HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-MAY-07 2Q03 TITLE CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN (YP_563039.1) FROM TITLE 2 SHEWANELLA DENITRIFICANS OS217 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA DENITRIFICANS OS217; SOURCE 3 ORGANISM_TAXID: 318161; SOURCE 4 STRAIN: OS217, DSM 15013; SOURCE 5 ATCC: BAA-1090; SOURCE 6 GENE: YP_563039.1, SDEN_2034; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_563039.1, UNCHARACTERIZED PROTEIN, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2Q03 1 REMARK SEQADV REVDAT 6 24-JUL-19 2Q03 1 REMARK LINK REVDAT 5 25-OCT-17 2Q03 1 REMARK REVDAT 4 18-OCT-17 2Q03 1 REMARK REVDAT 3 13-JUL-11 2Q03 1 VERSN REVDAT 2 24-FEB-09 2Q03 1 VERSN REVDAT 1 29-MAY-07 2Q03 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN (YP_563039.1) JRNL TITL 2 FROM SHEWANELLA DENITRIFICANS OS217 AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3156 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2008 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 246 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.686 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2187 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1863 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2973 ; 1.783 ; 1.913 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4331 ; 0.851 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 4.986 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;32.989 ;25.140 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 341 ;11.245 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;13.671 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 322 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2581 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 478 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 306 ; 0.168 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1849 ; 0.172 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1021 ; 0.180 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1429 ; 0.088 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 304 ; 0.212 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.106 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 20 ; 0.150 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.259 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): 1 ; 0.013 ; 0.500 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1417 ; 2.321 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 586 ; 0.507 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2192 ; 3.303 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 885 ; 5.539 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 781 ; 8.185 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): 58.5910 14.9110 4.0960 REMARK 3 T TENSOR REMARK 3 T11: -0.1143 T22: -0.0937 REMARK 3 T33: -0.0547 T12: 0.0390 REMARK 3 T13: 0.0141 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 1.7551 L22: 3.3636 REMARK 3 L33: 1.0186 L12: -1.5802 REMARK 3 L13: -0.3702 L23: -0.6308 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: -0.1515 S13: -0.3282 REMARK 3 S21: -0.0296 S22: 0.0371 S23: -0.1064 REMARK 3 S31: 0.0192 S32: -0.0547 S33: 0.0186 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 135 REMARK 3 ORIGIN FOR THE GROUP (A): 49.9880 35.0590 9.1970 REMARK 3 T TENSOR REMARK 3 T11: 0.0233 T22: 0.0052 REMARK 3 T33: -0.1900 T12: 0.1098 REMARK 3 T13: -0.0062 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.2009 L22: 4.6173 REMARK 3 L33: 0.5817 L12: -1.9071 REMARK 3 L13: -0.3934 L23: 0.1757 REMARK 3 S TENSOR REMARK 3 S11: -0.1381 S12: -0.3411 S13: 0.0468 REMARK 3 S21: 0.4680 S22: 0.1663 S23: -0.1089 REMARK 3 S31: -0.1431 S32: -0.1291 S33: -0.0282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. TWO GLYCEROL MOLECULES ARE MODELED IN THE STRUCTURE. REMARK 3 5. RESIDUES 1 TO 4 IN SUBUNIT A AND B, RESIDUES 156 AND 137 IN REMARK 3 SUBUNIT B ARE REMARK 3 DISORDERED AND NOT MODELED IN THE STRUCTURE. REMARK 4 REMARK 4 2Q03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.61 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97926, 0.97904 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46034 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.161 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 15.9% ETHANOL, 0.2M REMARK 280 MAGNESIUM CHLORIDE, 0.1M HEPES PH 7.61, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.73500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 72.91500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 72.91500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.36750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 72.91500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 72.91500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.10250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 72.91500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.91500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 11.36750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 72.91500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.91500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.10250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 22.73500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT REMARK 300 OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE REMARK 300 IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 MSE A 3 REMARK 465 LYS A 4 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 MSE B 3 REMARK 465 LYS B 4 REMARK 465 ASP B 136 REMARK 465 SER B 137 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 7 CD1 CD2 REMARK 470 ASP A 28 CG OD1 OD2 REMARK 470 ASN A 29 CG OD1 ND2 REMARK 470 ASP A 78 CG OD1 OD2 REMARK 470 LYS A 80 CE NZ REMARK 470 GLU A 104 CD OE1 OE2 REMARK 470 LYS A 117 CE NZ REMARK 470 SER A 137 OG REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 GLN B 8 CG CD OE1 NE2 REMARK 470 ASP B 28 CG OD1 OD2 REMARK 470 GLN B 47 CD OE1 NE2 REMARK 470 LYS B 79 CE NZ REMARK 470 LYS B 80 CE NZ REMARK 470 GLU B 104 CD OE1 OE2 REMARK 470 LYS B 117 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 13 CG - SE - CE ANGL. DEV. = -17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 123 -92.66 -112.28 REMARK 500 THR B 123 -102.10 -115.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 138 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 372600 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2Q03 A 1 137 UNP Q12ML0 Q12ML0_SHEDO 1 137 DBREF 2Q03 B 1 137 UNP Q12ML0 Q12ML0_SHEDO 1 137 SEQADV 2Q03 GLY A 0 UNP Q12ML0 EXPRESSION TAG SEQADV 2Q03 MSE A 1 UNP Q12ML0 MET 1 MODIFIED RESIDUE SEQADV 2Q03 MSE A 3 UNP Q12ML0 MET 3 MODIFIED RESIDUE SEQADV 2Q03 MSE A 13 UNP Q12ML0 MET 13 MODIFIED RESIDUE SEQADV 2Q03 MSE A 56 UNP Q12ML0 MET 56 MODIFIED RESIDUE SEQADV 2Q03 GLY B 0 UNP Q12ML0 EXPRESSION TAG SEQADV 2Q03 MSE B 1 UNP Q12ML0 MET 1 MODIFIED RESIDUE SEQADV 2Q03 MSE B 3 UNP Q12ML0 MET 3 MODIFIED RESIDUE SEQADV 2Q03 MSE B 13 UNP Q12ML0 MET 13 MODIFIED RESIDUE SEQADV 2Q03 MSE B 56 UNP Q12ML0 MET 56 MODIFIED RESIDUE SEQRES 1 A 138 GLY MSE ASP MSE LYS THR LYS LEU GLN THR ILE ILE GLY SEQRES 2 A 138 MSE PHE GLN ILE THR ALA TRP ASP GLU THR SER TYR PHE SEQRES 3 A 138 GLU SER ASP ASN GLY ALA LYS LEU THR GLN ALA VAL ILE SEQRES 4 A 138 THR GLN SER TYR GLN GLY VAL LEU GLN GLY HIS SER GLU SEQRES 5 A 138 ILE ARG TYR LEU MSE SER TYR GLN ASP ASN ALA ASN ALA SEQRES 6 A 138 THR PHE VAL GLY PHE GLU HIS PHE THR GLY SER LEU GLY SEQRES 7 A 138 ASP LYS LYS GLY SER PHE ILE LEU GLN HIS LYS GLY LEU SEQRES 8 A 138 PHE ALA ALA GLY VAL ALA SER SER GLU PHE GLU LEU VAL SEQRES 9 A 138 GLU ARG SER ALA THR GLY ASP PHE VAL HIS LEU VAL GLY SEQRES 10 A 138 LYS GLY HIS PHE VAL SER THR GLU ASN GLY GLN ALA ASN SEQRES 11 A 138 TYR GLN ILE THR LEU GLN ASP SER SEQRES 1 B 138 GLY MSE ASP MSE LYS THR LYS LEU GLN THR ILE ILE GLY SEQRES 2 B 138 MSE PHE GLN ILE THR ALA TRP ASP GLU THR SER TYR PHE SEQRES 3 B 138 GLU SER ASP ASN GLY ALA LYS LEU THR GLN ALA VAL ILE SEQRES 4 B 138 THR GLN SER TYR GLN GLY VAL LEU GLN GLY HIS SER GLU SEQRES 5 B 138 ILE ARG TYR LEU MSE SER TYR GLN ASP ASN ALA ASN ALA SEQRES 6 B 138 THR PHE VAL GLY PHE GLU HIS PHE THR GLY SER LEU GLY SEQRES 7 B 138 ASP LYS LYS GLY SER PHE ILE LEU GLN HIS LYS GLY LEU SEQRES 8 B 138 PHE ALA ALA GLY VAL ALA SER SER GLU PHE GLU LEU VAL SEQRES 9 B 138 GLU ARG SER ALA THR GLY ASP PHE VAL HIS LEU VAL GLY SEQRES 10 B 138 LYS GLY HIS PHE VAL SER THR GLU ASN GLY GLN ALA ASN SEQRES 11 B 138 TYR GLN ILE THR LEU GLN ASP SER MODRES 2Q03 MSE A 13 MET SELENOMETHIONINE MODRES 2Q03 MSE A 56 MET SELENOMETHIONINE MODRES 2Q03 MSE B 13 MET SELENOMETHIONINE MODRES 2Q03 MSE B 56 MET SELENOMETHIONINE HET MSE A 13 16 HET MSE A 56 8 HET MSE B 13 16 HET MSE B 56 8 HET GOL A 138 6 HET GOL B 138 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *246(H2 O) SHEET 1 A10 THR A 108 GLY A 109 0 SHEET 2 A10 LYS A 79 ALA A 92 -1 N SER A 82 O THR A 108 SHEET 3 A10 VAL A 95 LEU A 102 -1 O GLU A 101 N GLN A 86 SHEET 4 A10 LEU A 114 SER A 122 -1 O SER A 122 N ALA A 96 SHEET 5 A10 GLN A 127 ASP A 136 -1 O THR A 133 N LYS A 117 SHEET 6 A10 LEU A 7 GLU A 26 -1 N GLN A 8 O LEU A 134 SHEET 7 A10 LYS A 32 TYR A 42 -1 O LEU A 33 N TYR A 24 SHEET 8 A10 LEU A 46 ASP A 60 -1 O ILE A 52 N ILE A 38 SHEET 9 A10 ASN A 63 LEU A 76 -1 O THR A 65 N SER A 57 SHEET 10 A10 LYS A 79 ALA A 92 -1 O GLY A 89 N PHE A 66 SHEET 1 B10 THR B 108 GLY B 109 0 SHEET 2 B10 LYS B 79 ALA B 92 -1 N SER B 82 O THR B 108 SHEET 3 B10 VAL B 95 LEU B 102 -1 O GLU B 101 N GLN B 86 SHEET 4 B10 VAL B 115 SER B 122 -1 O SER B 122 N ALA B 96 SHEET 5 B10 GLN B 127 GLN B 135 -1 O THR B 133 N LYS B 117 SHEET 6 B10 GLN B 8 GLU B 26 -1 N GLY B 12 O TYR B 130 SHEET 7 B10 LYS B 32 TYR B 42 -1 O LEU B 33 N TYR B 24 SHEET 8 B10 LEU B 46 ASP B 60 -1 O ILE B 52 N ILE B 38 SHEET 9 B10 ASN B 63 LEU B 76 -1 O SER B 75 N GLN B 47 SHEET 10 B10 LYS B 79 ALA B 92 -1 O GLY B 89 N PHE B 66 LINK C GLY A 12 N AMSE A 13 1555 1555 1.33 LINK C GLY A 12 N BMSE A 13 1555 1555 1.32 LINK C AMSE A 13 N PHE A 14 1555 1555 1.33 LINK C BMSE A 13 N PHE A 14 1555 1555 1.34 LINK C LEU A 55 N MSE A 56 1555 1555 1.34 LINK C MSE A 56 N SER A 57 1555 1555 1.33 LINK C GLY B 12 N BMSE B 13 1555 1555 1.33 LINK C GLY B 12 N AMSE B 13 1555 1555 1.33 LINK C BMSE B 13 N PHE B 14 1555 1555 1.35 LINK C AMSE B 13 N PHE B 14 1555 1555 1.32 LINK C LEU B 55 N MSE B 56 1555 1555 1.34 LINK C MSE B 56 N SER B 57 1555 1555 1.33 SITE 1 AC1 6 GLU B 99 LYS B 117 GLY B 118 HIS B 119 SITE 2 AC1 6 GLN B 131 THR B 133 SITE 1 AC2 7 GLU A 99 LYS A 117 GLY A 118 HIS A 119 SITE 2 AC2 7 GLN A 131 THR A 133 HOH A 178 CRYST1 145.830 145.830 45.470 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006857 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021993 0.00000