500 ASN C 69 -160.07 -121.96 REMARK 500 GLN D 91 -9.65 -57.98 REMARK 500 VAL D 96 45.78 -94.08 REMARK 500 ASN E1422 87.79 -68.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 26 LEU A 27 -126.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E1416 NE2 REMARK 620 2 CYS E1408 SG 77.3 REMARK 620 3 CYS E1411 SG 121.9 122.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS G1416 NE2 REMARK 620 2 CYS G1408 SG 94.9 REMARK 620 3 CYS G1411 SG 111.6 129.5 REMARK 620 4 CYS G1421 SG 111.0 103.6 105.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F1408 SG REMARK 620 2 CYS F1411 SG 109.0 REMARK 620 3 CYS F1421 SG 124.0 93.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS H1408 SG REMARK 620 2 CYS H1411 SG 106.0 REMARK 620 3 CYS H1421 SG 120.1 124.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 SITE_DESCRIPTION: ZN BINDING SITE FOR RESIDUE E 102 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 SITE_DESCRIPTION: ZN BINDING SITE FOR RESIDUE F 101 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 SITE_DESCRIPTION: ZN BINDING SITE FOR RESIDUE G 103 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 SITE_DESCRIPTION: ZN BINDING SITE FOR RESIDUE H 104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CP5 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE 1ST CAP-GLY DOMAIN IN HUMAN CLIP- REMARK 900 170/RESTIN REMARK 900 RELATED ID: 2HKN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CAP-GLY DOMAIN OF HUMAN DYNACTIN-1 REMARK 900 (P150-GLUED) REMARK 900 RELATED ID: 2HKQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF HUMAN EB1 IN REMARK 900 COMPLEX WITH THE CAP-GLY DOMAIN OF HUMAN DYNACTIN-1 (P150- REMARK 900 GLUED) REMARK 900 RELATED ID: 1TXQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EB1 C-TERMINAL DOMAIN COMPLEXED REMARK 900 WITH THE CAP-GLY DOMAIN OF P150GLUED REMARK 900 RELATED ID: 2HQH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P150GLUED AND CLIP-170 DBREF 2PZO A 15 111 UNP Q14203 DYNA_HUMAN 15 111 DBREF 2PZO B 15 111 UNP Q14203 DYNA_HUMAN 15 111 DBREF 2PZO C 15 111 UNP Q14203 DYNA_HUMAN 15 111 DBREF 2PZO D 15 111 UNP Q14203 DYNA_HUMAN 15 111 DBREF 2PZO E 1388 1427 UNP P30622 CLIP1_HUMAN 1388 1427 DBREF 2PZO F 1388 1427 UNP P30622 CLIP1_HUMAN 1388 1427 DBREF 2PZO G 1388 1427 UNP P30622 CLIP1_HUMAN 1388 1427 DBREF 2PZO H 1388 1427 UNP P30622 CLIP1_HUMAN 1388 1427 SEQADV 2PZO HIS A 17 UNP Q14203 ARG 17 EXPRESSION TAG SEQADV 2PZO HIS B 17 UNP Q14203 ARG 17 EXPRESSION TAG SEQADV 2PZO HIS C 17 UNP Q14203 ARG 17 EXPRESSION TAG SEQADV 2PZO HIS D 17 UNP Q14203 ARG 17 EXPRESSION TAG SEQADV 2PZO GLY E 1386 UNP P30622 EXPRESSION TAG SEQADV 2PZO SER E 1387 UNP P30622 EXPRESSION TAG SEQADV 2PZO GLY F 1386 UNP P30622 EXPRESSION TAG SEQADV 2PZO SER F 1387 UNP P30622 EXPRESSION TAG SEQADV 2PZO GLY G 1386 UNP P30622 EXPRESSION TAG SEQADV 2PZO SER G 1387 UNP P30622 EXPRESSION TAG SEQADV 2PZO GLY H 1386 UNP P30622 EXPRESSION TAG SEQADV 2PZO SER H 1387 UNP P30622 EXPRESSION TAG SEQRES 1 A 97 GLY SER HIS MET SER ALA GLU ALA SER ALA ARG PRO LEU SEQRES 2 A 97 ARG VAL GLY SER ARG VAL GLU VAL ILE GLY LYS GLY HIS SEQRES 3 A 97 ARG GLY THR VAL ALA TYR VAL GLY ALA THR LEU PHE ALA SEQRES 4 A 97 THR GLY LYS TRP VAL GLY VAL ILE LEU ASP GLU ALA LYS SEQRES 5 A 97 GLY LYS ASN ASP GLY THR VAL GLN GLY ARG LYS TYR PHE SEQRES 6 A 97 THR CYS ASP GLU GLY HIS GLY ILE PHE VAL ARG GLN SER SEQRES 7 A 97 GLN ILE GLN VAL PHE GLU ASP GLY ALA ASP THR THR SER SEQRES 8 A 97 PRO GLU THR PRO ASP SER SEQRES 1 B 97 GLY SER HIS MET SER ALA GLU ALA SER ALA ARG PRO LEU SEQRES 2 B 97 ARG VAL GLY SER ARG VAL GLU VAL ILE GLY LYS GLY HIS SEQRES 3 B 97 ARG GLY THR VAL ALA TYR VAL GLY ALA THR LEU PHE ALA SEQRES 4 B 97 THR GLY LYS TRP VAL GLY VAL ILE LEU ASP GLU ALA LYS SEQRES 5 B 97 GLY LYS ASN ASP GLY THR VAL GLN GLY ARG LYS TYR PHE SEQRES 6 B 97 THR CYS ASP GLU GLY HIS GLY ILE PHE VAL ARG GLN SER SEQRES 7 B 97 GLN ILE GLN VAL PHE GLU ASP GLY ALA ASP THR THR SER SEQRES 8 B 97 PRO GLU THR PRO ASP SER SEQRES 1 C 97 GLY SER HIS MET SER ALA GLU ALA SER ALA ARG PRO LEU SEQRES 2 C 97 ARG VAL GLY SER ARG VAL GLU VAL ILE GLY LYS GLY HIS SEQRES 3 C 97 ARG GLY THR VAL ALA TYR VAL GLY ALA THR LEU PHE ALA SEQRES 4 C 97 THR GLY LYS TRP VAL GLY VAL ILE LEU ASP GLU ALA LYS SEQRES 5 C 97 GLY LYS ASN ASP GLY THR VAL GLN GLY ARG LYS TYR PHE SEQRES 6 C 97 THR CYS ASP GLU GLY HIS GLY ILE PHE VAL ARG GLN SER SEQRES 7 C 97 GLN ILE GLN VAL PHE GLU ASP GLY ALA ASP THR THR SER SEQRES 8 C 97 PRO GLU THR PRO ASP SER SEQRES 1 D 97 GLY SER HIS MET SER ALA GLU ALA SER ALA ARG PRO LEU SEQRES 2 D 97 ARG VAL GLY SER ARG VAL GLU VAL ILE GLY LYS GLY HIS SEQRES 3 D 97 ARG GLY THR VAL ALA TYR VAL GLY ALA THR LEU PHE ALA SEQRES 4 D 97 THR GLY LYS TRP VAL GLY VAL ILE LEU ASP GLU ALA LYS SEQRES 5 D 97 GLY LYS ASN ASP GLY THR VAL GLN GLY ARG LYS TYR PHE SEQRES 6 D 97 THR CYS ASP GLU GLY HIS GLY ILE PHE VAL ARG GLN SER SEQRES 7 D 97 GLN ILE GLN VAL PHE GLU ASP GLY ALA ASP THR THR SER SEQRES 8 D 97 PRO GLU THR PRO ASP SER SEQRES 1 E 42 GLY SER MET SER GLU ASP PRO PRO HIS SER THR HIS HIS SEQRES 2 E 42 GLY SER ARG GLY GLU GLU ARG PRO TYR CYS GLU ILE CYS SEQRES 3 E 42 GLU MET PHE GLY HIS TRP ALA THR ASN CYS ASN ASP ASP SEQRES 4 E 42 GLU THR PHE SEQRES 1 F 42 GLY SER MET SER GLU ASP PRO PRO HIS SER THR HIS HIS SEQRES 2 F 42 GLY SER ARG GLY GLU GLU ARG PRO TYR CYS GLU ILE CYS SEQRES 3 F 42 GLU MET PHE GLY HIS TRP ALA THR ASN CYS ASN ASP ASP SEQRES 4 F 42 GLU THR PHE SEQRES 1 G 42 GLY SER MET SER GLU ASP PRO PRO HIS SER THR HIS HIS SEQRES 2 G 42 GLY SER ARG GLY GLU GLU ARG PRO TYR CYS GLU ILE CYS SEQRES 3 G 42 GLU MET PHE GLY HIS TRP ALA THR ASN CYS ASN ASP ASP SEQRES 4 G 42 GLU THR PHE SEQRES 1 H 42 GLY SER MET SER GLU ASP PRO PRO HIS SER THR HIS HIS SEQRES 2 H 42 GLY SER ARG GLY GLU GLU ARG PRO TYR CYS GLU ILE CYS SEQRES 3 H 42 GLU MET PHE GLY HIS TRP ALA THR ASN CYS ASN ASP ASP SEQRES 4 H 42 GLU THR PHE HET ZN F 101 1 HET ZN E 102 1 HET ZN G 103 1 HET ZN H 104 1 HETNAM ZN ZINC ION FORMUL 9 ZN 4(ZN 2+) FORMUL 13 HOH *51(H2 O) HELIX 1 1 ARG A 90 SER A 92 5 3 HELIX 2 2 ARG B 90 SER B 92 5 3 HELIX 3 3 ARG C 90 SER C 92 5 3 HELIX 4 4 TRP E 1417 CYS E 1421 5 5 HELIX 5 5 TRP F 1417 CYS F 1421 5 5 HELIX 6 6 TRP G 1417 CYS G 1421 5 5 HELIX 7 7 TRP H 1417 CYS H 1421 5 5 SHEET 1 A 5 GLY A 86 VAL A 89 0 SHEET 2 A 5 TRP A 57 LEU A 62 -1 N VAL A 60 O ILE A 87 SHEET 3 A 5 ARG A 41 GLY A 48 -1 N THR A 43 O ILE A 61 SHEET 4 A 5 ARG A 32 VAL A 35 -1 N VAL A 33 O GLY A 42 SHEET 5 A 5 ILE A 94 VAL A 96 -1 O GLN A 95 N GLU A 34 SHEET 1 B 2 THR A 72 VAL A 73 0 SHEET 2 B 2 ARG A 76 LYS A 77 -1 O ARG A 76 N VAL A 73 SHEET 1 C 5 GLY B 86 VAL B 89 0 SHEET 2 C 5 TRP B 57 LEU B 62 -1 N VAL B 60 O ILE B 87 SHEET 3 C 5 HIS B 40 GLY B 48 -1 N THR B 43 O ILE B 61 SHEET 4 C 5 ARG B 32 VAL B 35 -1 N VAL B 35 O HIS B 40 SHEET 5 C 5 ILE B 94 GLN B 95 -1 O GLN B 95 N GLU B 34 SHEET 1 D 2 THR B 72 VAL B 73 0 SHEET 2 D 2 ARG B 76 LYS B 77 -1 O ARG B 76 N VAL B 73 SHEET 1 E 5 GLY C 86 VAL C 89 0 SHEET 2 E 5 TRP C 57 LEU C 62 -1 N VAL C 60 O ILE C 87 SHEET 3 E 5 ARG C 41 GLY C 48 -1 N THR C 43 O ILE C 61 SHEET 4 E 5 ARG C 32 VAL C 35 -1 N VAL C 33 O GLY C 42 SHEET 5 E 5 ILE C 94 VAL C 96 -1 O GLN C 95 N GLU C 34 SHEET 1 F 2 THR C 72 VAL C 73 0 SHEET 2 F 2 ARG C 76 LYS C 77 -1 O ARG C 76 N VAL C 73 SHEET 1 G 5 GLY D 86 VAL D 89 0 SHEET 2 G 5 TRP D 57 LEU D 62 -1 N VAL D 60 O ILE D 87 SHEET 3 G 5 HIS D 40 GLY D 48 -1 N THR D 43 O ILE D 61 SHEET 4 G 5 ARG D 32 VAL D 35 -1 N VAL D 33 O GLY D 42 SHEET 5 G 5 ILE D 94 GLN D 95 -1 O GLN D 95 N GLU D 34 SHEET 1 H 2 THR D 72 VAL D 73 0 SHEET 2 H 2 ARG D 76 LYS D 77 -1 O ARG D 76 N VAL D 73 SHEET 1 I 2 TYR E1407 CYS E1408 0 SHEET 2 I 2 MET E1413 PHE E1414 -1 O MET E1413 N CYS E1408 SHEET 1 J 2 TYR F1407 CYS F1408 0 SHEET 2 J 2 MET F1413 PHE F1414 -1 O MET F1413 N CYS F1408 SHEET 1 K 2 TYR G1407 CYS G1408 0 SHEET 2 K 2 MET G1413 PHE G1414 -1 O MET G1413 N CYS G1408 SHEET 1 L 2 TYR H1407 CYS H1408 0 SHEET 2 L 2 MET H1413 PHE H1414 -1 O MET H1413 N CYS H1408 LINK NE2 HIS E1416 ZN ZN E 102 1555 1555 2.22 LINK NE2 HIS G1416 ZN ZN G 103 1555 1555 2.27 LINK SG CYS E1408 ZN ZN E 102 1555 1555 2.63 LINK SG CYS E1411 ZN ZN E 102 1555 1555 2.41 LINK SG CYS F1408 ZN ZN F 101 1555 1555 2.56 LINK SG CYS F1411 ZN ZN F 101 1555 1555 2.63 LINK SG CYS F1421 ZN ZN F 101 1555 1555 2.89 LINK SG CYS G1408 ZN ZN G 103 1555 1555 2.11 LINK SG CYS G1411 ZN ZN G 103 1555 1555 2.64 LINK SG CYS G1421 ZN ZN G 103 1555 1555 2.25 LINK SG CYS H1408 ZN ZN H 104 1555 1555 2.73 LINK SG CYS H1411 ZN ZN H 104 1555 1555 2.40 LINK SG CYS H1421 ZN ZN H 104 1555 1555 2.36 SITE 1 AC1 3 CYS E1411 HIS E1416 CYS E1421 SITE 1 AC2 4 CYS F1408 CYS F1411 HIS F1416 CYS F1421 SITE 1 AC3 4 CYS G1408 CYS G1411 HIS G1416 CYS G1421 SITE 1 AC4 2 CYS H1411 CYS H1421 CRYST1 116.102 116.157 79.917 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012513 0.00000